Cited by 221Microbial Community Ecology and PhysiologyMethane Hydrates and Related PhenomenaGeochemistry and Elemental Analysis

The DOI matches its Crossref record; 67 of the 67 references it cites were found in a registry or an index.

Bacterial diversity in hydrothermal sediment and epsilonproteobacterial dominance in experimental microcolonizers at the Mid-Atlantic Ridge.

Open access

López‐García, Purificación, Duperron, Sébastien, Philippot, Pascal, Foriel, Julien, Susini, Jean, Moreira, David·2003·Environmental Microbiology

DOI 10.1046/j.1462-2920.2003.00495.x

Open this paper in CoChat — free account Open PDF

Abstract

We report here a molecular survey based on 16S rRNA genes of the bacterial diversity found in two deep-sea vent niches at the Mid-Atlantic Ridge: hydrothermal sediment (Rainbow site), and microcolonizers made of three different substrates (organic-rich, iron-rich and pumice) that were exposed for 15 days to a vent emission. Bacterial diversity in sediment samples was scattered through many bacterial divisions. The most abundant and diverse environmental sequences (phylotypes) in our libraries corresponded to the Gammaproteobacteria, followed by the Acidobacteria. We detected members of all the subdivisions within the Proteobacteria. Myxobacterial lineages were the most represented within the delta subdivision. Phylotypes ascribing to the Cytophaga-Flavobacterium-Bacteroides, Planctomycetales, high and low G + C Gram-positives, Nitrospirae, and the candidate division TM7 were also identified. Compared to this broad taxonomic coverage, microcolonizers were almost exclusively colonized by epsilonproteobacteria, although these exhibited considerable morphological and phylogenetic in-group diversity. No specificity for any of the substrates tested was seen. This observation further supports the idea of the ecological dominance of epsilonproteobacteria in the fluid-seawater interface environment. Because oxidation of reduced S species and/or sulphur-reduction is thought to be essential for their energetic metabolism in these areas, we mapped different oxidation states of S in individual bacterial filaments from the iron-rich microcolonizer. For this, we used high-resolution, non-destructive synchrotron micro-X-ray Absorption Near-Edge Spectroscopy (micro-XANES), which revealed the co-existence of different S oxidation states, from sulphide to sulphate, at the level of individual cells. This suggests that these cells were metabolizing sulphur in situ.

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

Integrity signals

Registry

Crossref · 10.1046/j.1462-2920.2003.00495.x

Cites

67 of 67 references verified0 citation errors · 0 not checkable

Statistics

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
Altschul, S. (1997) · Nucleic Acids Research · doi:10.1093/nar/25.17.3389 · Cited by 73,302
Brock Biology of Microorganisms
Madigan, M. T., Bender, K. S., Buckley, D. H., Sattley, W. M., & Stahl, D. A. (1996) · Cited by 5,759
The ribosomal database project
Larsen, N., Olsen, G. J., Maidak, B. L., McCaughey, M. J., Overbeek, R., Macke, T. J., Marsh, T. L., & Woese, C. R. (1993) · Nucleic Acids Research · doi:10.1093/nar/21.13.3021 · Cited by 1,558
The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy
Cole, J. R. (2003) · Nucleic Acids Research · doi:10.1093/nar/gkg039 · Cited by 1,435
WWW
Sadagopan, S. (2002) · Ubiquity · doi:10.1145/504689.504690 · Cited by 1,393
SAR11 clade dominates ocean surface bacterioplankton communities
Morris, R. M., Rappé, M. S., Connon, S. A., Vergin, K. L., Siebold, W. A., Carlson, C. A., & Giovannoni, S. J. (2002) · Nature · doi:10.1038/nature01240 · Cited by 1,129
Phylogenetic relationships of Thiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gel electrophoresis of 16S rDNA fragments
Muyzer, G., Teske, A., Wirsen, C. O., & Jannasch, H. W. (1995) · Archives of Microbiology · doi:10.1007/bf02529967 · Cited by 1,121
Brock Biology of Microorganisms
Madigan (2000) · Cited by 1,106
Microbial Ecology and Evolution: A Ribosomal RNA Approach
Olsen, G. J., Lane, D. J., Giovannoni, S. J., Pace, N. R., & Stahl, D. A. (1986) · Annual Review of Microbiology · doi:10.1146/annurev.mi.40.100186.002005 · Cited by 1,078
The habitat and nature of early life
Nisbet, E. G., & Sleep, N. H. (2001) · Nature · doi:10.1038/35059210 · Cited by 930

Show all 67 references

Research works printed but not linked: 2

Kuenen J.G. Robertson L.A. andTuovinen O.H.(1992)The generaThiobacillus ThiomicrospiraandThiosphaera. InThe Genera Thiobacillus Thiomicrospira and Thiosphaera.Balows A. Trüper H.G. Dworkin M. HarderW. andSchleifer K.H.(eds).Vol. III New York:Springer‐Verlag.
Philippot P., 2002, Imaging sulfur‐metabolism activities in individual filamentous microfossils, Highlights ESRF, 2002, 85

Sorted by citations

Three Genomes from the Phylum Acidobacteria Provide Insight into the Lifestyles of These Microorganisms in Soils
Ward, N. L., Challacombe, J. F., Janssen, P. H., Henrissat, B., Coutinho, P. M., Wu, M., Xie, G. G., Haft, D. H., Sait, M. L., Badger, J. H., et al. (2009) · Applied and Environmental Microbiology · doi:10.1128/aem.02294-08 · Cited by 1,007
Overview of the Marine Roseobacter Lineage
Buchan, A., González, J. M., & Moran, M. A. (2005) · Applied and Environmental Microbiology · doi:10.1128/aem.71.10.5665-5677.2005 · Cited by 846
The versatile ε-proteobacteria: key players in sulphidic habitats
Campbell, B. J., Engel, A. S., Porter, M. L., & Takai, K. (2006) · Nature Reviews Microbiology · doi:10.1038/nrmicro1414 · Cited by 671
Sulfur-driven autotrophic denitrification: diversity, biochemistry, and engineering applications
Shao, M.-F., Zhang, T., & Fang, H. H. P. (2010) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-010-2847-1 · Cited by 428
Methane- and Sulfur-Metabolizing Microbial Communities Dominate the Lost City Hydrothermal Field Ecosystem
Brazelton, W. J., Schrenk, M. O., Kelley, D. S., & Baross, J. A. (2006) · Applied and Environmental Microbiology · doi:10.1128/aem.00574-06 · Cited by 417
Distribution, phylogenetic diversity and physiological characteristics of epsilon‐ Proteobacteria in a deep‐sea hydrothermal field
Nakagawa, S., Takai, K., Inagaki, F., Hirayama, H., Nunoura, T., Horikoshi, K., & Sako, Y. (2005) · Environmental Microbiology · doi:10.1111/j.1462-2920.2005.00856.x · Cited by 272
Structure of Sediment-Associated Microbial Communities along a Heavy-Metal Contamination Gradient in the Marine Environment
Gillan, D. C., Danis, B., Pernet, P., Joly-Turquin, G., & Dubois, P. (2005) · Applied and Environmental Microbiology · doi:10.1128/aem.71.2.679-690.2005 · Cited by 219
Acidobacteria , Rubrobacteridae and Chloroflexi are abundant among very slow‐growing and mini‐colony‐forming soil bacteria
Davis, K. E. R., Sangwan, P., & Janssen, P. H. (2010) · Environmental Microbiology · doi:10.1111/j.1462-2920.2010.02384.x · Cited by 204
Enzymatic and Genetic Characterization of Carbon and Energy Metabolisms by Deep-Sea Hydrothermal Chemolithoautotrophic Isolates ofEpsilonproteobacteria
Takai, K., Campbell, B. J., Cary, S. C., Suzuki, M., Oida, H., Nunoura, T., Hirayama, H., Nakagawa, S., Suzuki, Y., Inagaki, F., et al. (2005) · Applied and Environmental Microbiology · doi:10.1128/aem.71.11.7310-7320.2005 · Cited by 201
Contrasting community assembly processes structure lotic bacteria metacommunities along the river continuum
Gweon, H. S., Bowes, M. J., Moorhouse, H. L., Oliver, A., Bailey, M., Acreman, M. C., & Read, D. S. (2020) · Environmental Microbiology · doi:10.1111/1462-2920.15337 · Cited by 197
Bacterial diversity and ecosystem function of filamentous microbial mats from aphotic (cave) sulfidic springs dominated by chemolithoautotrophic “Epsilonproteobacteria”
Engel, A. S., Porter, M. L., Stern, L. A., Quinlan, S. F., & Bennett, P. C. (2004) · FEMS Microbiology Ecology · doi:10.1016/j.femsec.2004.07.004 · Cited by 196
Isolation of novel bacteria, including a candidate division, from geothermal soils in New Zealand
Stott, M. B., Crowe, M. A., Mountain, B. W., Smirnova, A. V., Hou, S., Alam, M. S., & Dunfield, P. F. (2008) · Environmental Microbiology · doi:10.1111/j.1462-2920.2008.01621.x · Cited by 190
Variability in microbial community and venting chemistry in a sediment-hosted backarc hydrothermal system: Impacts of subseafloor phase-separation
Nakagawa, S., Takai, K., Inagaki, F., Chiba, H., Ishibashi, J.-I., Kataoka, S., Hirayama, H., Nunoura, T., Horikoshi, K., & Sako, Y. (2005) · FEMS Microbiology Ecology · doi:10.1016/j.femsec.2005.03.007 · Cited by 183
Chemoautotrophy at Deep-Sea Vents: Past, Present, and Future
Sievert, S. M., & Vetriani, C. (2012) · Oceanography · doi:10.5670/oceanog.2012.21 · Cited by 183
Niche partitioning of diverse sulfur-oxidizing bacteria at hydrothermal vents.
Meier, D. V., Pjevac, P., Bach, W., Hourdez, S., Girguis, P. R., Vidoudez, C., Amann, R., & Meyerdierks, A. (2017) · The ISME Journal · doi:10.1038/ismej.2017.37 · Cited by 177
Geochemical Constraints on Sources of Metabolic Energy for Chemolithoautotrophy in Ultramafic-Hosted Deep-Sea Hydrothermal Systems
McCollom, T. M. (2007) · Astrobiology · doi:10.1089/ast.2006.0119 · Cited by 172
Culture independent molecular analysis of bacterial communities in the mangrove sediment of Sundarban, India
Ghosh, A., Dey, N., Bera, A., Tiwari, A. K., Sathyaniranjan, K., Chakrabarti, K., & Chattopadhyay, D. (2010) · Saline Systems · doi:10.1186/1746-1448-6-1 · Cited by 167
The Organic-Mineral Interface in Biominerals
Gilbert, P., Abrecht, M., & Frazer, B. (2005) · Reviews in Mineralogy and Geochemistry · doi:10.2138/rmg.2005.59.7 · Cited by 163
Deep-Sea Hydrothermal Vents: Potential Hot Spots for Natural Products Discovery?
Thornburg, C. C., Zabriskie, T. M., & McPhail, K. L. (2010) · Journal of Natural Products · doi:10.1021/np900662k · Cited by 149
Archaeal and bacterial community composition of sediment and plankton from a suboxic freshwater pond
Briée, C., Moreira, D., & López‐García, P. (2007) · Research in Microbiology · doi:10.1016/j.resmic.2006.12.012 · Cited by 145
Self-citation
Microbial Diversity in Caves
Tomczyk‐Żak, K., & Zielenkiewicz, U. (2015) · Geomicrobiology Journal · doi:10.1080/01490451.2014.1003341 · Cited by 142
Microbial Community Diversity Associated with Carbon and Nitrogen Cycling in Permeable Shelf Sediments
Hunter, E. M., Mills, H. J., & Kostka, J. E. (2006) · Applied and Environmental Microbiology · doi:10.1128/aem.03007-05 · Cited by 141
Detection and Phylogenetic Relationships of Highly Diverse Uncultured Acidobacterial Communities in Altamira Cave Using 23S rRNA Sequence Analyses
Zimmermann, J., Grau, J. M. G., Sáiz‐Jiménez, C., & Ludwig, W. (2005) · Geomicrobiology Journal · doi:10.1080/01490450500248986 · Cited by 139
Phylum XIV. Bacteroidetes phyl. nov.
Krieg, N. R., Ludwig, W., Euzéby, J. P., & Whitman, W. B. (2010) · Springer eBooks · doi:10.1007/978-0-387-68572-4_3 · Cited by 135
Occurrence and Diversity of Yeasts in the Mid-Atlantic Ridge Hydrothermal Fields Near the Azores Archipelago
Gadanho, M., & Sampaio, J. P. (2005) · Microbial Ecology · doi:10.1007/s00248-005-0195-y · Cited by 134
Nitratiruptor tergarcus gen. nov., sp. nov. and Nitratifractor salsuginis gen. nov., sp. nov., nitrate-reducing chemolithoautotrophs of the ε-Proteobacteria isolated from a deep-sea hydrothermal system in the Mid-Okinawa Trough
Nakagawa, S., Takai, K., Inagaki, F., Horikoshi, K., & Sako, Y. (2005) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/ijs.0.63480-0 · Cited by 124
Bacterial and archaeal phylotypes associated with distinct mineralogical layers of a white smoker spire from a deep‐sea hydrothermal vent site (9°N, East Pacific Rise)
Kormas, K. A., Tivey, M. K., Damm, K. L. V., & Teske, A. (2006) · Environmental Microbiology · doi:10.1111/j.1462-2920.2005.00978.x · Cited by 123
Molecular characterization of putative biocorroding microbiota with a novel niche detection of Epsilon ‐ and Zetaproteobacteria in Pacific Ocean coastal seawaters
Dang, H., Chen, R., Wang, L., Shao, S., Dai, L., Ye, Y., Guo, L., Huang, G., & Klotz, M. G. (2011) · Environmental Microbiology · doi:10.1111/j.1462-2920.2011.02583.x · Cited by 121
Isolation and characterization of a moderately thermophilic nitrite-oxidizing bacterium from a geothermal spring
Lebedeva, E. V., Off, S., Zumbrägel, S., Kruse, M., Shagzhina, A., Lücker, S., Maixner, F., Lipski, A., Daims, H., & Spieck, E. (2010) · FEMS Microbiology Ecology · doi:10.1111/j.1574-6941.2010.01006.x · Cited by 117
Phylogeny of Proteobacteria and Bacteroidetes from oxic habitats of a tidal flat ecosystem
Stevens, H., bner, M. S. ⁄., Simon, M., & Brinkhoff, T. (2005) · FEMS Microbiology Ecology · doi:10.1016/j.femsec.2005.04.008 · Cited by 111
Novel Chemoautotrophic Endosymbiosis between a Member of the Epsilonproteobacteria and the Hydrothermal-Vent Gastropod Alviniconcha aff. hessleri (Gastropoda: Provannidae) from the Indian Ocean
Suzuki, Y., Sasaki, T., Suzuki, M., Nogi, Y., Miwa, T., Takai, K., Nealson, K. H., & Horikoshi, K. (2005) · Applied and Environmental Microbiology · doi:10.1128/aem.71.9.5440-5450.2005 · Cited by 110
Isolation of novel bacteria within the Chloroflexi capable of reductive dechlorination of 1,2,3‐trichloropropane
Yan, J., Rash, B. A., Rainey, F. A., & Moe, W. M. (2008) · Environmental Microbiology · doi:10.1111/j.1462-2920.2008.01804.x · Cited by 108
The Majority of Active Rhodobacteraceae in Marine Sediments Belong to Uncultured Genera: A Molecular Approach to Link Their Distribution to Environmental Conditions
Pohlner, M., Dlugosch, L., Wemheuer, B., Mills, H. J., Engelen, B., & Reese, B. K. (2019) · Frontiers in Microbiology · doi:10.3389/fmicb.2019.00659 · Cited by 105
16S rRNA gene analyses of bacterial community structures in the soils of evergreen broad-leaved forests in south-west China
Chan, O.-C., Yang, X., Fu, Y., Feng, Z., Sha, L., Casper, P., & Zou, X. (2006) · FEMS Microbiology Ecology · doi:10.1111/j.1574-6941.2006.00156.x · Cited by 107
Biogeography and Biodiversity in Sulfide Structures of Active and Inactive Vents at Deep-Sea Hydrothermal Fields of the Southern Mariana Trough
Kato, S., Takano, Y., Kakegawa, T., Oba, H., Inoue, K., Kobayashi, C., Utsumi, M., Marumo, K., Kobayashi, K., Ito, Y., et al. (2010) · Applied and Environmental Microbiology · doi:10.1128/aem.00478-10 · Cited by 103
The diversity and abundance of bacteria inhabiting seafloor lavas positively correlate with rock alteration
Santelli, C. M., Edgcomb, V. P., Bach, W., & Edwards, K. J. (2008) · Environmental Microbiology · doi:10.1111/j.1462-2920.2008.01743.x · Cited by 101
Constraints on the sources of branched tetraether membrane lipids in distal marine sediments
Weijers, J. W. H., Schefuß, E., Kim, J.-H., Damsté, J. S. S., & Schouten, S. (2014) · Organic Geochemistry · doi:10.1016/j.orggeochem.2014.04.011 · Cited by 105
Molecular analyses of microbial diversity associated with the Lonar soda lake in India: An impact crater in a basalt area
Wani, A. A., Surakasi, V. P., Siddharth, J., Raghavan, R. G., Patole, M. S., Ranade, D. R., & Shouche, Y. S. (2006) · Research in Microbiology · doi:10.1016/j.resmic.2006.08.005 · Cited by 100
Diversity of Bacteria and Archaea associated with a carbonate‐rich metalliferous sediment sample from the Rainbow vent field on the Mid‐Atlantic Ridge
Nercessian, O., Fouquet, Y., Pierre, C., Prieur, D., & Jeanthon, C. (2005) · Environmental Microbiology · doi:10.1111/j.1462-2920.2005.00744.x · Cited by 98
Recent developments in the thermophilic microbiology of deep-sea hydrothermal vents
Miroshnichenko, M. L., & Bonch-Osmolovskaya, E. A. (2006) · Extremophiles · doi:10.1007/s00792-005-0489-5 · Cited by 97
The influence of ultramafic rocks on microbial communities at the Logatchev hydrothermal field, located 15°N on the Mid-Atlantic Ridge
Perner, M., Kuever, J., Seifert, R., Pape, T., Koschinsky, A., Schmidt, K., Strauß, H., & Imhoff, J. F. (2007) · FEMS Microbiology Ecology · doi:10.1111/j.1574-6941.2007.00325.x · Cited by 95
Diversity, Biogeography, and Biodegradation Potential of Actinobacteria in the Deep-Sea Sediments along the Southwest Indian Ridge
Chen, P., Zhang, L., Guo, X., Dai, X., Liu, L., Xi, L., Wang, J., Song, L., Wang, Y., Zhu, Y., et al. (2016) · Frontiers in Microbiology · doi:10.3389/fmicb.2016.01340 · Cited by 94
Caminibacter mediatlanticus sp. nov., a thermophilic, chemolithoautotrophic, nitrate-ammonifying bacterium isolated from a deep-sea hydrothermal vent on the Mid-Atlantic Ridge
Voordeckers, J. W., Starovoytov, V., & Vetriani, C. (2005) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/ijs.0.63430-0 · Cited by 91
Deep-sea hydrothermal vent Epsilonproteobacteria encode a conserved and widespread nitrate reduction pathway (Nap)
Vetriani, C., Voordeckers, J. W., Crespo‐Medina, M., O’Brien, C. E., Giovannelli, D., & Lutz, R. A. (2014) · The ISME Journal · doi:10.1038/ismej.2013.246 · Cited by 87
PKS and NRPS gene clusters from microbial symbiont cells of marine sponges by whole genome amplification
Siegl, A., & Hentschel, U. (2009) · Environmental Microbiology Reports · doi:10.1111/j.1758-2229.2009.00057.x · Cited by 89
Acquisition of epibiotic bacteria along the life cycle of the hydrothermal shrimp Rimicaris exoculata
Guri, M., Durand, L., Cueff-Gauchard, V., Zbinden, M., Crassous, P., Shillito, B., & Cambon-Bonavita, M.-A. (2012) · The ISME Journal · doi:10.1038/ismej.2011.133 · Cited by 87
Sponge-specific Bacterial Associations of the Mediterranean Sponge Chondrilla nucula (Demospongiae, Tetractinomorpha)
Thiel, V., Leininger, S., Schmaljohann, R., Brümmer, F., & Imhoff, J. F. (2007) · Microbial Ecology · doi:10.1007/s00248-006-9177-y · Cited by 87
Microbial ecology of mid-ocean ridges and back-arc basins
Takai, K., Nakagawa, S., Reysenbach, A., & Hoek, J. (2006) · Geophysical monograph · doi:10.1029/166gm10 · Cited by 85
Identification of novel perchloroethene‐respiring microorganisms in anoxic river sediment by RNA‐based stable isotope probing
Kittelmann, S., & Friedrich, M. W. (2007) · Environmental Microbiology · doi:10.1111/j.1462-2920.2007.01427.x · Cited by 84
Wetland management using microbial indicators
Urakawa, H., & Bernhard, A. (2017) · Ecological Engineering · doi:10.1016/j.ecoleng.2017.07.022 · Cited by 74
Effects of nutrient loading on sediment bacterial and pathogen communities within seagrass meadows
Liu, S., Jiang, Z., Deng, Y., Wu, Y., Zhang, J., Zhao, C., Huang, D., Huang, X., & Trevathan‐Tackett, S. M. (2018) · MicrobiologyOpen · doi:10.1002/mbo3.600 · Cited by 82
Extreme spatial and temporal variability of hydrothermal microbial mat communities along the Mariana Island Arc and southern Mariana back‐arc system
Davis, R. E., & Moyer, C. L. (2008) · Journal of Geophysical Research Atmospheres · doi:10.1029/2007jb005413 · Cited by 82
Identification of a Novel Toluene-Degrading Bacterium from the Candidate Phylum TM7, as Determined by DNA Stable Isotope Probing
Luo, C., Xie, S., Sun, W., Li, X. D., & Cupples, A. M. (2009) · Applied and Environmental Microbiology · doi:10.1128/aem.00283-09 · Cited by 81
Pathways of carbon and energy metabolism of the epibiotic community associated with the deep-sea hydrothermal vent shrimp Rimicaris exoculata.
Hügler, M., Petersen, J. M., Dubilier, N., Imhoff, J. F., & Sievert, S. M. (2011) · PLoS ONE · doi:10.1371/journal.pone.0016018 · Cited by 80
The phylogeny of endolithic microbes associated with marine basalts
Mason, O. U., Stingl, U., Wilhelm, L., Moeseneder, M. M., Meo-Savoie, C. A. D., Fisk, M. R., & Giovannoni, S. J. (2007) · Environmental Microbiology · doi:10.1111/j.1462-2920.2007.01372.x · Cited by 77
Microbial Community Structure of Deep-sea Hydrothermal Vents on the Ultraslow Spreading Southwest Indian Ridge
Ding, J., Zhang, Y., Wang, H., Jian, H., Leng, H., & Xiao, X. (2017) · Frontiers in Microbiology · doi:10.3389/fmicb.2017.01012 · Cited by 74
Bacterial Community Structure of Sediments of the Bizerte Lagoon (Tunisia), a Southern Mediterranean Coastal Anthropized Lagoon
Saïd, O. B., Goñi‐Urriza, M., Bour, M. E., Aïssa, P., & Duran, R. (2009) · Microbial Ecology · doi:10.1007/s00248-009-9585-x · Cited by 73
Multiple self-splicing introns in the 16S rRNA genes of giant sulfur bacteria
Salman, V., Amann, R., Shub, D. A., & Schulz‐Vogt, H. N. (2012) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1120192109 · Cited by 74
Assessing the Diversity and Distribution of Apicomplexans in Host and Free-Living Environments Using High-Throughput Amplicon Data and a Phylogenetically Informed Reference Framework
del Campo, J., Heger, T. J., Rodríguez‐Martínez, R., Worden, A. Z., Richards, T. A., Massana, R., & Keeling, P. J. (2019) · Frontiers in Microbiology · doi:10.3389/fmicb.2019.02373 · Cited by 77
Microbial Ecology of Mid‐Ocean Ridges and Back‐Arc Basins
Takai, K., Nakagawa, S., Reysenbach, A., & Hoek, J. (2013) · doi:10.1002/9781118666180.ch9 · Cited by 69
Diversity and phylogenetic analyses of bacteria from a shallow-water hydrothermal vent in Milos island (Greece)
Giovannelli, D., d’Errico, G., Manini, E., Yakimov, M. M., & Vetriani, C. (2013) · Frontiers in Microbiology · doi:10.3389/fmicb.2013.00184 · Cited by 69
Bacterioplankton assemblages transforming dissolved organic compounds in coastal seawater
Mou, X., Hodson, R. E., & Moran, M. A. (2007) · Environmental Microbiology · doi:10.1111/j.1462-2920.2007.01318.x · Cited by 68
Phylogenetic and morphologic complexity of giant sulphur bacteria
Salman, V., Bailey, J. V., & Teske, A. (2013) · Antonie van Leeuwenhoek · doi:10.1007/s10482-013-9952-y · Cited by 68
Microbial CO 2 fixation and sulfur cycling associated with low‐temperature emissions at the Lilliput hydrothermal field, southern Mid‐Atlantic Ridge (9°S)
Perner, M., Seifert, R., Weber, S., Koschinsky, A., Schmidt, K., Strauß, H., Peters, M., Haase, K. M., & Imhoff, J. F. (2007) · Environmental Microbiology · doi:10.1111/j.1462-2920.2007.01241.x · Cited by 68
Microbial Transformations of Minerals and Metals: Recent Advances in Geomicrobiology Derived from Synchrotron-Based X-Ray Spectroscopy and X-Ray Microscopy
Templeton, A., & Knowles, E. (2009) · Annual Review of Earth and Planetary Sciences · doi:10.1146/annurev.earth.36.031207.124346 · Cited by 68
Functional interactions among filamentous E psilonproteobacteria and B acteroidetes in a deep‐sea hydrothermal vent biofilm
Stokke, R., Dahle, H., Roalkvam, I., Wissuwa, J., Daae, F. L., Tooming‐Klunderud, A., Thorseth, I. H., Pedersen, R. B., & Steen, I. H. (2015) · Environmental Microbiology · doi:10.1111/1462-2920.12970 · Cited by 63
Microbial consumption of zero‐valence sulfur in marine benthic habitats
Pjevac, P., Kamyshny, A., Dyksma, S., & Mußmann, M. (2014) · Environmental Microbiology · doi:10.1111/1462-2920.12410 · Cited by 63
Diversity and genomic insights into the uncultured C hloroflexi from the human microbiota
Campbell, A. G., Schwientek, P., Vishnivetskaya, T. A., Woyke, T., Levy, S., Beall, C. J., Griffen, A. L., Leys, E. J., & Podar, M. (2014) · Environmental Microbiology · doi:10.1111/1462-2920.12461 · Cited by 62
A hydrogenotrophic Sulfurimonas is globally abundant in deep-sea oxygen-saturated hydrothermal plumes
Molari, M., Hassenrueck, C., Laso-Pérez, R., Wegener, G., Offre, P., Scilipoti, S., & Boëtius, A. (2023) · Nature Microbiology · doi:10.1038/s41564-023-01342-w · Cited by 60
Comparison of microbial communities associated with three Atlantic ultramafic hydrothermal systems
Roussel, E. G., Konn, C., Charlou, J., Donval, J., Fouquet, Y., Quérellou, J., Prieur, D., & Cambon‐Bonavita, M. (2011) · FEMS Microbiology Ecology · doi:10.1111/j.1574-6941.2011.01161.x · Cited by 56
Contrasting Network Features between Free-Living and Particle-Attached Bacterial Communities in Taihu Lake
Xu, H., Zhao, D., Huang, R., Cao, X., Zeng, J., Yu, Z., Hooker, K. V., Hambright, K. D., & Wu, Q. L. (2018) · Microbial Ecology · doi:10.1007/s00248-017-1131-7 · Cited by 56
Metagenomic evidence for sulfur lithotrophy by Epsilonproteobacteria as the major energy source for primary productivity in a sub-aerial arctic glacial deposit, Borup Fiord Pass
Wright, K. E., Williamson, C. H. D., Grasby, S. E., Spear, J. R., & Templeton, A. S. (2013) · Frontiers in Microbiology · doi:10.3389/fmicb.2013.00063 · Cited by 56
Novel uncultured Epsilonproteobacteria dominate a filamentous sulphur mat from the 13°N hydrothermal vent field, East Pacific Rise
Moussard, H., Corre, E., Cambon‐Bonavita, M., Fouquet, Y., & Jeanthon, C. (2006) · FEMS Microbiology Ecology · doi:10.1111/j.1574-6941.2006.00192.x · Cited by 54
Thioreductor micantisoli gen. nov., sp. nov., a novel mesophilic, sulfur-reducing chemolithoautotroph within the ε-Proteobacteria isolated from hydrothermal sediments in the Mid-Okinawa Trough
Nakagawa, S., Inagaki, F., Takai, K., Horikoshi, K., & Sako, Y. (2005) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/ijs.0.63351-0 · Cited by 54
Bacterial sulfur cycling shapes microbial communities in surface sediments of an ultramafic hydrothermal vent field
Schauer, R., Røy, H., Augustin, N., Gennerich, H., Peters, M., Wenzhöfer, F., Amann, R., & Meyerdierks, A. (2011) · Environmental Microbiology · doi:10.1111/j.1462-2920.2011.02530.x · Cited by 53
Mineralogy Drives Bacterial Biogeography of Hydrothermally Inactive Seafloor Sulfide Deposits
Toner, B. M., Lesniewski, R. A., Marlow, J. J., Briscoe, L. J., Santelli, C. M., Bach, W., Orcutt, B. N., & Edwards, K. J. (2013) · Geomicrobiology Journal · doi:10.1080/01490451.2012.688925 · Cited by 53
Zeta-ProteobacteriaDominate the Colonization and Formation of Microbial Mats in Low-Temperature Hydrothermal Vents at Loihi Seamount, Hawaii
Rassa, A. C., McAllister, S. M., Safran, S. A., & Moyer, C. L. (2009) · Geomicrobiology Journal · doi:10.1080/01490450903263350 · Cited by 53
Bacterial diversity in Fe‐rich hydrothermal sediments at two South Tonga Arc submarine volcanoes
Forget, N. L., Murdock, S. A., & Juniper, S. K. (2010) · Geobiology · doi:10.1111/j.1472-4669.2010.00247.x · Cited by 52
Microbial diversity in shallow‐water hydrothermal sediments of Kueishan Island, Taiwan as revealed by pyrosequencing
Wang, L., Cheung, M. K., Kwan, H. S., Hwang, J., & Wong, C. K. (2015) · Journal of Basic Microbiology · doi:10.1002/jobm.201400811 · Cited by 51
Heterotrophic Proteobacteria in the vicinity of diffuse hydrothermal venting
Meier, D. V., Bach, W., Girguis, P. R., Gruber‐Vodicka, H. R., Reeves, E. P., Richter, M., Vidoudez, C., Amann, R., & Meyerdierks, A. (2016) · Environmental Microbiology · doi:10.1111/1462-2920.13304 · Cited by 51
Molecular characterization of bacteria associated with the trophosome and the tube of Lamellibrachia sp., a siboglinid annelid from cold seeps in the eastern Mediterranean
Duperron, S., de Beer, D., Zbinden, M., Boëtius, A., Schipani, V., Kahil, N., & Gaill, F. (2009) · FEMS Microbiology Ecology · doi:10.1111/j.1574-6941.2009.00724.x · Cited by 50
Self-citation
Culture dependent and independent analyses of 16S rRNA and ATP citrate lyase genes: a comparison of microbial communities from different black smoker chimneys on the Mid-Atlantic Ridge
Voordeckers, J. W., My, H., Hügler, M., Ko, V., Sievert, S. M., & Vetriani, C. (2008) · Extremophiles · doi:10.1007/s00792-008-0167-5 · Cited by 50
Presence of Hydrogenophilus thermoluteolus DNA in accretion ice in the subglacial Lake Vostok, Antarctica, assessed using rrs , cbb and hox
Lavire, C., Normand, P., Alekhina, I. A., Bulat, S. A., Prieur, D., Birrien, J., Fournier, P., Hänni, C., & Petit, J. (2006) · Environmental Microbiology · doi:10.1111/j.1462-2920.2006.01087.x · Cited by 50
Pyrinomonas methylaliphatogenes gen. nov., sp. nov., a novel group 4 thermophilic member of the phylum Acidobacteria from geothermal soils
Crowe, M. A., Power, J. F., Morgan, X. C., Dunfield, P. F., Lagutin, K., Rijpstra, W. I. C., Vyssotski, M. V., Damsté, J. S. S., Houghton, K. M., Ryan, J. L. J., et al. (2013) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/ijs.0.055079-0 · Cited by 48
Biosignatures and Bacterial Diversity in Hydrothermal Deposits of Solfatara Crater, Italy
Glamoclija, M., Garrel, L., Berthon, J., & López‐García, P. (2004) · Geomicrobiology Journal · doi:10.1080/01490450490888235 · Cited by 48
Self-citation
Activity and abundance of denitrifying bacteria in the subsurface biosphere of diffuse hydrothermal vents of the Juan de Fuca Ridge
Bourbonnais, A., Juniper, S. K., Butterfield, D. A., Devol, A. H., Kuypers, M. M. M., Lavik, G., Hallam, S., Wenk, C. B., Chang, B. X., Murdock, S. A., et al. (2012) · Biogeosciences · doi:10.5194/bg-9-4661-2012 · Cited by 46
Strain-level genomic variation in natural populations of Lebetimonas from an erupting deep-sea volcano
Meyer, J. L., & Huber, J. A. (2013) · The ISME Journal · doi:10.1038/ismej.2013.206 · Cited by 44
Diversity of Prokaryotic Community at a Shallow Marine Hydrothermal Site Elucidated by Illumina Sequencing Technology
Lentini, V., Gugliandolo, C., Bunk, B., Overmann, J., & Maugeri, T. L. (2014) · Current Microbiology · doi:10.1007/s00284-014-0609-5 · Cited by 45
Colonization of Sulfurovum sp. on the gill surfaces of Alvinocaris longirostris, a deep‐sea hydrothermal vent shrimp
Tokuda, G., Yamada, A., Nakano, K., Arita, N. O., & Yamasaki, H. (2007) · Marine Ecology · doi:10.1111/j.1439-0485.2007.00211.x · Cited by 44
16S rRNA-based bacterial diversity in the organic-rich sediments underlying oxygen-deficient waters of the eastern Arabian Sea
Divya, B., Parvathi, A., Bharathi, P. A. L., & Nair, S. (2011) · World Journal of Microbiology and Biotechnology · doi:10.1007/s11274-011-0760-0 · Cited by 43
Biogeographic and Quantitative Analyses of Abundant Uncultivated γ-Proteobacterial Clades from Marine Sediment
Bowman, J. P., McCammon, S. A., & Dann, A. L. (2005) · Microbial Ecology · doi:10.1007/s00248-004-0070-2 · Cited by 43
Structures of bacterial communities on the surface of Ulva prolifera and in seawaters in an Ulva blooming region in Jiaozhou Bay, China
Liu, M., Dong, Y., Zhao, Y., Zhang, G., Zhang, W., & Xiao, T. (2010) · World Journal of Microbiology and Biotechnology · doi:10.1007/s11274-010-0627-9 · Cited by 43
Amphritea atlantica gen. nov., sp. nov., a gammaproteobacterium from the Logatchev hydrothermal vent field
Gärtner, A., Wiese, J., & Imhoff, J. F. (2008) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/ijs.0.65234-0 · Cited by 43
Epibiotic association between filamentous bacteria and the vent-associated galatheid crab,Shinkaia crosnieri(Decapoda: Anomura)
Tsuchida, S., Suzuki, Y., Fujiwara, Y., Kawato, M., Uematsu, K., Yamanaka, T., Mizota, C., & Yamamoto, H. (2010) · Journal of the Marine Biological Association of the United Kingdom · doi:10.1017/s0025315410001827 · Cited by 43
Microbial diversity of a sulfide black smoker in main endeavour hydrothermal vent field, Juan de Fuca Ridge
Zhou, H., Li, J., Peng, X., Meng, J., Wang, F., & Ai, Y. (2009) · The Journal of Microbiology · doi:10.1007/s12275-008-0311-z · Cited by 41
Genome Analysis of Deep-Sea Thermophilic Phage D6E
Wang, Y., & Zhang, X. (2010) · Applied and Environmental Microbiology · doi:10.1128/aem.01270-10 · Cited by 41
Ecological succession leads to chemosynthesis in mats colonizing wood in sea water
Kalenitchenko, D., Dupraz, M., Bris, N. L., Petetin, C., Rosé, C., West, N. J., & Galand, P. E. (2016) · The ISME Journal · doi:10.1038/ismej.2016.12 · Cited by 40
Microbial diversity in deep-sea sediments from the Menez Gwen hydrothermal vent system of the Mid-Atlantic Ridge
Cerqueira, T., Pinho, D., Egas, C., Froufe, H. J. C., Altermark, B., Candeias, C., Santos, R. S., & Bettencourt, R. (2015) · Marine Genomics · doi:10.1016/j.margen.2015.09.001 · Cited by 39
Microbial community structure and diversity in deep-sea hydrothermal vent sediments along the Eastern Lau Spreading Centre
Wei, M., Zhang, R., Wang, Y., Ji, H.-G., Zheng, J. M., Chen, X., & Zhou, H. (2013) · Acta Oceanologica Sinica · doi:10.1007/s13131-013-0276-6 · Cited by 39
Fungi associated with chimney and sulfide samples from a South Mid-Atlantic Ridge hydrothermal site: Distribution, diversity and abundance
Xu, W., Guo, S., Pang, K., & Luo, Z.-H. (2017) · Deep Sea Research Part I Oceanographic Research Papers · doi:10.1016/j.dsr.2017.03.004 · Cited by 39

Authors: López‐García, P., Duperron, S., Philippot, P., Foriel, J., Susini, J., & Moreira, D.
Affiliations: Université Paris-Sud (FR)
Centre National de la Recherche Scientifique (FR)
European Synchrotron Radiation Facility (FR)
ORCID: López‐García, Purificación
Duperron, Sébastien
Philippot, Pascal
Foriel, Julien
Susini, Jean
Moreira, David
Venue: Environmental Microbiology
Publisher: Wiley
Published: 2003-08-14
Volume: 5
Issue: 10
Pages: 961-976
ISSN: 1462-2912 (ISSN-L)
1462-2920
DOI: 10.1046/j.1462-2920.2003.00495.x
OpenAlex: W2139989406
Cited by: 221
References: 67
Citations by year: 2026: 3 · 2025: 2 · 2023: 7 · 2022: 9 · 2021: 2 · 2020: 6 · 2019: 8 · 2018: 13 · 2017: 8 · 2016: 7 · 2015: 10 · 2014: 17 · 2013: 15 · 2012: 10
FWCI: 10.82
Type: journal article
Language: en
Open access: bronze
doi.org
Licence: onlinelibrary.wiley.com/termsAndConditions#vor (vor)
Locations: Environmental Microbiology (publishedVersion)
PubMed (publishedVersion)
HAL (submittedVersion)
DIAL (Catholic University of Leuven) (submittedVersion)
Funders: European Synchrotron Radiation Facility
Centre National de la Recherche Scientifique
Topics: Physical Sciences › Environmental Science › Ecology › Microbial Community Ecology and Physiology
Physical Sciences › Environmental Science › Environmental Chemistry › Methane Hydrates and Related Phenomena
Physical Sciences › Earth and Planetary Sciences › Geochemistry and Petrology › Geochemistry and Elemental Analysis
Keywords: bacterial diversity, hydrothermal sediments, Epsilonproteobacteria, Mid-Atlantic Ridge, deep-sea hydrothermal vents, Gammaproteobacteria, Acidobacteria, sulfur reduction
MeSH terms: Atlantic Ocean, Hot Temperature, Iron, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S, Seawater, Spectrum Analysis, Genetic Variation, Water Microbiology, Likelihood Functions, Silicates, Geologic Sediments, Gammaproteobacteria, Epsilonproteobacteria

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review

Bacterial diversity in hydrothermal sediment and epsilonproteobacterial dominance in experimental microcolonizers at the Mid-Atlantic Ridge.

Abstract

Overview

Integrity signals

Verification

Claims the paper makes

Claims other papers make about this one

Self-check

Citations

Cites

Cited by

Related

Metadata

Record

About these checks