Cited by 47Cellular Mechanics and InteractionsCell Image Analysis TechniquesCancer Cells and Metastasis

A simple non-perturbing cell migration assay insensitive to proliferation effects

Open access
Glenn, Honor L., Messner, Jacob, Meldrum, Deirdre R.·2016·Scientific Reports

Abstract

Migration is a fundamental cellular behavior that plays an indispensable role in development and homeostasis, but can also contribute to pathology such as cancer metastasis. Due to its relevance to many aspects of human health, the ability to accurately measure cell migration is of broad interest and numerous approaches have been developed. One of the most commonly employed approaches, because of its simplicity and throughput, is the exclusion zone assay in which cells are allowed to migrate into an initially cell-free region. A major drawback of this assay is that it relies on simply counting cells in the exclusion zone and therefore cannot distinguish the effects of proliferation from migration. We report here a simple modification to the exclusion zone migration assay that exclusively measures cell migration and is not affected by proliferation. This approach makes use of a lineage-tracing vital stain that is retained through cell generations and effectively reads out migration relative to the original, parental cell population. This modification is simple, robust, non-perturbing and inexpensive. We validate the method in a panel of cell lines under conditions that inhibit or promote migration and demonstrate its use in normal and cancer cell lines as well as primary cells.

AI snapshot

Written from the paper’s full text.

TL;DR

The paper describes a modified exclusion-zone migration assay that labels cells with lineage-tracing fluorescent dyes so that migration is measured relative to the original parental population and is not confounded by proliferation. It validates the approach across normal, cancer, and primary cell types and under migration-promoting or -inhibiting conditions.

Key findings

  • The CellTrace Violet (CV) and CellTrace Far Red (CFR) dyes did not significantly affect migration (p = 0.87 for CFR, p = 0.99 for CV) or proliferation (p = 0.80 for CFR, p = 0.96 for CV) in the tested cell lines.
  • Dye transfer between cells was low: CV transferred at less than 5% and CFR at less than 4%; CV was well retained in all cell types up to 24 hours, while CFR showed a small decrease in EPC2 and CP-A cells at 24 hours (p = 0.03).
  • Mitomycin C, commonly used to block proliferation in migration assays, reduced migration by 56% in EPC2 and 38% in CP-A cells, but did not affect HeLa, Swiss 3T3, or the breast cell lines tested.
  • Hypoxia (1% O2) modestly but significantly reduced migration of normal and cancer-derived epithelial cells, while fibroblasts were unaffected; tumor-derived and normal-tissue-derived cells from the same K-ras mouse model showed no discernible migration difference under normoxia.
  • A single-image analysis using standard ROIs gave results equivalent to dual t0/tf imaging (p = 0.85) and the same statistical discrimination between cell lines.

Methods

  • Cells were seeded into an Oris™ 96-well exclusion-zone migration kit with silicon stoppers; after attachment, stoppers were removed and cells were labeled with CellTrace dyes, then imaged at t0 and after 12–24 hours of migration.
  • Migration was calculated as relative migration = (I_ROI-2 / I_ROI-1) × 100, where ROI-2 is the exclusion zone and ROI-1 is the total labeled cell area.
  • Treatments included mitomycin C (10 μg/mL for 2 hours), cytochalasin D (1 μg/mL), serum starvation/stimulation, collagen coating, and hypoxia (1% O2); statistical analysis used ANOVA with Tukey’s or Dunnett’s post hoc tests, with significance at p < 0.05.

Limitations

  • The paper states that additional work is needed to characterize migration patterns in the K-ras mouse model more thoroughly, including pre-cancer time points, control animals, and a larger sample size.
  • The paper notes that prior dye-retention studies were done by flow cytometry and may not be directly comparable to the adherent-cell imaging system used here.
  • Evident from the text: the Results and Methods report different concentrations for CV and CFR, and the assay measures relative motility rather than absolute migration; it also depends on fluorescence microscopy and image analysis, with optimal migration times varying from 11–24 hours across cell types.

Model-written summary. Check it against the paper before relying on it.

Integrity signals

Registry

Crossref · 10.1038/srep31694

Cites

23 of 23 references verified0 citation errors · 0 not checkable

Statistics

Nothing to recompute.

Claims the paper makes

1 of 8 cited sources checked · 0 supported · 0 flagged · accuracy not yet measured

  • Premisecitation

    CellTrace dyes distribute consistently through cell divisions such that cells of each generation contain a 2-fold reduction in dye relative to the previous generation.

    “The CellTrace dyes have been demonstrated to distribute consistently through cell divisions such that cells of each generation contain a 2-fold reduction in dye relative to the previous generation1718.”
    Quote in the paperSubstantial claim1 of 2 sources checked
    • cites [17] Zhou, W. et al. In Journal of Biological Methods3 (2016).

      Couldn’t be matched to a paper in Crossref, so it can’t be checked.

    • cites [18] Quah, B. J. C. & Parish, C. R. New and improved methods for measuring lymphocyte proliferation in vitro and in vivo using CFSE-like fluorescent dyes. J Immunol Methods 379, 1–14, 10.1016/j.jim.2012.02.012 (2012). source

      Section 3.2 (p. 5) reports division profiles for CFSE, CTV and CPD, supporting their use to track successive cell generations. It does not establish a consistent two-fold reduction in dye for every generation; it reports broader peak variance for CTV and CPD, and the Discussion (p. 12) describes dye transfer that increases variability. (LLM, conf=0.84)

      Experimental — accuracy not yet measured
  • Findingown data

    The new method is relatively high throughput in a 96-well format based on a commercial migration platform.

    “Our new method is relatively high throughput as we have demonstrated it in a 96-well format based on a commercial migration platform.”
    Quote in the paperNot a substantial claim
  • Findingown data

    The assay detected inhibition of cell migration resulting from pharmacological destabilization of filamentous actin.

    “We also validated that we could detect the inhibition of cell migration resulting from pharmacological destabilization of filamentous actin.”
    Quote in the paperSubstantial claim
  • Findingown data

    MCF7 cells were resistant to treatment with cytochalasin D at the commonly used concentration.

    “Interestingly, MCF7 cells were resistant to treatment with the actin destabilizing drug, cytochalasin D at the commonly used concentration.”
    Quote in the paperNot a substantial claim
  • Findingown data

    Cell density did not differ from controls 24 hours after exposure to either dye in any of the cell lines (p = 0.80 for CFR and 0.96 for CV).

    “We found that cell density did not differ from controls 24 hours after exposure to either dye in any of the cell lines (p = 0.80 for CFR and 0.96 for CV) (Fig. 2c,d).”
    Quote in the paperSubstantial claim
  • May combine two claims. 20
  • Classified as probably not a substantial claim. 13
  • The quote only partly states this claim. 1
  • May combine two claims.

    Findingnone given

    The CV and CFR dyes do not significantly impact relevant cellular processes such as migration rate or proliferation.

    “We determined that the CV and CFR dyes, do not significantly impact relevant cellular processes such as migration rate or proliferation.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    At 5 μM, the highest concentration of CFR, there was a small decrease in the mean migration values, though it did not meet the criterion for significance.

    “At 5 μM, the highest concentration of CFR, there was a small decrease in the mean migration values. Though it did not meet the criterion for significance, in subsequent experiments we used a maximum concentration of 4 μM of this label.”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Findingown data

    EPC2 cells had significantly lower dye transfer and MDA-MB-231 had significantly higher transfer than the other cell lines (p < 0.05).

    “EPC2 cells had significantly lower dye transfer and MDA-MB-231 had significantly higher transfer than the other cell lines (p < 0.05).”
    Quote in the paperNot a substantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Findingown data

    The assay takes approximately 3.5 hours from initiation of migration through calculation of migration values, excluding migration time.

    “After cell seeding, and excluding migration time, the assay takes approximately 3.5 hours from initiation of migration through calculation of migration values.”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Findingown data

    CV was very well retained in all cell types tested (EPC2, CP-A, MDA-MB-231, HeLa) with no significant loss of signal up to 24 hours.

    “We found that CV was very well retained in all cell type and there was no significant loss of signal up to 24 hours (Fig. 3a), the maximum migration time.”
    Quote in the paperSubstantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing), S4 (based). May combine two claims.

    Findingnone given

    Oris silicon stoppers can be cleaned, sterilized, and re-used up to 5 times without loss of effectiveness.

    “Oris™ silicon stoppers were cleaned, sterilized, and re-used up to 5 times will no loss of effectiveness.”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Findingown data

    MMC treatment reduced migration by 56% in EPC-2 cells and 38% in CP-A cells.

    “Migration was reduced by 56%, and 38% in EPC-2 and CP-A cells, respectively.”
    Quote in the paperSubstantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Findingnone given

    The only additional reagent cost is for the CellTrace stain, estimated at about 40 cents per sample.

    “The only additional cost of reagents is for the CellTrace stain, which we estimate to add about 40 cents per sample.”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Findingown data

    Migration of EPC2 and CP-A cells was not strongly impacted by either growth factor stimulation or collagen coating alone, but did significantly increase as a result of the combined treatment.

    “Migration of EPC2 and CP-A cells was not strongly impacted by either treatment alone, but did significantly increase as a result of the combined treatment.”
    Quote in the paperNot a substantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Findingown data

    Silicon stoppers can be sterilized and reused at least up to five times with no loss of effectiveness.

    “Also, we found that silicon stoppers, such as those used in the Platypus Oris™ 96-well migration kit can be sterilized and reused at least up to five times with no loss of effectiveness.”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Findingown data

    CFR is well retained in MDA-MB-231 and HeLa cells with no loss of signal, but shows a small measurable decrease in signal from EPC2 and CP-A cells at 24 hours (p = 0.03).

    “CFR was also well retained, with no loss of signal in MDA-MB-231 or and HeLa cells. However there was a small, measureable decrease in signal from EPC2 and CP-A cells at 24 hours (p = 0.03) with this dye (Fig. 3b).”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Findingown data

    Both dyes were well retained in their respectively labeled populations; overall, CV transferred at less than 5% and CFR at less than 4%.

    “Both dyes were well retained in the respectively labeled population; overall, CV transferred at less than 5% and CFR at less than 4%.”
    Quote in the paperSubstantial claim
  • May combine two claims. The quote only partly states this claim.

    Interpretationown data

    The modification is non-perturbing (does not affect cell migration or proliferation).

    “This modification is simple, robust, non-perturbing, and inexpensive.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Premisecitation

    CV and CFR dyes are stably retained in the cytosol and minimally transferred between neighboring cells.

    “Both dyes have also been demonstrated to be well retained in cultures over time and to be minimally transferred between neighboring cells16171820.”
    Quote in the paperSubstantial claim0 of 1 sources checked
    • cites 16171820

      Couldn’t be matched to a paper in Crossref, so it can’t be checked.

  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Interpretationreasoning

    The cost of the new approach is directly comparable to commercially available barrier or exclusion zone type migration kits.

    “Since the new approach can employ commercially available barrier or exclusion zone type migration kits, the cost is directly comparable to these formats.”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Interpretationown data

    The practice of using mitomycin C to block proliferation during migration assays adds another confounding factor to migration assays and the effect on cells is unpredictable.

    “Our results suggest that this practice adds another confounding factor to migration assays and the effect on cells is unpredictable.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Interpretationreasoning

    The new method exclusively measures cell migration and is not affected by proliferation.

    “We report here a simple modification to the exclusion zone migration assay that exclusively measures cell migration and is not affected by proliferation.”
    • Also stated in: § Abstract · hedged
      “We describe here a new method for quantifying cell migration that is essentially blind to the confounding influence of cell proliferation.”
    Quote in the paperSubstantial claim
    • Rests on an assumption: The CellTrace dyes are uniformly distributed to all cells at the start of the migration assay (t0).
    • Rests on an assumption: The cell-free exclusion zone is completely devoid of cells at t0.
  • May combine two claims.

    Interpretationown data

    The assay yields a measure of relative motility, allowing direct comparison of different cell lines.

    “Since our approach yields a measure of relative motility, we were able to use it to directly compare different cell lines to each other.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Interpretationreasoning

    Controlling for these sources of variability improves reproducibility and allows reliable comparisons between different cell types.

    “Controlling for these sources of variability not only improves the reproducibility of results, but also allows for reliable comparisons between different cell types, which is not readily accomplished by traditional approaches.”
    Quote in the paperSubstantial claim
  • Classified as probably not a substantial claim.

    Interpretationnone given

    The reported assay is flexible.

    “In conclusion, we report here a high throughput, flexible, inexpensive, and simple assay that measures cell migration without the confounding influence of cell proliferation.”
    Quote in the paperSubstantial claim
  • Probably not a substantial claim: may not pass S2 (checkable), S3 (load-bearing).

    Interpretationnone given

    The reported assay is simple.

    “In conclusion, we report here a high throughput, flexible, inexpensive, and simple assay that measures cell migration without the confounding influence of cell proliferation.”
    Quote in the paperNot a substantial claim
  • Probably not a substantial claim: may not pass S2 (checkable).

    Interpretationreasoning

    Any image analysis software designed for biological applications should perform equivalently to the NIS-Elements software used.

    “Our analysis pipeline made use of the NIS-Elements software (Nikon, Melville, NY), but does not require any specialized capability, therefore any image analysis software designed for biological applications, many of which are open source, should perform equivalently.”
    Quote in the paperNot a substantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Interpretationnone given

    The reported assay is inexpensive.

    “In conclusion, we report here a high throughput, flexible, inexpensive, and simple assay that measures cell migration without the confounding influence of cell proliferation.”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Premisecitation

    CellTrace dyes are stably retained in the cytosol and have minimal transfer from cell to cell, except from parent to daughter cells.

    “They have been shown to be stably retained in the cytosol and have minimal transfer from cell to cell, except from parent to daughter cells1617.”
    Quote in the paperSubstantial claim0 of 2 sources checked
    • cites [16] Filby, A., Begum, J., Jalal, M. & Day, W. Appraising the suitability of succinimidyl and lipophilic fluorescent dyes to track proliferation in non-quiescent cells by dye dilution. Methods 82, 29–37, 10.1016/j.ymeth.2015.02.016 (2015). source
    • cites [17] Zhou, W. et al. In Journal of Biological Methods3 (2016).

      Couldn’t be matched to a paper in Crossref, so it can’t be checked.

  • Probably not a substantial claim: may not pass S3 (load-bearing), S4 (based).

    Interpretationnone given

    The method is easily extensible to any exclusion zone-type migration assay format.

    “However, the method is easily extensible to any exclusion zone-type migration assay format.”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Interpretationown data

    For most purposes, a single, standard set of ROIs can be applied to multiple samples, dramatically increasing throughput and simplicity of the assay.

    “These results suggest that for most purposes, a single, standard set of ROIs can be applied to multiple samples, dramatically increasing throughput and simplicity of the assay.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Interpretationown data

    The approach uses a lineage-tracing vital stain that is retained through cell generations and effectively reads out migration relative to the original, parental cell population.

    “This approach makes use of a lineage-tracing vital stain that is retained through cell generations and effectively reads out migration relative to the original, parental cell population.”
    Quote in the paperSubstantial claim
    • Rests on an assumption: The CellTrace dyes are uniformly distributed to all cells at the start of the migration assay (t0).
  • Probably not a substantial claim: may not pass S2 (checkable), S3 (load-bearing). May combine two claims.

    Interpretationreasoning

    The new approach is highly accessible and expected to be easily implementable in nearly any lab already outfitted for cell culture and fluorescence microscopy.

    “Another benefit of our novel approach is that it is highly accessible, and is expected to be easily implementable in nearly any lab that is already outfitted for cell culture and fluorescence microscopy.”
    Quote in the paperNot a substantial claim
  • Classified as probably not a substantial claim. May combine two claims.

    Study design and conductnone given

    Migration time was optimized for each experimental cell panel such that cells with the highest migration rate did not completely fill the exclusion zone and cells with the slowest migration rate had sufficient numbers of cells in the exclusion zone to be reproducibly detected above background.

    “Migration time was optimized for each experimental cell panel such that cells with the highest migration rate did not completely fill the exclusion zone and cells with the slowest migration rate had sufficient numbers of cells in the exclusion zone that they could be reproducibly detected above background, which is the signal at time point t0.”
    Quote in the paperSubstantial claim
  • Classified as probably not a substantial claim.

    Study design and conductnone given

    Cell density was optimized for each cell type such that after overnight attachment, cells had just reached confluence.

    “Cell density was optimized for each cell type such that after overnight attachment, cells had just reached confluence.”
    Quote in the paperSubstantial claim
30 of 30
  • The paper relies on this without support.

    The CellTrace dyes are uniformly distributed to all cells at the start of the migration assay (t0).

    “After adhesion, the inserts were removed and the cells were stained with either 4 μM CellTrace Violet (CV) or 20 μM CellTrace Far Red (CFR) (Thermo Scientific, Rochester, NY).”
  • The paper relies on this without support.

    The cell-free exclusion zone is completely devoid of cells at t0.

    “Cells were seeded into a 96-well plate containing silicon inserts that form a circular, cell-free zone in the center of each well.”
  • The authors state this as an assumption.

    Cancer cells generally have increased motility relative to normal cells.

    “however cancer cells are generally assumed to have increased motility relative to normal cells.”
3 of 3

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

Each contradiction between two passages listed here was confirmed by an independent check.

  • CellTrace dye concentrations are reversed between Results and Methods

    Minor

    The Results state that cells were stained with 4 μM CellTrace Violet and 20 μM CellTrace Far Red, while the Methods specify 20 μM Violet and 4 μM Far Red.

1 of 1

Cites

Flagged first, then by citations

Research works printed but not linked: 1

  1. Zhou, W. et al. In Journal of Biological Methods3 (2016).

Cited by

Sorted by citations

Authors
Glenn, H. L., Messner, J., & Meldrum, D. R.
Affiliations
Arizona State University (US)
Venue
Scientific Reports
Published
2016-08-18
Volume
6
Issue
1
Pages
31694-31694
ISSN
2045-2322 (ISSN-L)
OpenAlex
W2512719934
Cited by
47
References
23
Citations by year
2026: 4 · 2025: 5 · 2024: 2 · 2023: 5 · 2022: 10 · 2021: 4 · 2020: 4 · 2019: 6 · 2018: 5 · 2017: 2
FWCI
2.54
Type
journal article
Language
en
Open access
Locations
  • Scientific Reports (publishedVersion, cc-by)
  • PubMed (publishedVersion)
  • PubMed Central (submittedVersion, cc-by)
  • Arizona State University Library Digital Repository (Arizona State University) (submittedVersion, cc-by)
Funders
Arizona State University
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Cell Biology › Cellular Mechanics and Interactions
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Biophysics › Cell Image Analysis Techniques
  • Health Sciences › Medicine › Oncology › Cancer Cells and Metastasis
Keywords
cell migration assay, lineage tracing, vital stains, cell proliferation, metastasis, primary cells
MeSH terms
Animals, Biological Assay, Cell Line, Transformed, Cell Movement, HeLa Cells, Humans, Neoplasms, Cell Proliferation, Mice, MCF-7 Cells

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