Mammalian mitochondria have the innate ability to import tRNAs by a mechanism distinct from protein import
Open accessAbstract
Mitochondrial genomes generally encode a minimal set of tRNAs necessary for protein synthesis. However, a number of eukaryotes import tRNAs from the cytoplasm into their mitochondria. For instance, Saccharomyces cerevisiae imports cytoplasmic tRNA(Gln) into the mitochondrion without any added protein factors. Here, we examine the existence of a similar active tRNA import system in mammalian mitochondria. We have used subcellular RNA fractions from rat liver and human cells to perform RT-PCR with oligonucleotide primers specific for nucleus-encoded tRNA(CUG)(Gln) and tRNA(UUG)(Gln) species, and we show that these tRNAs are present in rat and human mitochondria in vivo. Import of in vitro transcribed tRNAs, but not of heterologous RNAs, into isolated mitochondria also demonstrates that this process is tRNA-specific and does not require the addition of cytosolic factors. Although this in vitro system requires ATP, it is resistant to inhibitors of the mitochondrial electrochemical gradient, a key component of protein import. tRNA(Gln) import into mammalian mitochondria proceeds by a mechanism distinct from protein import. We also show that both tRNA(Gln) species and a bacterial pre-tRNA(Asp) can be imported in vitro into mitochondria isolated from myoclonic epilepsy with ragged-red fiber cells if provided with sufficient ATP (2 mM). This work suggests that tRNA import is more widespread than previously thought and may be a universal trait of mitochondria. Mutations in mitochondrial tRNA genes have been associated with human disease; the tRNA import system described here could possibly be exploited for the manipulation of defective mitochondria.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Rubio et al. demonstrated import of cytosolic tRNA Gln(CUG) and tRNA Gln(UUG) in rat and human mitochondria in vivo by a mechanism distinct from protein import.
“Recently, Rubio et al. [243] have demonstrated the import of cytosolic tRNA Gln(CUG) and tRNA Gln(UUG) in rat and human mitochondria in vivo, by a mechanism distinct from that of protein import.”
From Mitochondrial DNA mutations and human disease (2010) · cites this paper as [243]
Cites
Single-Step Method of RNA Isolation by Acid Guanidinium Thiocyanate–Phenol–Chloroform Extraction
Chomczynski, P., & Sacchi, N. (1987) · Analytical Biochemistry · doi:10.1006/abio.1987.9999 · Cited by 65,240 · see citing works
Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction
Chomczyński, P., & Sacchi, N. (1987) · Analytical Biochemistry · doi:10.1016/0003-2697(87)90021-2 · Cited by 47,092 · see citing works
Compilation of tRNA sequences and sequences of tRNA genes
Sprinzl, M. (2004) · Nucleic Acids Research · doi:10.1093/nar/gki012 · Cited by 1,916 · see citing works
Translocation of Proteins into Mitochondria
Neupert, W., & Herrmann, J. M. (2007) · Annual Review of Biochemistry · doi:10.1146/annurev.biochem.76.052705.163409 · Cited by 1,486 · see citing works
tRNA’s Wobble Decoding of the Genome: 40 Years of Modification
Agris, P. F., Vendeix, F. A. P., & Graham, W. D. (2006) · Journal of Molecular Biology · doi:10.1016/j.jmb.2006.11.046 · Cited by 543 · see citing works
[59] Inhibitors of the ATP synthetase systems
Linnett, P. E., & BEECHEY, R. B. (1979) · Methods in enzymology on CD-ROM/Methods in enzymology · doi:10.1016/0076-6879(79)55061-7 · Cited by 256 · see citing works
Human mitochondrial tRNAs in health and disease
Florentz, C., Sohm, B., Tóth, P., P�tz, J., & Sissler, M. (2003) · Cellular and Molecular Life Sciences · doi:10.1007/s00018-003-2343-1 · Cited by 249 · see citing works
Heckman, J. E., Sarnoff, J., Alzner-Deweerd, B., Yin, S., & RajBhandary, U. L. (1980) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.77.6.3159 · Cited by 246 · see citing works
Isolation and Subfractionation of Mitochondria from Animal Cells and Tissue Culture Lines
Pallotti, F., & Lenaz, G. (2007) · Methods in cell biology · doi:10.1016/s0091-679x(06)80001-4 · Cited by 232 · see citing works
From one amino acid to another: tRNA-dependent amino acid biosynthesis
Sheppard, K., Yuan, J., Hohn, M. J., Jester, B. C., Devine, K. M., & Söll, D. G. (2008) · Nucleic Acids Research · doi:10.1093/nar/gkn015 · Cited by 177 · see citing works
Self-citationEntelis, N., Brandina, I., Kamenski, P. A., Krasheninnikov, I. A., Martin, R. P., & Tarassov, I. (2006) · Genes & Development · doi:10.1101/gad.385706 · Cited by 162 · see citing works
Molecular biology and energetics of membrane transport
Kaback, H. R. (1976) · Journal of Cellular Physiology · doi:10.1002/jcp.1040890414 · Cited by 161 · see citing works
Kolesnikova, O. A., Entelis, N. S., Jacquin-Becker, C., Goltzene, F., Chrzanowska-Lightowlers, Z. M., Lightowlers, R. N., Martin, R. P., & Tarassov, I. (2004) · Human Molecular Genetics · doi:10.1093/hmg/ddh267 · Cited by 157 · see citing works
Mitochondrial tRNA import: are there distinct mechanisms?
Schneider, A., & Maréchal-Drouard, L. (2000) · Trends in Cell Biology · doi:10.1016/s0962-8924(00)01854-7 · Cited by 155 · see citing works
Suppression of mutations in mitochondrial DNA by tRNAs imported from the cytoplasm.
Kolesnikova, O., Entelis, N., Mireau, H., Fox, T. D., Martin, R., & Tarassov, I. (2000) · Science · doi:10.1126/science.289.5486.1931 · Cited by 152 · see citing works
Human Mitochondrial tRNA Processing
Rossmanith, W., Tullo, A., Potuschak, T., Karwan, R. M., & Sbis, E. (1995) · Journal of Biological Chemistry · doi:10.1074/jbc.270.21.12885 · Cited by 151 · see citing works
Alfonzo, J. D., Blanc, V., Estévez, A. M., Rubio, M. A. T., & Simpson, L. (1999) · The EMBO Journal · doi:10.1093/emboj/18.24.7056 · Cited by 150 · see citing works
Self-citationTarassov, I., Entelis, N., & Martin, R. (1995) · EMBO Journal · doi:10.1002/j.1460-2075.1995.tb07352.x · Cited by 146 · see citing works
Martin, R. P., Schneller, J., Stahl, A., & Dirheimer, G. (1979) · Biochemistry · doi:10.1021/bi00588a021 · Cited by 144 · see citing works
Transformation of isolated mammalian mitochondria by bacterial conjugation
Yoon, Y. G. (2005) · Nucleic Acids Research · doi:10.1093/nar/gni140 · Cited by 141 · see citing works
Saccharomyces cerevisiae imports the cytosolic pathway for Gln‐tRNA synthesis into the mitochondrionPreprint
Krett, B., Rinehart, J., Rubio, M. A. T., Alfonzo, J. D., & Söll, D. (2005) · Genes & Development · doi:10.1101/gad.1269305 · Cited by 114 · see citing works
Self-citationCunarro, J. A., & Weiner, M. W. (1975) · Biochimica et Biophysica Acta (BBA) - Bioenergetics · doi:10.1016/0005-2728(75)90106-1 · Cited by 108 · see citing works
Functional Delivery of a Cytosolic tRNA into Mutant Mitochondria of Human Cells
Mahata, B., Mukherjee, S., Mishra, S., Bandyopadhyay, A., & Adhya, S. (2006) · Science · doi:10.1126/science.1129754 · Cited by 99 · see citing works
The Origins of Mitochondrial Ribonucleic Acids in Tetrahymena pyriformis*
Suyama, Y. (1967) · Biochemistry · doi:10.1021/bi00861a025 · Cited by 98 · see citing works
Chapter 1 Isolation and subfractionation of mitochondria from animal cells and tissue culture lines
Pallotti, F., & Lenaz, G. (2001) · Methods in cell biology · doi:10.1016/s0091-679x(01)65002-7 · Cited by 96 · see citing works
Evidence for an adaptation mechanism of mitochondrial translation via tRNA import from the cytosol.
Kamenski, P., Kolesnikova, O., Jubenot, V., Entelis, N., Krasheninnikov, I., Martin, R., & Tarassov, I. (2007) · Molecules and Cells · doi:10.1016/j.molcel.2007.04.019 · Cited by 91 · see citing works
Suzuki, H., Okazawa, Y., Komiya, T., et al. (2000) · Journal of Biological Chemistry · doi:10.1074/jbc.m006558200 · Cited by 81 · see citing works
In Vitro Import of a Nuclearly Encoded tRNA into Mitochondria of Solanum tuberosum
Delage, L., Dietrich, A., Cosset, A., et al. (2003) · Molecular and Cellular Biology · doi:10.1128/mcb.23.11.4000-4012.2003 · Cited by 61 · see citing works
Mechanisms of tRNA import into yeast mitochondria: An overview
Tarassov, I., & Martin, R. P. (1996) · Biochimie · doi:10.1016/0300-9084(96)84756-0 · Cited by 56 · see citing works
Import of Nuclear DNA-Encoded RNAs into Mitochondria and Mitochondrial Translation
Tarassov, I., Kamenski, P., Kolesnikova, O., Karicheva, O., Martin, R., Krasheninnikov, I., & Entelis, N. (2007) · Cell Cycle · doi:10.4161/cc.6.20.4783 · Cited by 55 · see citing works
Import of small RNAs intoLeishmaniamitochondriain vitro
Mahapatra, S., Ghosh, T., & Adhya, S. (1994) · Nucleic Acids Research · doi:10.1093/nar/22.16.3381 · Cited by 54 · see citing works
Selective importation of RNA into isolated mitochondria from Leishmania tarentolae
Rubio, M. A. T., Liu, X., Yuzawa, H., et al. (2000) · RNA · doi:10.1017/s1355838200991519 · Cited by 49 · see citing works
Self-citationIn Vitro Import of a Nuclearly Encoded tRNA into the Mitochondrion of Trypanosoma brucei
Yermovsky-Kammerer, A. E., & Hajduk, S. L. (1999) · Molecular and Cellular Biology · doi:10.1128/mcb.19.9.6253 · Cited by 48 · see citing works
End Processing Precedes Mitochondrial Importation and Editing of tRNAs in Leishmania tarentolae
KAPUSHOC, S. T., Alfonzo, J. D., Rubio, M. A. T., et al. (2000) · Journal of Biological Chemistry · doi:10.1074/jbc.m007838200 · Cited by 35 · see citing works
Self-citationDifferential import of nuclear-encoded tRNAGly isoacceptors into Solanum tuberosum mitochondria
Brubacher-Kauffmann, S., Maréchal‐Drouard, L., Cosset, A., et al. (1999) · Nucleic Acids Research · doi:10.1093/nar/27.9.2037 · Cited by 33 · see citing works
How do mammalian mitochondria synthesize proteins?
Rorbach, J., Soleimanpour‐Lichaei, H. R., Lightowlers, R. N., & Chrzanowska‐Lightowlers, Z. M. (2007) · Biochemical Society Transactions · doi:10.1042/bst0351290 · Cited by 24 · see citing works
The ins and outs of tRNA transport
Mirande, M. (2007) · EMBO Reports · doi:10.1038/sj.embor.7400989 · Cited by 15 · see citing works
Schneider, A. (2001) · Trends in Genetics · doi:10.1016/s0168-9525(01)02439-8 · Cited by 14 · see citing works
Flagged first, then by citations
Cited by
Sorted by citations
The Human Mitochondrial Transcriptome
Mercer, T. R., Neph, S., Dinger, M. E., Crawford, J., Smith, M. A., Shearwood, A.-M. J., Haugen, E., Bracken, C. P., Rackham, O., Stamatoyannopoulos, J. A., et al. (2011) · Cell · doi:10.1016/j.cell.2011.06.051 · Cited by 905 · see citing works
Mitochondrial DNA mutations and human disease
Tuppen, H. A. L., Blakely, E. L., Turnbull, D. M., & Taylor, R. W. (2010) · Biochimica et Biophysica Acta (BBA) - Bioenergetics · doi:10.1016/j.bbabio.2009.09.005 · Cited by 676 · see citing works
“[243] have demonstrated the import of cytosolic tRNA and tRNA in rat and humanmitochondria in vivo, by a mechanism distinct from that of protein import.”
BackgroundMitochondrial localization, import, and mitochondrial function of the androgen receptor
Bajpai, P., Koc, E., Sonpavde, G., Singh, R., & Singh, K. K. (2019) · Journal of Biological Chemistry · doi:10.1074/jbc.ra118.006727 · Cited by 99 · see citing works
PNPASE and RNA trafficking into mitochondria
Wang, G., Shimada, E., Koehler, C. M., & Teitell, M. A. (2012) · Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms · doi:10.1016/j.bbagrm.2011.10.001 · Cited by 84 · see citing works
“Both tRNACUGGln and tRNAUUGGln were also identified in mitochondria isolated from human and rat liver using sub-cellular fractionation and RT-PCR [62], providing in vivo relevance.”
BackgroundMethodInfluential
- Authors
- Rubio, M. A. T., Rinehart, J. J., Krett, B., Duvezin-Caubet, S., Reichert, A. S., Söll, D., & Alfonzo, J. D.
- Affiliations
- Yale University (US)
- The Ohio State University (US)
- Institute for Physiological Chemistry, Ludwig-Maximilians-University, Butenandtstrasse 5, 81377 Munich, Germany
- Venue
- Proceedings of the National Academy of Sciences
- Publisher
- National Academy of Sciences
- Published
- 2008-07-08
- Volume
- 105
- Issue
- 27
- Pages
- 9186-9191
- ISSN
- 0027-8424 (ISSN-L)
- 1091-6490
- PMC
- PMC2453747
- OpenAlex
- W2148427863
- Cited by
- 154
- References
- 38
- Citations by year
- 2026: 2 · 2025: 4 · 2024: 11 · 2023: 8 · 2022: 7 · 2021: 5 · 2020: 11 · 2019: 11 · 2018: 5 · 2017: 9 · 2016: 7 · 2015: 12 · 2014: 4 · 2013: 7 · 2012: 14
- FWCI
- 4.94
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Proceedings of the National Academy of Sciences (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Funders
- National Science Foundation
- Deutsche Forschungsgemeinschaft (SFB 594)
- National Institute of General Medical Sciences (R01GM084065)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA and protein synthesis mechanisms
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Mitochondrial Function and Pathology
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Nuclear Structure and Function
- Keywords
- tRNA import, mitochondrial tRNA, mammalian mitochondria, mitochondrial protein import, glutamine tRNA, mitochondrial genome, mitochondrial membrane potential, myoclonic epilepsy with ragged-red fibers, mitochondrial disease, pre-tRNA
- MeSH terms
- Adenosine Triphosphate, Animals, Base Sequence, Cell Nucleus, Cytosol, HeLa Cells, Humans, Mammals, Mitochondria, Mitochondria, Liver, Molecular Sequence Data, Nucleic Acid Conformation, RNA, Transfer, Gln, Solubility, MERRF Syndrome, Protein Transport, RNA Transport, Rats
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review