The DOI matches its Crossref record; 46 of the 46 references it cites were found in a registry or an index.
Gata2, Fli1, and Scl form a recursively wired gene-regulatory circuit during early hematopoietic development
Open accessAbstract
Conservation of the vertebrate body plan has been attributed to the evolutionary stability of gene-regulatory networks (GRNs). We describe a regulatory circuit made up of Gata2, Fli1, and Scl/Tal1 and their enhancers, Gata2-3 , Fli1 +12, and Scl +19, that operates during specification of hematopoiesis in the mouse embryo. We show that the Fli1 +12 enhancer, like the Gata2-3 and Scl +19 enhancers, targets hematopoietic stem cells (HSCs) and relies on a combination of Ets, Gata, and E-Box motifs. We show that the Gata2-3 enhancer also uses a similar cluster of motifs and that Gata2, Fli1, and Scl are expressed in embryonic day-11.5 dorsal aorta where HSCs originate and in fetal liver where they multiply. The three HSC enhancers in these tissues and in ES cell-derived hemangioblast equivalents are bound by each of these transcription factors (TFs) and form a fully connected triad that constitutes a previously undescribed example of both this network motif in mammalian development and a GRN kernel operating during the specification of a mammalian stem cell.
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“A recursively wired triple feedback circuit has been proposed as a kernel underlying the pluripotential state of endothelial/hematopoietic precursors that arise in vertebrate development (Pimanda et al., 2007).”
From Evolution of Gene Regulatory Networks Controlling Body Plan Development (2011) · cites this paper as Pimanda et al., 2007
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“This sub-circuit consists of three positively active genes. There are no cross-regulating repressors in this sub-circuit, and the three genes are linked by multiple positive auto- and cross-regulatory linkages.”
From Emerging properties of animal gene regulatory networks (2010) · cites this paper as [28]
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Core Transcriptional Regulatory Circuitry in Human Embryonic Stem Cells
Boyer, L. A., Lee, T. I., Cole, M. F., Johnstone, S. E., Levine, S. S., Zucker, J. P., Guenther, M. G., Kumar, R. M., Murray, H. L., Jenner, R. G., et al. (2005) · Cell · doi:10.1016/j.cell.2005.08.020 · Cited by 4,505
An Introduction to Systems Biology: Design Principles of Biological Circuits
Alon, U. (2006) · doi:10.1201/9781420011432 · Cited by 2,825
Okuda, T., van Deursen, J., Hiebert, S. W., Grosveld, G., & Downing, J. R. (1996) · Cell · doi:10.1016/s0092-8674(00)80986-1 · Cited by 1,856
Weissman, I. L. (2000) · Cell · doi:10.1016/s0092-8674(00)81692-x · Cited by 1,827
A common precursor for hematopoietic and endothelial cells
Choi, K., Kennedy, M., Kazarov, A. R., Papadimitriou, J. C., & Keller, G. M. (1998) · Development · doi:10.1242/dev.125.4.725 · Cited by 1,435
An early haematopoietic defect in mice lacking the transcription factor GATA-2
Tsai, F., Keller, G. M., Kuo, F. C., Weiss, M. J., Chen, J., Rosenblatt, M., Alt, F. W., & Orkin, S. H. (1994) · Nature · doi:10.1038/371221a0 · Cited by 1,419
Transcription regulation and animal diversity
Levine, M., & Tjian, R. (2003) · Nature · doi:10.1038/nature01763 · Cited by 1,309
Gene Regulatory Networks and the Evolution of Animal Body Plans
Davidson, E. H., & Erwin, D. H. (2006) · Science · doi:10.1126/science.1113832 · Cited by 1,207
Wang, Q., Stacy, T., Binder, M., Marin-Padilla, M., Sharpe, A. H., & Speck, N. A. (1996) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.93.8.3444 · Cited by 1,178
An Introduction to Systems Biology: Design Principles of Biological Circuits
Alon, U. (2019) · doi:10.1201/9780429283321 · Cited by 955
Lawson, N. D., Vogel, A. M., & Weinstein, B. M. (2002) · Developmental Cell · doi:10.1016/s1534-5807(02)00198-3 · Cited by 813
Gene regulatory networks for development
Levine, M., & Davidson, E. H. (2005) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0408031102 · Cited by 796
The T Cell Leukemia Oncoprotein SCL/tal-1 Is Essential for Development of All Hematopoietic Lineages
Porcher, C., Swat, W., Rockwell, K. R., Fujiwara, Y., Alt, F. W., & Orkin, S. H. (1996) · Cell · doi:10.1016/s0092-8674(00)80076-8 · Cited by 731
The timing of eukaryotic evolution: Does a relaxed molecular clock reconcile proteins and fossils?
Douzery, E. J. P., Snell, E. A., Bapteste, E., Delsuc, F., & Philippe, H. (2004) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0403984101 · Cited by 638
Intraaortic hemopoietic cells are derived from endothelial cells during ontogeny
Jaffredo, T., Gautier, R., Eichmann, A., & Dieterlen‐Lièvre, F. (1998) · Development · doi:10.1242/dev.125.22.4575 · Cited by 599
Fehling, H. J., Lacaud, G., Kubo, A., Kennedy, M., Robertson, S. M., Keller, G. M., & Kouskoff, V. (2003) · Development · doi:10.1242/dev.00589 · Cited by 506
Self-citationNotch1 but Not Notch2 Is Essential for Generating Hematopoietic Stem Cells from Endothelial Cells
Kumano, K., Chiba, S., Kunisato, A., Sata, M., Saito, T., Nakagami‐Yamaguchi, E., Yamaguchi, T., Masuda, S., Shimizu, K., Takahashi, T., et al. (2003) · Immunity · doi:10.1016/s1074-7613(03)00117-1 · Cited by 466
The Murine Placenta Contains Hematopoietic Stem Cells within the Vascular Labyrinth Region
Ottersbach, K., & Dzierzak, E. A. (2005) · Developmental Cell · doi:10.1016/j.devcel.2005.02.001 · Cited by 446
Self-citationThe SCL gene specifies haemangioblast development from early mesoderm
Gering, M., Rodaway, A., Göttgens, B., Patient, R. K., & Green, A. R. (1998) · The EMBO Journal · doi:10.1093/emboj/17.14.4029 · Cited by 421
Self-citationGrass, J. A., Boyer, M. E., Pal, S. K., Wu, J., Weiss, M. J., & Bresnick, E. H. (2003) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1432147100 · Cited by 373
A directed screen for genes involved in Drosophila blood cell activation
Zettervall, C.-J., Ines, A., Williams, M. J., Palmer, R. H., Kurucz, É., Andó, I., & Hultmark, D. (2004) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0403789101 · Cited by 366
Robb, L. G., Elwood, N. J., Elefanty, A. G., Köntgen, F., Li, R., Barnett, L. D., & Begley, C. G. (1996) · The EMBO Journal · doi:10.1002/j.1460-2075.1996.tb00787.x · Cited by 338
Hedgehog Signaling Is Required for Adult Blood Stem Cell Formation in Zebrafish Embryos
Gering, M., & Patient, R. K. (2005) · Developmental Cell · doi:10.1016/j.devcel.2005.01.010 · Cited by 330
Control of Cardiac Development by an Evolutionarily Conserved Transcriptional Network
Cripps, R. M., & Olson, E. N. (2002) · Developmental Biology · doi:10.1006/dbio.2002.0666 · Cited by 330
Robert‐Moreno, A., Espinosa, L., de la Pompa, J. L., & Bigas, A. (2005) · Development · doi:10.1242/dev.01660 · Cited by 278
Developmental gene regulatory network architecture across 500 million years of echinoderm evolution
Hinman, V. F., Nguyen, A. T., Cameron, R. A., & Davidson, E. H. (2003) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2235868100 · Cited by 272
Yilmaz, Ö. H., Kiel, M. J., & Morrison, S. J. (2005) · Blood · doi:10.1182/blood-2005-05-2140 · Cited by 266
Distinct Origins of Adult and Embryonic Blood in Xenopus
Ciau‐Uitz, A., Walmsley, M. E., & Patient, R. K. (2000) · Cell · doi:10.1016/s0092-8674(00)00067-2 · Cited by 227
Mandal, L., Banerjee, U. K., & Hartenstein, V. (2004) · Nature Genetics · doi:10.1038/ng1404 · Cited by 214
Göttgens, B., Nastos, A., Kinston, S., Piltz, S., Delabesse, E. C. M., Stanley, M., Sanchez, M., Ciau‐Uitz, A., Patient, R., & Green, A. R. (2002) · The EMBO Journal · doi:10.1093/emboj/cdf286 · Cited by 212
Self-citationEnver, T., & Greaves, M. F. (1998) · Cell · doi:10.1016/s0092-8674(00)81215-5 · Cited by 188
Ono, Y., Fukuhara, N., & Yoshie, O. (1998) · Molecular and Cellular Biology · doi:10.1128/mcb.18.12.6939 · Cited by 142
Sánchez, M. J., Göttgens, B., Sinclair, A. M., Stanley, M. L., Begley, C. G., Hunter, S., & Green, A. R. (1999) · Development · doi:10.1242/dev.126.17.3891 · Cited by 135
Self-citationVyas, P., McDevitt, M. A., Cantor, A. B., Katz, S. G., Fujiwara, Y., & Orkin, S. H. (1999) · Development · doi:10.1242/dev.126.12.2799 · Cited by 132
The SCL transcriptional network and BMP signaling pathway interact to regulate RUNX1 activity
Pimanda, J. E., Donaldson, I. J., Bruijn, M. F. T. R. D., Kinston, S., Knezevic, K., Huckle, L., Piltz, S., Landry, J., Green, A. R., Tannahill, D., et al. (2007) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0607196104 · Cited by 123
Self-citationWalmsley, M. E., Ciau‐Uitz, A., & Patient, R. K. (2002) · Development · doi:10.1242/dev.00169 · Cited by 122
Sinclair, A. M., Göttgens, B., Barton, L. M., Stanley, M. L., Pardanaud, L., Klaine, M., Gering, M., Bahn, S., Sánchez, M. J., Bench, A. J., et al. (1999) · Developmental Biology · doi:10.1006/dbio.1999.9236 · Cited by 105
Self-citationAGata2intronic enhancer confers its pan-endothelia-specific regulation
Khandekar, M. J., Brandt, W. D., Zhou, Y., Dagenais, S. L., Glover, T. W., Suzuki, N., Shimizu, R., Yamamoto, M. P., Lim, K.-C., & Engel, J. D. (2007) · Development · doi:10.1242/dev.001297 · Cited by 92
Chan, W. Y. I., Follows, G., Lacaud, G., Pimanda, J. E., Landry, J., Kinston, S., Knezevic, K., Piltz, S., Donaldson, I. J., Gambardella, L., et al. (2006) · Blood · doi:10.1182/blood-2006-05-023226 · Cited by 84
Self-citationDonaldson, I. J., Chapman, M., Kinston, S., Landry, J., Knezevic, K., Piltz, S., Buckley, N. J., Green, A. R., & Göttgens, B. (2005) · Human Molecular Genetics · doi:10.1093/hmg/ddi056 · Cited by 79
Self-citationSánchez, M. J., Bockamp, E., Miller, J., Gambardella, L., & Green, A. R. (2001) · Development · doi:10.1242/dev.128.23.4815 · Cited by 77
Self-citationGATA Motifs Regulate Early Hematopoietic Lineage-Specific Expression of the Gata2 Gene
Kobayashi‐Osaki, M., Ohneda, O., Suzuki, N., Minegishi, N., Yokomizo, T., Takahashi, S., Lim, K.-C., Engel, J. D., & Yamamoto, M. P. (2005) · Molecular and Cellular Biology · doi:10.1128/mcb.25.16.7005-7020.2005 · Cited by 75
The emergence of definitive hematopoietic stem cells in the mammal
Dzierzak, E. A. (2005) · Current Opinion in Hematology · doi:10.1097/01.moh.0000160736.44726.0e · Cited by 59
Context-dependent GATA Factor Function
Wozniak, R. J., Boyer, M. E., Grass, J. A., Lee, Y., & Bresnick, E. H. (2007) · Journal of Biological Chemistry · doi:10.1074/jbc.m700792200 · Cited by 57
An Oct-1 binding site mediates activation of the gata2 promoter by BMP signaling
Oren, T. (2005) · Nucleic Acids Research · doi:10.1093/nar/gki746 · Cited by 29
Two new Drosophila genes related to human hematopoietic and neurogenic transcription factors.
Varterasian, M. L., Lipkowitz, S., Karsch‐Mizrachi, I., Paterson, B. M., & Kirsch, I. R. (1993) · PubMed · Cited by 12
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Research works printed but not linked: 1
- M Varterasian, S Lipkowitz, I Karsch-Mizrachi, B Paterson, I Kirsch Cell Growth Differ 4, 885–889 (1993).
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Laurenti, E., & Göttgens, B. (2018) · Nature · doi:10.1038/nature25022 · Cited by 929
Self-citationWilson, N. K., Foster, S. D., Wang, X., Knezevic, K., Schütte, J., Kaimakis, P., Chilarska, P. M., Kinston, S., Ouwehand, W. H., Dzierzak, E., et al. (2010) · Cell stem cell · doi:10.1016/j.stem.2010.07.016 · Cited by 728
Self-citationEmerging properties of animal gene regulatory networks
Davidson, E. H. (2010) · Nature · doi:10.1038/nature09645 · Cited by 579
Evolution of Gene Regulatory Networks Controlling Body Plan Development
Peter, I. S., & Davidson, E. H. (2011) · Cell · doi:10.1016/j.cell.2011.02.017 · Cited by 417
Moignard, V., Woodhouse, S., Haghverdi, L., Lilly, A. J., Tanaka, Y., Wilkinson, A. C., Buettner, F., Macaulay, I. C., Jawaid, W., Diamanti, E., et al. (2015) · Nature Biotechnology · doi:10.1038/nbt.3154 · Cited by 380
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Metadata
- Authors
- Pimanda, J. E., Ottersbach, K., Knezevic, K., Kinston, S., Chan, W. Y. I., Wilson, N. K., Landry, J.-R., Wood, A. D., Kolb-Kokocinski, A., Green, A. R., Tannahill, D., Lacaud, G., Kouskoff, V., & Göttgens, B.
- Affiliations
- University of Cambridge (GB)
- The Wellcome Trust Sanger Institute, Cambridge CB10 1SA, United Kingdom; and
- Wellcome Sanger Institute (GB)
- Cancer Research UK Manchester Institute (GB)
- Paterson Institute for Cancer Research, Manchester M20 4BX, United Kingdom
- ORCID
- Venue
- Proceedings of the National Academy of Sciences
- Publisher
- National Academy of Sciences
- Published
- 2007-11-06
- Volume
- 104
- Issue
- 45
- Pages
- 17692-17697
- ISSN
- 0027-8424 (ISSN-L)
- 1091-6490
- PMC
- PMC2077040
- OpenAlex
- W1996351707
- Cited by
- 228
- References
- 46
- Citations by year
- 2026: 5 · 2025: 4 · 2024: 3 · 2023: 11 · 2022: 6 · 2021: 6 · 2020: 7 · 2019: 6 · 2018: 9 · 2017: 8 · 2016: 19 · 2015: 16 · 2014: 17 · 2013: 22 · 2012: 18
- FWCI
- 10.65
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Proceedings of the National Academy of Sciences (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Research Explorer (The University of Manchester) (submittedVersion)
- Funders
- Wellcome Trust
- Kay Kendall Leukaemia Fund
- University of Oxford
- Directorate for Biological Sciences
- Medical Research Council
- Biotechnology and Biological Sciences Research Council
- National Health and Medical Research Council
- Topics
- Health Sciences › Medicine › Hematology › Hematopoietic Stem Cell Transplantation
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Chromatin Dynamics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Developmental Biology and Gene Regulation
- Keywords
- GATA2, FLI1, SCL/TAL1, gene regulatory networks, hematopoietic stem cells, enhancers, transcription factor binding motifs, E-box motifs, dorsal aorta, fetal liver, hemangioblasts, embryonic stem cells, hematopoietic specification, network motifs
- MeSH terms
- T-Cell Acute Lymphocytic Leukemia Protein 1, Animals, Binding Sites, Blood Vessels, Embryo, Mammalian, Enhancer Elements, Genetic, Gene Expression Regulation, Hematopoiesis, Hematopoietic Stem Cells, Proto-Oncogene Proteins, GATA2 Transcription Factor, Mice, Proto-Oncogene Protein c-fli-1, Basic Helix-Loop-Helix Proteins
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