Conservation and the Genomics of Populations
Abstract
Loss of biodiversity is among the greatest problems facing the world today. Conservation and the Genomics of Populations gives a comprehensive overview of the essential background, concepts, and tools needed to understand how genetic information can be used to conserve species threatened with extinction, and to manage species of ecological or commercial importance. New molecular techniques, statistical methods, and computer programs, genetic principles, and methods are becoming increasingly useful in the conservation of biological diversity. Using a balance of data and theory, coupled with basic and applied research examples, this book examines genetic and phenotypic variation in natural populations, the principles and mechanisms of evolutionary change, the interpretation of genetic data from natural populations, and how these can be applied to conservation. The book includes examples from plants, animals, and microbes in wild and captive populations. This third edition has been thoroughly revised to include advances in genomics and contains new chapters on population genomics, genetic monitoring, and conservation genetics in practice, as well as new sections on climate change, emerging diseases, metagenomics, and more. More than one-third of the references in this edition were published after the previous edition. Each of the 24 chapters and the Appendix end with a Guest Box written by an expert who provides an example of the principles presented in the chapter from their own work. This book is essential for advanced undergraduate and graduate students of conservation genetics, natural resource management, and conservation biology, as well as professional conservation biologists and policy-makers working for wildlife and habitat management agencies. Much of the book will also interest nonprofessionals who are curious about the role of genetics in conservation and management of wild and captive populations.
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White tigers are known to suffer various abnormalities and congenital defects, including hip dysplasia, strabismus, cleft palates, reduced fertility, scoliosis, immune system dysfunction, UV-related skin conditions and poor dental health.
“White tigers, in particular, are known to suffer various abnormalities and congenital defects, including hip dysplasia, strabismus, cleft palates, reduced fertility, scoliosis, immune system dysfunction [74,75], UV-related skin conditions [39] and poor dental health [76].”
From Tiger colour morphs in zoos raise conservation and welfare concerns (2026) · cites this paper as [75]
Cites
An Overview of CMIP5 and the Experiment Design
Taylor, K. E., Stouffer, R. J., & Meehl, G. A. (2012) · Bulletin of the American Meteorological Society · doi:10.1175/bams-d-11-00094.1 · Cited by 14,052 · see citing works
Habitat fragmentation and its lasting impact on Earth’s ecosystems
Haddad, N. M., Brudvig, L. A., Clobert, J., Davies, K. F., Gonzalez, A., Holt, R. D., Lovejoy, T. E., Sexton, J. O., Austin, M. P., Collins, C. D., et al. (2015) · Science Advances · doi:10.1126/sciadv.1500052 · Cited by 4,773 · see citing works
Defaunation in the Anthropocene
Dirzo, R., Young, H. S., Galetti, M., Ceballos, G., Isaac, N. J. B., & Collen, B. (2014) · Science · doi:10.1126/science.1251817 · Cited by 4,305 · see citing works
The biodiversity of species and their rates of extinction, distribution, and protection
Pimm, S. L., Jenkins, C. N., Abell, R., Brooks, T. M., Gittleman, J. L., Joppa, L. N., Raven, P. H., Roberts, C. M., & Sexton, J. O. (2014) · Science · doi:10.1126/science.1246752 · Cited by 3,542 · see citing works
ANGSD: Analysis of Next Generation Sequencing Data
Korneliussen, T. S., Albrechtsen, A., & Nielsen, R. (2014) · BMC Bioinformatics · doi:10.1186/s12859-014-0356-4 · Cited by 2,982 · see citing works
Ceballos, G., Ehrlich, P. R., & Dirzo, R. (2017) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1704949114 · Cited by 2,663 · see citing works
Mapping the world’s free-flowing rivers
Grill, G., Lehner, B., Thieme, M., Geenen, B., Tickner, D., Antonelli, F., Babu, S., Borrelli, P., Cheng, L., Crochetiere, H., et al. (2019) · Nature · doi:10.1038/s41586-019-1111-9 · Cited by 2,473 · see citing works
Accelerating extinction risk from climate change
Urban, M. C. (2015) · Science · doi:10.1126/science.aaa4984 · Cited by 2,436 · see citing works
The population genetic consequences of habitat fragmentation for plants
Young, A., Boyle, T., & Brown, T. (1996) · Trends in Ecology & Evolution · doi:10.1016/0169-5347(96)10045-8 · Cited by 2,113 · see citing works
Linkage disequilibrium in finite populations
Hill, W. G., & Robertson, A. (1968) · Theoretical and Applied Genetics · doi:10.1007/bf01245622 · Cited by 2,035 · see citing works
Genetic history of an archaic hominin group from Denisova Cave in Siberia
Reich, D., Green, R. E., Kircher, M., Krause, J., Patterson, N., Durand, E. Y., Viola, B., Briggs, A. W., Stenzel, U., Johnson, P. L. F., et al. (2010) · Nature · doi:10.1038/nature09710 · Cited by 1,991 · see citing works
Linkage disequilibrium--understanding the evolutionary past and mapping the medical future.
Slatkin, M. (2008) · Nature Reviews Genetics · doi:10.1038/nrg2361 · Cited by 1,614 · see citing works
Population diversity and the portfolio effect in an exploited species
Schindler, D. E., Hilborn, R., Chasco, B., Boatright, C. P., Quinn, T. P., Rogers, L. A., & Webster, M. S. (2010) · Nature · doi:10.1038/nature09060 · Cited by 1,605 · see citing works
Climate change, adaptation, and phenotypic plasticity: the problem and the evidence
Merilä, J., & Hendry, A. P. (2014) · Evolutionary Applications · doi:10.1111/eva.12137 · Cited by 1,369 · see citing works
A mid-term analysis of progress toward international biodiversity targets
Tittensor, D. P., Walpole, M., Hill, S. L. L., Boyce, D. G., Britten, G. L., Burgess, N. D., Butchart, S. H. M., Leadley, P. W., Regan, E. C., Alkemade, R., et al. (2014) · Science · doi:10.1126/science.1257484 · Cited by 1,227 · see citing works
Using narratives and storytelling to communicate science with nonexpert audiences
Dahlstrom, M. F. (2014) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1320645111 · Cited by 1,159 · see citing works
Slightly Deleterious Mutant Substitutions in Evolution
OHTA, T. (1973) · Nature · doi:10.1038/246096a0 · Cited by 1,104 · see citing works
SNPs in ecology, evolution and conservation
Morin, P. A., Luikart, G., Wayne, R. K., & the SNP workshop group (2004) · Trends in Ecology & Evolution · doi:10.1016/j.tree.2004.01.009 · Cited by 1,080 · see citing works
Self-citationRuns of homozygosity: windows into population history and trait architecture
Ceballos, F. C., Joshi, P. K., Clark, D. W., Ramsay, M., & Wilson, J. F. (2018) · Nature Reviews Genetics · doi:10.1038/nrg.2017.109 · Cited by 1,006 · see citing works
Finding the genomic basis of local adaptation: pitfalls, practical solutions, and future directions
Hoban, S., Kelley, J. L., Lotterhos, K. E., Antolin, M. F., Bradburd, G., Lowry, D. B., Poss, M. L., Reed, L. K., Storfer, A., & Whitlock, M. C. (2016) · The American Naturalist · doi:10.1086/688018 · Cited by 876 · see citing works
Genealogical trees, coalescent theory and the analysis of genetic polymorphisms
Rosenberg, N. A., & Nordborg, M. (2002) · Nature Reviews Genetics · doi:10.1038/nrg795 · Cited by 750 · see citing works
On measures of gametic disequilibrium.
Lewontin, R. C. (1988) · Genetics · doi:10.1093/genetics/120.3.849 · Cited by 712 · see citing works
Population Diversity: Its Extent and Extinction
Hughes, J. B., Daily, G. C., & Ehrlich, P. R. (1997) · Science · doi:10.1126/science.278.5338.689 · Cited by 596 · see citing works
Reliability of genetic bottleneck tests for detecting recent population declines
PEERY, M. Z., KIRBY, R., REID, B. N., STOELTING, R., DOUCET‐BËER, E., ROBINSON, S., VÁSQUEZ‐CARRILLO, C., PAULI, J. N., & PALSBØLL, P. J. (2012) · Molecular Ecology · doi:10.1111/j.1365-294x.2012.05635.x · Cited by 578 · see citing works
The genetic consequences of habitat fragmentation
Templeton, A. R., Shaw, K., Routman, E., & Davis, S. K. (1990) · Annals of the Missouri Botanical Garden · doi:10.2307/2399621 · Cited by 453 · see citing works
A critical view on transgenerational epigenetic inheritance in humans
Horsthemke, B. (2018) · Nature Communications · doi:10.1038/s41467-018-05445-5 · Cited by 349 · see citing works
The tiger genome and comparative analysis with lion and snow leopard genomes
Cho, Y. S., Hu, L., Hou, H., Lee, H., Xu, J., Kwon, S., Oh, S., Kim, H.-M., Jho, S., Kim, S., et al. (2013) · Nature Communications · doi:10.1038/ncomms3433 · Cited by 312 · see citing works
Nuclear genomic sequences reveal that polar bears are an old and distinct bear lineage
Hailer, F., Kutschera, V. E., Hallström, B. M., Klassert, D., Fain, S. R., Leonard, J. A., Arnason, U., & Janke, A. (2012) · Science · doi:10.1126/science.1216424 · Cited by 308 · see citing works
Screening mammal biodiversity using DNA from leeches
Schnell, I. B., Thomsen, P. F., Wilkinson, N., Rasmussen, M., Jensen, L. R. D., Willerslev, E., Bertelsen, M. F., & Gilbert, M. T. P. (2012) · Current Biology · doi:10.1016/j.cub.2012.02.058 · Cited by 240 · see citing works
Complete mitochondrial genome of a Pleistocene jawbone unveils the origin of polar bear
Lindqvist, C., Schuster, S. C., Sun, Y., Talbot, S. L., Qi, J., Ratan, A., Tomsho, L. P., Kasson, L., Zeyl, E., Aars, J., et al. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0914266107 · Cited by 193 · see citing works
Ancestry-specific recent effective population size in the Americas
Browning, S. R., Browning, B. L., Daviglus, M. L., Durazo-Arvizu, R. A., Schneiderman, N., Kaplan, R. C., & Laurie, C. C. (2018) · PLOS Genetics · doi:10.1371/journal.pgen.1007385 · Cited by 187 · see citing works
Hobbs, R. J., & Mooney, H. A. (1998) · Conservation Biology · doi:10.1046/j.1523-1739.1998.96233.x · Cited by 185 · see citing works
Steiner, K. C., Westbrook, J. W., Hebard, F. V., Georgi, L. L., Powell, W. A., & Fitzsimmons, S. F. (2017) · New Forests · doi:10.1007/s11056-016-9561-5 · Cited by 171 · see citing works
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Tiger colour morphs in zoos raise conservation and welfare concerns
Erzinçlioğlu, T. S., Piaz, M. T., Chinpilas, T., Hunnestad, A. V., Godfrey, L., & Fourage, A. (2026) · Discover Animals · doi:10.1007/s44338-026-00163-5
- Authors
- Allendorf, F. W., Funk, W. C., Aitken, S. N., Byrne, M., Luikart, G., & Antunes, A.
- Affiliations
- University of Montana (US)
- Colorado State University (US)
- University of British Columbia (CA)
- Government of Western Australia (AU)
- ORCID
- Publisher
- Oxford University PressOxford
- Published
- 2022-02-10
- OpenAlex
- W4224274233
- Cited by
- 207
- References
- 33
- Citations by year
- 2026: 51 · 2025: 50 · 2024: 48 · 2023: 36 · 2022: 19 · 2021: 2 · 2017: 1
- FWCI
- 43.87
- Type
- book
- Language
- en
- Open access
- closed
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetic diversity and population structure
- Physical Sciences › Environmental Science › Ecology › Wildlife Ecology and Conservation
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetic and phenotypic traits in livestock
- Keywords
- conservation genetics, population genomics, genetic variation, phenotypic variability, evolutionary change, genetic monitoring, endangered species conservation, captive populations, climate change, emerging infectious diseases, metagenomics, biodiversity loss, population management
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