Somaclonal Variation in Plants: Causes and Detection Methods

Bairu, Michael W.; Aremu, Adeyemi O.; Van Staden, Johannes

doi:10.1007/s10725-010-9554-x

Cited by 676Plant tissue culture and regenerationPlant Genetic and Mutation StudiesBanana Cultivation and Research

Somaclonal Variation in Plants: Causes and Detection Methods

Bairu, Michael W., Aremu, Adeyemi O., Van Staden, Johannes·2011·Plant Growth Regulation

DOI 10.1007/s10725-010-9554-x

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Somaclonal variation is unpredictable and uncontrollable.
“Somaclonal variation is unpredictable and uncontrollable, and most of the variation has no direct agronomic or commercial significance [26].”
From Somaclonal Variation and Clonal Fidelity in Commercial Micropropagation: Challenges and Perspectives (2025) · cites this paper as [26]
Most somaclonal variation has no direct agronomic or commercial significance.
“Somaclonal variation is unpredictable and uncontrollable, and most of the variation has no direct agronomic or commercial significance [26].”
From Somaclonal Variation and Clonal Fidelity in Commercial Micropropagation: Challenges and Perspectives (2025) · cites this paper as [26]
Molecular Marker-Assisted Selection (MAS) is a powerful tool for early detection and elimination of somaclonal variants during micropropagation.
“Finally, Molecular Marker-Assisted Selection (MAS) is a powerful tool for early detection and elimination of somaclonal variants during micropropagation [26].”
From Somaclonal Variation and Clonal Fidelity in Commercial Micropropagation: Challenges and Perspectives (2025) · cites this paper as [26]
Various molecular markers such as RAPD, ISSR, AFLP, SSR, and SNPs have been successfully applied for screening and identifying somaclonal variants in different plant species, allowing for maintenance of genetic uniformity and selection of true-to-type regenerants.
“Various molecular markers such as RAPD, ISSR, AFLP, SSR, and SNPs have been successfully applied for screening and identifying somaclonal variants in different plant species [11,26], allowing for the maintenance of genetic uniformity and selection of true-to-type regenerants.”
From Somaclonal Variation and Clonal Fidelity in Commercial Micropropagation: Challenges and Perspectives (2025) · cites this paper as [26]

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Induced polyploidy dramatically increases the size and alters the shape of fruit in Actinidia chinensis
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Non-Zygotic Embryogenesis in Hardwood Species
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Efficient Plastid Transformation in Arabidopsis
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Physiological and developmental problems encountered by in vitro cultured plants
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In planta Transformed Cumin (Cuminum cyminum L.) Plants, Overexpressing the SbNHX1 Gene Showed Enhanced Salt Endurance
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Plant biotechnology in South Africa: Micropropagation research endeavours, prospects and challenges
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In Vitro Propagation, Encapsulation, and Genetic Fidelity Analysis of Terminalia arjuna: a Cardioprotective Medicinal Tree
Gupta, A. K., Harish, Manoj, K., Phulwaria, M., Agarwal, T., & Shekhawat, N. S. (2014) · Applied Biochemistry and Biotechnology · doi:10.1007/s12010-014-0920-4 · Cited by 57 · see citing works
Genome-wide analysis of transcription factors during somatic embryogenesis in banana (Musa spp.) cv. Grand Naine
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Nanoparticles as novel elicitors in plant tissue culture applications: Current status and future outlook
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Shoot regeneration from leaf explants of Withania coagulans (Stocks) Dunal and genetic stability evaluation of regenerates with RAPD and ISSR markers
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Assessment of Genetic Stability and Instability of Tissue Culture-Propagated Plantlets of Aloe vera L. by RAPD and ISSR Markers
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A Concise Review of Dendrocalamus asper and Related Bamboos: Germplasm Conservation, Propagation and Molecular Biology
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Biobanking of vegetable genetic resources by in vitro conservation and cryopreservation
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Abnormal development of floral meristem triggers defective morphogenesis of generative system in transgenic tomatoes
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Micropropagation of a giant ornamental bromeliad Puya berteroniana through adventitious shoots and assessment of their genetic stability through ISSR primers and flow cytometry
Viehmannová, I., Čepková, P. H., Vítámvás, J., Streblova, P., & Kisilova, J. (2016) · Plant Cell Tissue and Organ Culture (PCTOC) · doi:10.1007/s11240-016-0949-x · Cited by 51 · see citing works
Meristem micropropagation of cassava (Manihot esculenta) evokes genome-wide changes in DNA methylation
Kitimu, S. R., Taylor, J., March, T. J., Tairo, F., Wilkinson, M. J., & Rodríguez López, C. M. (2015) · Frontiers in Plant Science · doi:10.3389/fpls.2015.00590 · Cited by 50 · see citing works
An efficient plant regeneration protocol of an industrially important plant, Hedychium coronarium J. Koenig and establishment of genetic & biochemical fidelity of the regenerants
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Ginsenoside accumulation profiles in long- and short-term cell suspension and adventitious root cultures in Panax ginseng
Le, K., Jeong, C.-S., Lee, H., Paek, K., & Park, S. (2018) · Horticulture Environment and Biotechnology · doi:10.1007/s13580-018-0108-x · Cited by 48 · see citing works
Cell suspension culture: A potential in vitro culture method for clonal propagation of coconut plantlets via somatic embryogenesis
Kong, E. Y. Y., Biddle, J., Foale, M., & Adkins, S. W. (2020) · Industrial Crops and Products · doi:10.1016/j.indcrop.2020.112125 · Cited by 48 · see citing works
Physiological differences and changes in global DNA methylation levels in Agave angustifolia Haw. albino variant somaclones during the micropropagation process
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Viability and genetic stability of pineapple germplasm after 10 years of in vitro conservation
da Silva, R. L., Ferreira, C. F., Lédo, C. A. D. S., de Souza, E. H., da Silva, P. H., Costa, M. A. P. D. C., & Souza, F. V. D. (2016) · Plant Cell Tissue and Organ Culture (PCTOC) · doi:10.1007/s11240-016-1035-0 · Cited by 47 · see citing works
Somaclonal Variation and Clonal Fidelity in Commercial Micropropagation: Challenges and Perspectives
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Effect of subculture times on genetic fidelity, endogenous hormone level and pharmaceutical potential of Tetrastigma hemsleyanum callus
Peng, X. X., Zhang, T.-T., & Zhang, J. (2015) · Plant Cell Tissue and Organ Culture (PCTOC) · doi:10.1007/s11240-015-0750-2 · Cited by 46 · see citing works
The role of meta-topolins on the photosynthetic pigment profiles and foliar structures of micropropagated ‘Williams’ bananas
Aremu, A. O., Bairu, M. W., Plíhalová, L., Finnie, J. F., & Staden, J. V. (2012) · Journal of Plant Physiology · doi:10.1016/j.jplph.2012.06.006 · Cited by 45 · see citing works
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Physiological and biochemical analysis of growth abnormalities associated with plant tissue culture
Ruffoni, B., & Savona, M. (2013) · Horticulture Environment and Biotechnology · doi:10.1007/s13580-013-0009-y · Cited by 44 · see citing works
Penetration of nanoparticles in flax (Linum usitatissimum L.) calli and regenerants
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Somaclonal variation in olive ( Olea europaea L.) plants regenerated via somatic embryogenesis: Influence of genotype and culture age on phenotypic stability
Bradaï, F., Pliego-Alfaro, F., & Sánchez-Romero, C. (2016) · Scientia Horticulturae · doi:10.1016/j.scienta.2016.10.031 · Cited by 44 · see citing works
Identification of Bna.IAA7.C05 as allelic gene for dwarf mutant generated from tissue culture in oilseed rape
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Epigenetic changes and their relationship to somaclonal variation: A need to monitor the micropropagation of plantation crops
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Breeding of ornamentals: success and technological status
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In vitro biotechnological approaches on Vanilla planifolia Andrews: advancements and opportunities
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Analysis of somaclonal variation in transgenic and regenerated plants of Arabidopsis thaliana using methylation related metAFLP and TMD markers
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The Status of Setaria viridis Transformation: Agrobacterium-Mediated to Floral Dip
Eck, J. M. V. (2018) · Frontiers in Plant Science · doi:10.3389/fpls.2018.00652 · Cited by 42 · see citing works
Stevia Rebaudiana Bertoni, a Source of High-Potency Natural Sweetener—Biochemical and Genetic Characterization
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Plant regeneration and biochemical accumulation of hydroxybenzoic and hydroxycinnamic acid derivatives in Hypoxis hemerocallidea organ and callus cultures
Moyo, M., Amoo, S. O., Aremu, A. O., Grúz, J., Šubrtová, M., Doležal, K., & Staden, J. V. (2014) · Plant Science · doi:10.1016/j.plantsci.2014.08.003 · Cited by 41 · see citing works
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Authors: Bairu, M. W., Aremu, A. O., & Van Staden, J.
Affiliations: University of KwaZulu-Natal (ZA)
ORCID: Bairu, Michael W.
Aremu, Adeyemi O.
Venue: Plant Growth Regulation
Publisher: Springer Science and Business Media LLC
Published: 2010-12-25
Volume: 63
Issue: 2
Pages: 147-173
ISSN: 0167-6903 (ISSN-L)
1573-5087
DOI: 10.1007/s10725-010-9554-x
OpenAlex: W2054387047
Cited by: 674
References: 313
Citations by year: 2026: 46 · 2025: 54 · 2024: 46 · 2023: 55 · 2022: 61 · 2021: 67 · 2020: 53 · 2019: 34 · 2018: 47 · 2017: 41 · 2016: 37 · 2015: 41 · 2014: 30 · 2013: 30 · 2012: 23
FWCI: 8.08
Type: journal article
Language: en
Open access: closed
Licence: www.springer.com/tdm (tdm)
Locations: Plant Growth Regulation (publishedVersion)
Funders: National Research Foundation
Topics: Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Plant tissue culture and regeneration
Life Sciences › Agricultural and Biological Sciences › Plant Science › Plant Genetic and Mutation Studies
Life Sciences › Agricultural and Biological Sciences › Plant Science › Banana Cultivation and Research
Keywords: somaclonal variation, plant tissue culture, somaclonal variants, plant breeding, plant conservation

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