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Microsatellites: genomic distribution, putative functions and mutational mechanisms: a review
Open accessAbstract
Microsatellites, or tandem simple sequence repeats (SSR), are abundant across genomes and show high levels of polymorphism. SSR genetic and evolutionary mechanisms remain controversial. Here we attempt to summarize the available data related to SSR distribution in coding and noncoding regions of genomes and SSR functional importance. Numerous lines of evidence demonstrate that SSR genomic distribution is nonrandom. Random expansions or contractions appear to be selected against for at least part of SSR loci, presumably because of their effect on chromatin organization, regulation of gene activity, recombination, DNA replication, cell cycle, mismatch repair system, etc. This review also discusses the role of two putative mutational mechanisms, replication slippage and recombination, and their interaction in SSR variation.
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Cites
Evolution of chromosome bands: molecular ecology of noncoding DNA
Holmquist, G. P. (1989) · Journal of Molecular Evolution · doi:10.1007/bf02602928 · Cited by 177
Brock, G. (1999) · Human Molecular Genetics · doi:10.1093/hmg/8.6.1061 · Cited by 122
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Variable tandem repeats accelerate evolution of coding and regulatory sequences
Gemayel, R., Vinces, M. D., Legendre, M., & Verstrepen, K. J. (2010) · Annual Review of Genetics · doi:10.1146/annurev-genet-072610-155046 · Cited by 633
Conservation and the Genomics of Populations
Allendorf, F. W., Funk, W. C., Aitken, S. N., Byrne, M., Luikart, G., & Antunes, A. (2022) · doi:10.1093/oso/9780198856566.001.0001 · Cited by 207
Adams, R. H., Blackmon, H., Reyes-Velasco, J., Schield, D. R., Card, D. C., Andrew, A. L., Waynewood, N., & Castoe, T. A. (2016) · Genome · doi:10.1139/gen-2015-0124 · Cited by 50
Genome-Wide Analysis of Simple Sequence Repeats in Marine Animals—a Comparative Approach
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Metadata
- Authors
- Li, Y., Korol, A. B., Fahima, T., Beiles, A., & Nevo, E.
- Venue
- Molecular Ecology
- Publisher
- Wiley
- Published
- 2002-12
- Volume
- 11
- Issue
- 12
- Pages
- 2453-2465
- ISSN
- 0962-1083 (ISSN-L)
- 1365-294X
- OpenAlex
- W2134770471
- Cited by
- 1,246
- References
- 2
- FWCI
- 13.01
- Type
- journal article
- Language
- en
- Open access
- bronze
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