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Mathematically universal and biologically consistent astrocytoma genotype encodes for transformation and predicts survival phenotype

Aiello, K. A., Ponnapalli, S. P., & Alter, O. (2018) · APL Bioengineering · doi:10.1063/1.5037882 · Cited by 5

Retrospective clinical trial experimentally validates glioblastoma genome-wide pattern of DNA copy-number alterations predictor of survival

Ponnapalli, S. P., Bradley, M. W., Devine, K., Bowen, J., Coppens, S. E., Leraas, K., Milash, B. A., Li, F., Luo, H., Qiu, S., et al. (2020) · APL Bioengineering · doi:10.1063/1.5142559 · Cited by 5

Processing and Modeling Genome-Wide Expression Data Using Singular Value Decomposition

Alter, O., Brown, P. O., & Botstein, D. (2001)

Singular value decomposition for genome-wide expression data processing and modeling

Alter, O., Brown, P. O., & Botstein, D. (2000) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.97.18.10101 · Cited by 1,989

A Higher-Order Generalized Singular Value Decomposition for Comparison of Global mRNA Expression from Multiple Organisms

Ponnapalli, S. P., Saunders, M. A., Loan, C. F. V., & Alter, O. (2011) · PLoS ONE · doi:10.1371/journal.pone.0028072 · Cited by 102

SVD (singular value decomposition)

Yap, K. C., Acta Inc, Wathugala, G. W., Hasselman, T. K., Acta Inc, Keng, D., Yap, C., & Fidelity, H. H. (2008) · Springer eBooks · doi:10.1007/978-1-4020-6754-9_16446 · Cited by 2

Combining transcriptional datasets using the generalized singular value decomposition

SCHREIBER, A. W., Shirley, N. J., Burton, R. A., & Fincher, G. B. (2008) · BMC Bioinformatics · doi:10.1186/1471-2105-9-335 · Cited by 14