Cited by 221Microbial Community Ecology and PhysiologyMethane Hydrates and Related PhenomenaGeochemistry and Elemental Analysis

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Bacterial diversity in hydrothermal sediment and epsilonproteobacterial dominance in experimental microcolonizers at the Mid-Atlantic Ridge.

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López‐García, Purificación, Duperron, Sébastien, Philippot, Pascal, Foriel, Julien, Susini, Jean, Moreira, David·2003·Environmental Microbiology

DOI 10.1046/j.1462-2920.2003.00495.x

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Abstract

We report here a molecular survey based on 16S rRNA genes of the bacterial diversity found in two deep-sea vent niches at the Mid-Atlantic Ridge: hydrothermal sediment (Rainbow site), and microcolonizers made of three different substrates (organic-rich, iron-rich and pumice) that were exposed for 15 days to a vent emission. Bacterial diversity in sediment samples was scattered through many bacterial divisions. The most abundant and diverse environmental sequences (phylotypes) in our libraries corresponded to the Gammaproteobacteria, followed by the Acidobacteria. We detected members of all the subdivisions within the Proteobacteria. Myxobacterial lineages were the most represented within the delta subdivision. Phylotypes ascribing to the Cytophaga-Flavobacterium-Bacteroides, Planctomycetales, high and low G + C Gram-positives, Nitrospirae, and the candidate division TM7 were also identified. Compared to this broad taxonomic coverage, microcolonizers were almost exclusively colonized by epsilonproteobacteria, although these exhibited considerable morphological and phylogenetic in-group diversity. No specificity for any of the substrates tested was seen. This observation further supports the idea of the ecological dominance of epsilonproteobacteria in the fluid-seawater interface environment. Because oxidation of reduced S species and/or sulphur-reduction is thought to be essential for their energetic metabolism in these areas, we mapped different oxidation states of S in individual bacterial filaments from the iron-rich microcolonizer. For this, we used high-resolution, non-destructive synchrotron micro-X-ray Absorption Near-Edge Spectroscopy (micro-XANES), which revealed the co-existence of different S oxidation states, from sulphide to sulphate, at the level of individual cells. This suggests that these cells were metabolizing sulphur in situ.

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Authors: López‐García, P., Duperron, S., Philippot, P., Foriel, J., Susini, J., & Moreira, D.
Affiliations: Université Paris-Sud (FR)
Centre National de la Recherche Scientifique (FR)
European Synchrotron Radiation Facility (FR)
ORCID: López‐García, Purificación
Duperron, Sébastien
Philippot, Pascal
Foriel, Julien
Susini, Jean
Moreira, David
Venue: Environmental Microbiology
Publisher: Wiley
Published: 2003-08-14
Volume: 5
Issue: 10
Pages: 961-976
ISSN: 1462-2912 (ISSN-L)
1462-2920
DOI: 10.1046/j.1462-2920.2003.00495.x
OpenAlex: W2139989406
Cited by: 221
References: 67
Citations by year: 2026: 3 · 2025: 2 · 2023: 7 · 2022: 9 · 2021: 2 · 2020: 6 · 2019: 8 · 2018: 13 · 2017: 8 · 2016: 7 · 2015: 10 · 2014: 17 · 2013: 15 · 2012: 10
FWCI: 10.82
Type: journal article
Language: en
Open access: bronze
doi.org
Licence: onlinelibrary.wiley.com/termsAndConditions#vor (vor)
Locations: Environmental Microbiology (publishedVersion)
PubMed (publishedVersion)
HAL (submittedVersion)
DIAL (Catholic University of Leuven) (submittedVersion)
Funders: European Synchrotron Radiation Facility
Centre National de la Recherche Scientifique
Topics: Physical Sciences › Environmental Science › Ecology › Microbial Community Ecology and Physiology
Physical Sciences › Environmental Science › Environmental Chemistry › Methane Hydrates and Related Phenomena
Physical Sciences › Earth and Planetary Sciences › Geochemistry and Petrology › Geochemistry and Elemental Analysis
Keywords: bacterial diversity, hydrothermal sediments, Epsilonproteobacteria, Mid-Atlantic Ridge, deep-sea hydrothermal vents, Gammaproteobacteria, Acidobacteria, sulfur reduction
MeSH terms: Atlantic Ocean, Hot Temperature, Iron, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S, Seawater, Spectrum Analysis, Genetic Variation, Water Microbiology, Likelihood Functions, Silicates, Geologic Sediments, Gammaproteobacteria, Epsilonproteobacteria

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Bacterial diversity in hydrothermal sediment and epsilonproteobacterial dominance in experimental microcolonizers at the Mid-Atlantic Ridge.

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