Mitochondrial DNA mutations and human disease
Open accessAbstract
Mitochondrial disorders are a group of clinically heterogeneous diseases, commonly defined by a lack of cellular energy due to oxidative phosphorylation (OXPHOS) defects. Since the identification of the first human pathological mitochondrial DNA (mtDNA) mutations in 1988, significant efforts have been spent in cataloguing the vast array of causative genetic defects of these disorders. Currently, more than 250 pathogenic mtDNA mutations have been identified. An ever-increasing number of nuclear DNA mutations are also being reported as the majority of proteins involved in mitochondrial metabolism and maintenance are nuclear-encoded. Understanding the phenotypic diversity and elucidating the molecular mechanisms at the basis of these diseases has however proved challenging. Progress has been hampered by the peculiar features of mitochondrial genetics, an inability to manipulate the mitochondrial genome, and difficulties in obtaining suitable models of disease. In this review, we will first outline the unique features of mitochondrial genetics before detailing the diseases and their genetic causes, focusing specifically on primary mtDNA genetic defects. The functional consequences of mtDNA mutations that have been characterised to date will also be discussed, along with current and potential future diagnostic and therapeutic advances.
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TL;DR
This review summarizes mitochondrial DNA (mtDNA) genetics, the clinical syndromes caused by primary mtDNA mutations, diagnostic approaches, experimental models, and therapeutic/prevention strategies. It emphasizes that more than 250 pathogenic mtDNA mutations are known, but heteroplasmy, threshold effects, genotype–phenotype heterogeneity, and limited disease models continue to complicate understanding and treatment.
Key findings
- Since the first pathogenic mtDNA mutations were identified in 1988, over 250 pathogenic mtDNA mutations have been characterized; the mtDNA mutation rate is 10- to 17-fold higher than nuclear DNA. Prevalence estimates from North East England suggest 1 in 10,000 people have clinically manifesting mtDNA disease and a further 1 in 6000 are at risk; mutation frequencies include 0.14% for m.3243A>G and ∼0.2% for m.1555A>G.
- Mitochondrial genetics is shaped by maternal inheritance, heteroplasmy/homoplasmy, a threshold effect typically around 60%–90% mutant mtDNA, mitotic segregation, clonal expansion, and a developmental bottleneck. Phenotype depends on mutation load and tissue, not simply on mutation size or location.
- Common syndromes and mutations include MELAS (over 80% have m.3243A>G), LHON (three primary mutations account for at least 95% of cases; 50% of males versus 10% of females develop visual loss; recovery is 71% with m.14484T>C versus 25% with m.11778G>A), NARP/MILS (m.8993T>G; mutant load greater than 95% associates with childhood MILS), MERRF (m.8344A>G), KSS/Pearson syndrome (single large-scale deletions), and CPEO.
- Diagnosis uses histochemistry (ragged red fibres, COX-deficient fibres), biochemical respiratory chain assays, and molecular testing (RFLP, long-range PCR, sequencing, microarrays). No effective treatment is currently available; exercise and gene therapy approaches are under investigation, and prevention strategies include prenatal diagnosis, preimplantation genetic diagnosis, pronuclear transfer, and spindle-chromosome transfer.
Methods
- Narrative review; no primary data, systematic search strategy, or formal inclusion criteria are described. The evidence base is published literature on mtDNA genetics, clinical syndromes, diagnosis, functional characterization, and management.
- The review synthesizes cited studies and databases, including MITOMAP, and discusses experimental models such as transmitochondrial cybrids, yeast models, and mouse models, as well as transcriptomic and proteomic investigations.
- Main analysis is qualitative synthesis, with figures for genotype–phenotype correlations and criteria for assigning pathogenicity to novel mtDNA variants.
Limitations
- The paper states that progress has been hampered by the peculiar features of mitochondrial genetics, an inability to manipulate the mitochondrial genome, and difficulties in obtaining suitable models of disease; it also notes that no effective therapies or cures are presently available and that exact prevalence is difficult to ascertain.
- The text makes evident that this is a narrative review without systematic search or primary data, and that several areas remain debated or uncertain, including the exact mechanism of mtDNA replication, the mtDNA bottleneck, and the mechanism of mtDNA deletion formation.
- Model-specific limitations are stated: cybrids often use aneuploid tumour cells and glycolytic host cells, and cybridization can alter the transcriptome; yeast are inherently homoplasmic and S. cerevisiae lack complex I; mouse mtDNA cannot be directly manipulated, requiring indirect approaches.
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- Premisecitation
mtDNA repair systems exist.
“Although mtDNA repair systems do exist [51,52]”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites [51] Dianov, 2001, Base excision repair in nuclear and mitochondrial DNA, Prog. Nucleic Acid Res. Mol. Biol. source
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- cites [52] de Souza-Pinto, 2009, Novel DNA mismatch-repair activity involving YB-1 in human mitochondria, DNA. Repair. (Amst) source
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- Premisereasoning
The mitochondrial genome has a very high mutation rate, 10- to 17-fold higher than that observed in nuclear DNA.
“The mitochondrial genome has a very high mutation rate, 10-to 17-fold higher than that observed in nuclear DNA.”
Quote in the paperNot a substantial claim - Premisecitation
The occurrence of multiple mtDNA deletions of varying lengths in affected tissues may be due to inherited mutations in nuclear genes involved in mtDNA maintenance and replication (e.g., POLG and PEO1) and mitochondrial nucleotide metabolism (e.g., SLC25A4).
“The occurrence of multiple mtDNA deletions of varying lengths in affected tissues may be due to inherited mutations in nuclear genes, whose products are involved in mtDNA maintenance and replication (e.g., POLG and PEO1 encoding Twinkle) and mitochondrial nucleotide metabolism (e.g., SLC25A4) [88][89][90].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [88][89][90]
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- Premisecitation
A dominant mt-tRNA mutation, m.5545C>T in the MT-TW gene, was recently reported with levels of mutation at <25% in clinically affected tissues.
“To complicate matters further, a dominant mt-tRNA mutation, m.5545C N T in the MT-TW gene, was recently reported with levels of mutation at b25% in clinically affected tissues [83].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [83] Sacconi, 2008, A functionally dominant mitochondrial DNA mutation, Hum. Mol. Genet. source
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- Premisecitation
The observation of rapid segregation in mammalian heteroplasmic mtDNA genotypes between generations, with a return to homoplasmy in some progeny, has suggested the existence of a mtDNA bottleneck during development.
“The observation of a rapid segregation in mammalian heteroplasmic mtDNA genotypes between generations, with a return to homoplasmy in some progeny, has suggested the existence of a mtDNA bottleneck during development [67][68][69][70][71][72].”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [67][68][69][70][71][72]
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- Premisecitation
An average annual 1% decrease in m.3243A>G mutation levels in blood has been described.
“For example, an average annual 1% decrease in m.3243A N G mutation levels in blood has been described [63].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [63] Rahman, 2001, Decrease of 3243 A–>G mtDNA mutation from blood in MELAS syndrome: a longitudinal study, Am. J. Hum. Genet. source
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- Premisecitation
Over 80% of patients with MELAS have the m.3243A>G mutation in the MT-TL1 gene.
“Over 80% of patients with MELAS have the m.3243A N G mutation in the MT-TL1 gene [109,110].”
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Pearson syndrome is characterised by a very high level of large-scale single mtDNA deletion present in all tissues.
“In these children, there is a very high level of large-scale single mtDNA deletion present in all tissues [108].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [108] Rotig, 1990, Pearson's marrow–pancreas syndrome. A multisystem mitochondrial disorder in infancy, J. Clin. Invest. source
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- Premisecitation
Three primary LHON mtDNA mutations (m.11778G>A, m.3460G>A, and m.14484T>C) in total are present in at least 95% of LHON cases.
“There are three primary LHON mtDNA mutations (m.11778G N A, m.3460G N A, and m.14484T N C), which in total are present in at least 95% of LHON cases [56,124].”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites [56] MITOMAP: A Human Mitochondrial Genome Database. http://www.mitomap.org. 2009.
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- cites [124] Man, 2002, Leber hereditary optic neuropathy, J. Med. Genet. source
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- Premisecitation
Patients with a mutant load greater than 95% m.8993T>G have an onset in childhood with maternally inherited Leigh syndrome (MILS).
“It has subsequently been recognised that patients with a mutant load greater than 95% m.8993T N G have an onset in childhood with maternally inherited Leigh syndrome (MILS) [123].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [123] Tatuch, 1992, Heteroplasmic mtDNA mutation (T----G) at 8993 can cause Leigh disease when the percentage of abnormal mtDNA is high, Am. J. Hum. Genet.
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- Premisecitation
The amount and tissue distribution of the deleted mtDNA are the most important factors in determining clinical symptoms, and not the size and location of the deletions.
“The amount and tissue distribution of the deleted mtDNA are the most important factors in determining clinical symptoms, and not, as one might expect, the size and location of the deletions [99][100][101].”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [99][100][101]
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An increasing number of pathogenic homoplasmic mutations, often affecting just a single tissue and characterised by incomplete penetrance, are being recognised.
“However, an increasing number of pathogenic homoplasmic mutations, often affecting just a single tissue and characterised by incomplete penetrance, are being recognised [77][78][79][80][81][82].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [77][78][79][80][81][82]
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Certain nucleotide changes that are not pathogenic per se may modulate the effects of deleterious mtDNA mutations.
“Also, it has been frequently recognised that certain nucleotide changes that are not pathogenic per se may modulate the effects of deleterious mtDNA mutations [84,85].”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites [84] Swalwell, 2008, A homoplasmic mtDNA variant can influence the phenotype of the pathogenic m.7472Cins MTTS1 mutation: are two mutations better than one?, Eur. J. Hum. Genet. source
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- cites [85] Cai, 2008, Mitochondrial variants may influence the phenotypic manifestation of Leber's hereditary optic neuropathy-associated ND4 G11778A mutation, J. Genet. Genomics source
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- Premisecitation
This expansion is thought to be a result of random genetic drift, dependent on relaxed replication of the mitochondrial genome.
“This expansion is thought to be a result of random genetic drift, dependent on relaxed replication of the mitochondrial genome [66].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [66] Elson, 2001, Random intracellular drift explains the clonal expansion of mitochondrial DNA mutations with age, Am. J. Hum. Genet. source
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- Premisecitation
KSS is a multisystem disorder caused by single, large-scale deletions.
“KSS is a multisystem disorder caused by single, large-scale deletions [107].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [107] Maceluch, 2006, The clinical diagnosis and molecular genetics of Kearns–Sayre syndrome: a complex mitochondrial encephalomyopathy, Pediatr. Endocrinol. Rev.
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- Premisecitation
An exponential accumulation of multiple mtDNA deletions has been reported in aged postmitotic tissues and individuals with neurodegenerative diseases.
“An exponential accumulation of multiple mtDNA deletions has also been reported in aged postmitotic tissues and individuals with neurodegenerative diseases [91][92][93].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [91][92][93]
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- Premisecitation
A naturally occurring canine model of mitochondrial disease has been reported recently.
“Only very recently has a naturally occurring canine model of mitochondrial disease been reported.”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [150] Baranowska, 2009, Sensory ataxic neuropathy in golden retriever dogs is caused by a deletion in the mitochondrial tRNATyr gene, PLoS Genet. source
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Manipulating nuclear genes regulating mtDNA maintenance and replication (TFAM, POLG, PEO1) is a more successful approach to developing mouse models of mitochondrial disease.
“Alternative and more successful approaches to developing mouse models of mitochondrial disease involve manipulating the nuclear genes that regulate mtDNA maintenance and replication, such as TFAM [176][177][178][179][180][181][182], POLG ('Mutator' model) [183], and PEO1 (Twinkle; 'Deletor' model) [184].”
Quote in the paperNot a substantial claim0 of 3 sources checked- cites [176] Li, 2000, Genetic modification of survival in tissue-specific knockout mice with mitochondrial cardiomyopathy, Proc. Natl. Acad. Sci. U. S. A. source
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- Premisecitation
Overexpression of EFTu and leucyl-tRNA synthetase rescues mitochondrial dysfunction caused by yeast equivalents of the m.3243A N G, m.3256C N T, and m.3291T N C MELAS mutations.
“Overexpression of both the mitochondrial translation elongation factor EFTu [162] and the mitochondrial leucyl-tRNA synthetase [163] has been reported to rescue mitochondrial dysfunction caused by the yeast equivalents of the m.3243A N G, m.3256C N T, and m.3291T N C MELAS mutations.”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites [162] Feuermann, 2003, The yeast counterparts of human ‘MELAS’ mutations cause mitochondrial dysfunction that can be rescued by overexpression of the mitochondrial translation factor EF-Tu, EMBO Rep. source
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- cites [163] De Luca, 2006, Mutations in yeast mt tRNAs: specific and general suppression by nuclear encoded tRNA interactors, Gene source
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- Premisecitation
Directional selection for one mtDNA genotype in certain tissues, mediated by single tissue-specific factors, has been repeatedly observed.
“However, the repeated observation of directional selection for one mtDNA genotype in certain tissues [170], mediated by single tissue-specific factors [171], suggests these mouse models will be particularly important in our quest to understanding the basis of tissue specificity and mtDNA somatic segregation.”
Quote in the paperSubstantial claim0 of 2 sources checked- cites [170] Battersby, 2003, Nuclear genetic control of mitochondrial DNA segregation, Nat. Genet. source
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- cites [171] Battersby, 2005, Mitochondrial DNA segregation in hematopoietic lineages does not depend on MHC presentation of mitochondrially encoded peptides, Hum. Mol. Genet. source
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- Premisecitation
A single heteroplasmic mt-tRNA Tyr deletion (m.5304delT of dog mtDNA) is responsible for sensory ataxic neuropathy in golden retrievers.
“A single heteroplasmic mt-tRNA Tyr deletion (m.5304delT of dog mtDNA) has been found to be responsible for the neurological disorder sensory ataxic neuropathy in golden retrievers [150].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [150] Baranowska, 2009, Sensory ataxic neuropathy in golden retriever dogs is caused by a deletion in the mitochondrial tRNATyr gene, PLoS Genet. source
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- Premisecitation
MERRF is a progressive, neurodegenerative disease caused most commonly by a point mutation in the MT-TK gene, m.8344A>G.
“MERRF is a progressive, neurodegenerative disease caused most commonly by a point mutation in the MT-TK gene, m.8344A N G [126][127][128].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [126][127][128]
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- Premisecitation
Injection of m.3243A N G mutated mitochondria into C57BL/6J mouse zygotes led to respiratory dysfunction and enhanced ROS production in heteroplasmic tissues.
“and the injection of m.3243A N G mutated mitochondria into C57BL/6J mouse zygotes led to respiratory dysfunction and enhanced ROS production in heteroplasmic tissues [175].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [175] Li, 2008, Increased ROS generation and SOD activity in heteroplasmic tissues of transmitochondrial mice with A3243G mitochondrial DNA mutation, Genet. Mol. Res. source
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- Premisecitation
Both ρ0 and cybridisation processes can cause significant and stable up-regulation of many nuclear transcripts involved in OXPHOS, even after repopulation of ρ0 cells with wild-type mitochondria.
“Indeed, microarray studies have demonstrated that both processes can cause significant and stable up-regulation of many nuclear transcripts involved in OXHOS, even after repopulation of ρ 0 cells with wild-type mitochondria [157,158].”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites [157] Behan, 2005, Adaptive responses to mitochondrial dysfunction in the rho zero Namalwa cell, Mitochondrion source
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- cites [158] Danielson, 2005, Isolation of transcriptomal changes attributable to LHON mutations and the cybridization process, Brain source
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- Premisecitation
Two heteroplasmic point mutations in MT-ND6 (m.13885insC) and MT-CO1 (m.6589T N C) resulted in myopathy and cardiomyopathy.
“Two heteroplasmic point mutations introduced in MT-ND6 (m.13885insC) and MT-CO1 (m.6589T N C) resulted in myopathy and cardiomyopathy [174]”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [174] Fan, 2008, A mouse model of mitochondrial disease reveals germline selection against severe mtDNA mutations, Science source
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- Interpretationreasoning
The transcriptome changes caused by ρ0 and cybridisation may partly explain why in vivo phenotypes are not always replicated in cybrids.
“These observations might in part explain why in vivo phenotypes are not always replicated in an in vitro cybrid system.”
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The first heteroplasmic mice were generated by cytoplasmic fusion of two normal mouse strains carrying distinct haplotypes.
“The first heteroplasmic mice were generated by cytoplasmic fusion of two normal mouse strains carrying distinct haplotypes [74,169].”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites [74] Jenuth, 1996, Random genetic drift in the female germline explains the rapid segregation of mammalian mitochondrial DNA, Nat. Genet. source
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- cites [169] Jenuth, 1997, Tissue-specific selection for different mtDNA genotypes in heteroplasmic mice, Nat. Genet. source
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m.611G N A decreases aminoacylation activity 100-fold in vitro.
“Recent examples include the mt-tRNA Phe m.611G N A mutation, which decreases aminoacylation activity 100-fold in vitro [203]”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [203] Ling, 2007, Pathogenic mechanism of a human mitochondrial tRNAPhe mutation associated with myoclonic epilepsy with ragged red fibers syndrome, Proc. Natl. Acad. Sci. U. S. A. source
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m.8344A N G decreases mt-tRNA stability in vitro and in cybrid osteosarcoma cells.
“Finally, decreased mt-tRNA stability has been described with the m.8344A N G mutation both in vitro and in cybrid osteosarcoma cells [198,202].”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites [198] Yasukawa, 2000, Defect in modification at the anticodon wobble nucleotide of mitochondrial tRNA(Lys) with the MERRF encephalomyopathy pathogenic mutation, FEBS Lett. source
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- cites [202] Enriquez, 1995, MtDNA mutation in MERRF syndrome causes defective aminoacylation of tRNA(Lys) and premature translation termination, Nat. Genet. source
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- Premisecitation
m.3243A N G disrupts the L-shaped tertiary fold of mt-tRNA Leu(UUR) by preventing A14/U8 interaction.
“whereas m.3243A N G, in the DHU stem, is responsible for a dramatic structural change, which disrupts both the L-shaped tertiary fold of mt-tRNA Leu(UUR) by preventing np A14/U8 interaction [200]”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [200] Roy, 2005, Structural probing of a pathogenic tRNA dimer, RNA source
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- Premisecitation
m.3243A N G impairs correct transcription of 16S mt-rRNA by interfering with a transcription termination site, causing accumulation of RNA19.
“Correct transcription of 16S mt-rRNA is impaired by the common mt-tRNA Leu(UUR) m.3243A N G mutation, which interferes with a transcription termination site located at the boundary of the 16S mt-rRNA and mt-tRNA Leu(UUR) genes, causing accumulation of an unprocessed RNA intermediate (RNA19) including 16S mt-rRNA, mt-tRNA Leu(UUR) and MTND1 [191][192][193].”
Quote in the paperNot a substantial claim0 of 3 sources checked- cites [191] Hess, 1991, Impairment of mitochondrial transcription termination by a point mutation associated with the MELAS subgroup of mitochondrial encephalomyopathies, Nature source
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- cites [192] King, 1992, Defects in mitochondrial protein synthesis and respiratory chain activity segregate with the tRNA(Leu(UUR)) mutation associated with mitochondrial myopathy, encephalopathy, lactic acidosis, and strokelike episodes, Mol. Cell. Biol. source
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- cites [193] Chomyn, 2000, The mitochondrial myopathy, encephalopathy, lactic acidosis, and stroke-like episode syndrome-associated human mitochondrial tRNALeu(UUR) mutation causes aminoacylation deficiency and concomitant reduced association of mRNA with ribosomes, J. Biol. Chem. source
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- Premisenone given
Mt-tRNA mutations invariably result in structural defects ranging from mild to severe.
“Mt-tRNA mutations invariably result in structural defects, which may range from mild to severe.”
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m.3243A N G disrupts quaternary structure by promoting formation of a dimeric complex via intermolecular D-loop base pairing.
“and its quaternary structure by promoting the formation of a dimeric complex by intermolecular D-loop base pairing [201].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [201] Wittenhagen, 2002, Dimerization of a pathogenic human mitochondrial tRNA, Nat. Struct. Biol.
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m.7512T N C causes slight localised kinking of the acceptor stem.
“The mt-tRNA Ser(UCN) m.7512T N C mutation causes slight localised kinking of the acceptor stem [199]”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [199] Mollers, 2005, A new mechanism for mtDNA pathogenesis: impairment of post-transcriptional maturation leads to severe depletion of mitochondrial tRNASer(UCN) caused by T7512C and G7497A point mutations, Nucleic Acids Res. source
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- Premisecitation
Genes involved in cellular metabolic pathways (TCA cycle, energy production, amino acid metabolism) are up-regulated in various models with mtDNA mutations (4977 bp macrodeletion, LHON m.3460G N A and m.11778G N A, m.8993T N G NARP, m.3243A N G).
“For example, genes involved in cellular metabolic pathways, such as the TCA cycle, energy production, and amino acid metabolism, are reportedly up-regulated not only in patients with the 4977 bp macrodeletion [211], but also in two lymphoblast cybrid cells containing the LHON mutations m.3460G N A (in the MT-ND1 gene) and m.11778G N A (MT-ND4 gene) [158], in a 143B osteosarcoma cybrid cell line”
Quote in the paperNot a substantial claim0 of 3 sources checked- cites [211] Crimi, 2005, Skeletal muscle gene expression profiling in mitochondrial disorders, FASEB J. source
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- cites [158] Danielson, 2005, Isolation of transcriptomal changes attributable to LHON mutations and the cybridization process, Brain source
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- Premisecitation
Posttranscriptional modifications of mt-tRNA Lys m.8344A N G mutant mt-tRNAs are dependent on nuclear background.
“Similarly, posttranscriptional modifications of mt-tRNA Lys m.8344A N G mutant mt-tRNAs are also dependent on nuclear background [196,198].”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites [196] Helm, 1999, Search for differences in post-transcriptional modification patterns of mitochondrial DNA-encoded wild-type and mutant human tRNALys and tRNALeu(UUR), Nucleic Acids Res. source
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- cites [198] Yasukawa, 2000, Defect in modification at the anticodon wobble nucleotide of mitochondrial tRNA(Lys) with the MERRF encephalomyopathy pathogenic mutation, FEBS Lett. source
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- Premisecitation
m.3243A N G impairs methylation of mt-tRNA Leu(UUR) in cybrid osteosarcoma cells.
“Interestingly, m.3243A N G has been shown to impair methylation of mt-tRNA Leu(UUR) in cybrid osteosarcoma cells [196]”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [196] Helm, 1999, Search for differences in post-transcriptional modification patterns of mitochondrial DNA-encoded wild-type and mutant human tRNALys and tRNALeu(UUR), Nucleic Acids Res. source
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- Premisecitation
m.3243A N G prevents taurine modification of the anticodon wobble position (U34) in cybrid HeLa cells.
“but to prevent taurine modification of the anticodon wobble position (U34) in cybrid HeLa cells [197].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [197] Yasukawa, 2000, Modification defect at anticodon wobble nucleotide of mitochondrial tRNAs(Leu)(UUR) with pathogenic mutations of mitochondrial myopathy, encephalopathy, lactic acidosis, and stroke-like episodes, J. Biol. Chem. source
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- Premisecitation
m.3256C N T, m.3260A N T, and m.3271T N C lead to impaired RNase P processing of 5′-leader sequences in vitro.
“Mt-tRNA Leu(UUR) mutations m.3256C N T, m.3260A N T and m.3271T N C lead to impaired RNase P processing of 5′-leader sequences in vitro [194]”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [194] Rossmanith, 1998, Impairment of tRNA processing by point mutations in mitochondrial tRNA(Leu)(UUR) associated with mitochondrial diseases, FEBS Lett. source
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m.4269A N G impairs binding affinity for EFTu two-fold by altering mt-tRNA Ile T-stem structure.
“By altering mt-tRNA Ile T-stem structure, the mutation m.4269A N G impairs binding affinity for EFTu two-fold [205].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [205] Hino, 2004, The pathogenic A4269G mutation in human mitochondrial tRNA(Ile) alters the T-stem structure and decreases the binding affinity for elongation factor Tu, Genes Cells source
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- Premisecitation
m.7445T N C reduces the efficiency of 3′-cleavage.
“whilst the mt-tRNA Ser(UCN) m.7445T N C transition reduces the efficiency of 3′-cleavage [195].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [195] Levinger, 2001, In vitro 3′-end endonucleolytic processing defect in a human mitochondrial tRNA(Ser(UCN)) precursor with the U7445C substitution, which causes non-syndromic deafness, Nucleic Acids Res. source
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Quantitative analysis of ~800 spots revealed almost 5% with significant quantitative variations in m.8344A N G mutant cybrid cell lines versus control.
“Subsequently, quantitative analysis of N800 total detectable spots revealed almost 5% with significant quantitative variations in m.8344A N G mutant cybrid cell lines versus control [220].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [220] Tryoen-Toth, 2003, Proteomic consequences of a human mitochondrial tRNA mutation beyond the frame of mitochondrial translation, J. Biol. Chem. source
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Antigenomic therapy with PNAs showed promising initial results in vitro.
“Antigenomic therapy, which involves using sequence-specific nucleic acid derivatives that selectively target and inhibit the replication of mutated mtDNA thus allowing the wild-type genome to propagate, showed promising initial results in vitro with peptide nucleic acids (PNAs) [234].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [234] Taylor, 1997, Selective inhibition of mutant human mitochondrial DNA replication in vitro by peptide nucleic acids, Nat. Genet. source
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- Premisecitation
Rubio et al. demonstrated import of cytosolic tRNA Gln(CUG) and tRNA Gln(UUG) in rat and human mitochondria in vivo by a mechanism distinct from protein import.
“Recently, Rubio et al. [243] have demonstrated the import of cytosolic tRNA Gln(CUG) and tRNA Gln(UUG) in rat and human mitochondria in vivo, by a mechanism distinct from that of protein import.”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [243] Rubio, 2008, Mammalian mitochondria have the innate ability to import tRNAs by a mechanism distinct from protein import, Proc. Natl. Acad. Sci. U. S. A. source
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- Premisecitation
Daily aerobic exercise benefits conditional COX10 knockout mice, which typically develop severe myopathy at ~2.5-3 months.
“Recently, the benefits of daily aerobic exercise have been further demonstrated in conditional COX10 knockout mice, which typically develop severe myopathy at ∼ 2.5-3 months [231].”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [231] Wenz, 2009, Endurance exercise is protective for mice with mitochondrial myopathy, J. Appl. Physiol. source
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mtDNA deletions exert a negative effect on cell proliferation and cell cycle.
“Furthermore, the mtDNA deletions were shown to exert a negative effect on cell proliferation and cell cycle.”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [215] Alemi, 2007, Mitochondrial DNA deletions inhibit proteasomal activity and stimulate an autophagic transcript, Free Radic. Biol. Med. source
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- Premisecitation
Aminoacylation efficiency of mutant mt-tRNA Phe with m.611G N A was significantly improved by modifying the mt-tRNA binding domain of cognate phenylalanyl-tRNA synthetase.
“Aminoacylation efficiency of mutant mt-tRNA Phe , carrying the m.611G N A MERRF mutation, was significantly improved following modification of the mt-tRNA binding domain of the cognate phenylalanyl-tRNA synthetase [203].”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [203] Ling, 2007, Pathogenic mechanism of a human mitochondrial tRNAPhe mutation associated with myoclonic epilepsy with ragged red fibers syndrome, Proc. Natl. Acad. Sci. U. S. A. source
Not checked in the free run.
- Premisecitation
CMCO:PNA hybrid molecules have been successfully targeted and imported into mitochondria in whole cells.
“Molecules with greater polarity have since been designed (cell membrane crossing oligomers, CMCOs), and CMCO:PNA hybrid molecules have been successfully targeted and imported into mitochondria in whole cells [235].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [235] Kyriakouli, 2008, Progress and prospects: gene therapy for mitochondrial DNA disease, Gene Ther. source
Not checked in the free run.
- Premisecitation
Yeast tRNA Lys derivatives can be expressed and imported into mitochondria in cybrid cells and primary human fibroblasts with m.8344A N G MERRF mutation.
“For mt-tRNA mutations, yeast tRNA Lys derivatives can be expressed and imported into mitochondria within cybrid cells and primary human fibroblasts harbouring the m.8344A N G MERRF mutation.”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [242] Kolesnikova, 2004, Nuclear DNA-encoded tRNAs targeted into mitochondria can rescue a mitochondrial DNA mutation associated with the MERRF syndrome in cultured human cells, Hum. Mol. Genet. source
Not checked in the free run.
- Premisecitation
Targeted chimaeric zinc finger DNA methylase can bind and modify mutant genomes in cells with m.8993T N G NARP mutation.
“Selective targeting of mutated mtDNA has also been successfully attempted with a targeted chimaeric zinc finger DNA methylase, which can bind and modify, in a sequence-specific manner, mutant genomes in cells harbouring the m.8993T N G NARP mutation [237].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [237] Minczuk, 2006, Sequence-specific modification of mitochondrial DNA using a chimeric zinc finger methylase, Proc. Natl. Acad. Sci. U. S. A. source
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- Premisecitation
In muscle and six cybrid cell lines containing 4977 bp and 7.5 kb mtDNA deletions, expression of metabolic pathway genes and nuclear OXPHOS genes is reduced relative to controls.
“The transcriptomes of muscle and six cybrid cell lines containing 4977 bp and 7.5 kb mtDNA deletions revealed a reduction in the expression of metabolic pathway genes and nuclear OXPHOS genes relative to controls.”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [215] Alemi, 2007, Mitochondrial DNA deletions inhibit proteasomal activity and stimulate an autophagic transcript, Free Radic. Biol. Med. source
Not checked in the free run.
- Premisecitation
Expression levels of nuclear-encoded CIV subunits Vb and VIa were dramatically reduced in both m.8344A N G and m.3243A N G mutant cybrid cell lines relative to wild-type.
“In particular, the expression levels of two proteins, both nuclear-encoded subunits of CIV (Vb and VIa), were shown to be dramatically reduced in both mutant cell lines relative to their sibling wild-type.”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [219] Rabilloud, 2002, Comparative proteomics as a new tool for exploring human mitochondrial tRNA disorders, Biochemistry source
Not checked in the free run.
- Interpretationreasoning
Nuclear OXPHOS gene up-regulation may be considered a generic compensatory effect for mitochondrial dysfunction.
“Nuclear OXPHOS gene up-regulation may thus be considered a generic compensatory effect for mitochondrial dysfunction.”
Quote in the paperNot a substantial claim - Premisecitation
Inhibition of CI or CIV caused changes in expression levels of apoptotic, cytoskeletal, and OXPHOS proteins, as well as proteins involved in TCA cycle, glycolysis, and oxidative stress responses.
“Inhibition of CI or CIV caused changes in the expression levels of apoptotic, cytoskeletal, and OXPHOS proteins, as well as proteins involved in TCA cycle, glycolysis, and oxidative stress responses.”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [224] Annunen-Rasila, 2007, Proteome and cytoskeleton responses in osteosarcoma cells with reduced OXPHOS activity, Proteomics source
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- Premisecitation
The outcome of specific pregnancies remains unpredictable due to the genetic bottleneck, which leads to considerable variation in the proportion of mutant mtDNA in different offspring.
“The outcome of specific pregnancies remains unpredictable due to the genetic bottleneck, which leads to considerable variation in the proportion of mutant mtDNA in different offspring [248].”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [248] Brown, 2001, Random genetic drift determines the level of mutant mtDNA in human primary oocytes, Am. J. Hum. Genet. source
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- Premisecitation
Present evidence suggests that the mutation load detected in the prenatal sample accurately reflects the heteroplasmy levels in other foetal tissues.
“Whilst there is concern whether the mutation load detected in the prenatal sample would accurately reflect the heteroplasmy levels in other foetal tissues, present evidence suggests that this should not be a problem [169,249].”
Quote in the paperSubstantial claim0 of 2 sources checked- cites [169] Jenuth, 1997, Tissue-specific selection for different mtDNA genotypes in heteroplasmic mice, Nat. Genet. source
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- cites [249] White, 1999, Two cases of prenatal analysis for the pathogenic T to G substitution at nucleotide 8993 in mitochondrial DNA, Prenat. Diagn. source
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- Premisecitation
Ndi1 protects against neurodegeneration in rats fed MPTP.
“and also protect against neurodegeneration in rats fed with MPTP, a hallucinogen known to cause a form of Parkinson's disease (PD) [245].”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [245] Marella, 2008, Protection by the NDI1 gene against neurodegeneration in a rotenone rat model of Parkinson's disease, PLoS One source
Not checked in the free run.
- Premisecitation
Preimplantation genetic diagnosis has only been successfully completed in one case of mtDNA disease.
“Despite its promise, PGD has only been successfully completed in one case of mtDNA disease [251].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [251] Steffann, 2006, Analysis of mtDNA variant segregation during early human embryonic development: a tool for successful NARP preimplantation diagnosis, J. Med. Genet. source
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- Premisecitation
In m.3243A N G cells, overexpression of leucyl synthetase recovers wild-type RC function.
“In mutant m.3243A N G cells, this overexpression was capable of recovering wildtype RC function.”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [166] Park, 2008, Overexpressed mitochondrial leucyl-tRNA synthetase suppresses the A3243G mutation in the mitochondrial tRNA(Leu(UUR)) gene, Rna source
Not checked in the free run.
- Interpretationreasoning
Accurate genetic counselling for families affected by mtDNA mutations is extremely challenging.
“This makes accurate genetic counselling for families affected by mtDNA mutations extremely challenging.”
Quote in the paperSubstantial claim - Interpretationreasoning
Preimplantation genetic diagnosis may be limited by tissue-specific differences in mutational load.
“This technique may similarly be limited by tissue-specific differences in mutational load.”
Quote in the paperNot a substantial claim - Premisecitation
Previous studies in heteroplasmic mice have suggested the feasibility of pronuclear transfer.
“Previous studies in heteroplasmic mice have suggested the feasibility of this approach [253].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [253] Sato, 2005, Gene therapy for progeny of mito-mice carrying pathogenic mtDNA by nuclear transplantation, Proc. Natl. Acad. Sci. U. S. A. source
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- Premisecitation
Mitochondrial targeting of S. cerevisiae Ndi1 rescues complex I deficiency in human cells.
“Mitochondrial targeting of the S.cerevisiae single subunit NADH oxidase, Ndi1, has been shown to rescue complex I deficiency in human cells [244]”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [244] Yagi, 2001, NADH dehydrogenases: from basic science to biomedicine, J. Bioenerg. Biomembr. source
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- Classified as probably not a substantial claim. 6
- May combine two claims. 36
Probably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationMore than 250 pathogenic mtDNA mutations have been identified.
“Currently, more than 250 pathogenic mtDNA mutations have been identified.”
- Also stated in: § 3. Clinical features of human mtDNA disease · plain
“Since then, over 250 pathogenic mtDNA mutations (point mutations and rearrangements) have been characterised [56]”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [56] MITOMAP: A Human Mitochondrial Genome Database. http://www.mitomap.org. 2009.
Not checked in the free run.
- Also stated in: § 3. Clinical features of human mtDNA disease · plain
Probably not a substantial claim: may not pass S3 (load-bearing), S4 (based).
Interpretationnone givenThe onset of clinical symptoms, phenotypic variability, and variable penetrance of mitochondrial diseases are governed by a number of factors, including the threshold effect, mitotic segregation, clonal expansion, and a genetic bottleneck.
“The onset of clinical symptoms, phenotypic variability, and variable penetrance of mitochondrial diseases are governed by a number of factors, including the threshold effect, mitotic segregation, clonal expansion, and a genetic bottleneck.”
Quote in the paperNot a substantial claim- Rests on an assumption: In heteroplasmy, the ratio of wild-type to mutant mtDNA determines the onset of clinical symptoms.
- Rests on an assumption: A minimum critical proportion of mutated mtDNAs is necessary before biochemical defects and tissue dysfunction become apparent.
- Rests on an assumption: The threshold level varies for each mutation and differs amongst tissues, being lower in tissues highly dependent on OXPHOS metabolism than in tissues that can rely on anaerobic glycolysis.
- Rests on an assumption: Typically, the threshold value is in the range of 60%-90% mutant to wild-type mtDNA.
- Rests on an assumption: During mitosis, mitochondria are randomly segregated, and in heteroplasmic cells, the proportion of mutant mtDNA in the daughter cells can shift.
- Rests on an assumption: If the mutant load exceeds the pathogenic threshold for that tissue, clinical expression of the disease can occur.
- Rests on an assumption: Mutant mtDNA may be lost, particularly in fast-dividing tissues.
May combine two claims.
InterpretationreasoningmtDNA repair systems are not sufficient to counteract the oxidative damage sustained by the mitochondrial genome due to its proximity to the RC complexes in the IMM and the ROS they generate, and protective histones are lacking.
“they are not sufficient to counteract the oxidative damage sustained by the mitochondrial genome due to its proximity to the RC complexes in the IMM and the ROS they generate.Protective histones are also lacking.”
Quote in the paperSubstantial claimMay combine two claims.
PremisecitationAlthough the threshold level can partly explain the disease phenotypes observed in patients, an exact correlation between clinical severity and the proportion of mtDNA mutation is lacking.
“Although the threshold level can partly explain the disease phenotypes observed in patients, an exact correlation between clinical severity and the proportion of mtDNA mutation is lacking [62].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [62] Wong, 2007, Diagnostic challenges of mitochondrial DNA disorders, Mitochondrion source
Not checked in the free run.
- Rests on an assumption: In heteroplasmy, the ratio of wild-type to mutant mtDNA determines the onset of clinical symptoms.
- Rests on an assumption: A minimum critical proportion of mutated mtDNAs is necessary before biochemical defects and tissue dysfunction become apparent.
- Rests on an assumption: The threshold level varies for each mutation and differs amongst tissues, being lower in tissues highly dependent on OXPHOS metabolism than in tissues that can rely on anaerobic glycolysis.
- Rests on an assumption: Typically, the threshold value is in the range of 60%-90% mutant to wild-type mtDNA.
Probably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationClonal expansion refers to the preferential amplification of mtDNA mutations to a high level in post-mitotic tissues.
“Clonal expansion refers to the preferential amplification of mtDNA mutations to a high level in post-mitotic tissues [64,65].”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites [64] Larsson, 1990, Progressive increase of the mutated mitochondrial DNA fraction in Kearns–Sayre syndrome, Pediatr. Res. source
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- cites [65] Weber, 1997, A new mtDNA mutation showing accumulation with time and restriction to skeletal muscle, Am. J. Hum. Genet.
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May combine two claims.
PremisecitationCPEO is typically caused by sporadic large-scale single deletions or multiple mtDNA deletions, although mtDNA point mutations are detected in some patients (e.g., m.3243A>G, m.12316G>A).
“CPEO is typically caused by sporadic large-scale single deletions or multiple mtDNA deletions [119,120], although mtDNA point mutations are detected in some patients (e.g., m.3243A N G [121], m.12316G N A [122]).”
Quote in the paperNot a substantial claim0 of 4 sources checked- cites [119] Moraes, 1989, Mitochondrial DNA deletions in progressive external ophthalmoplegia and Kearns–Sayre syndrome, N. Engl. J. Med. source
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- cites [120] Van Goethem, 2003, Progressive external ophthalmoplegia characterized by multiple deletions of mitochondrial DNA: unraveling the pathogenesis of human mitochondrial DNA instability and the initiation of a genetic classification, Neuromol. Med. source
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- cites [121] Moraes, 1993, Atypical clinical presentations associated with the MELAS mutation at position 3243 of human mitochondrial DNA, Neuromuscul. Disord. source
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- cites [122] Cardaioli, 2008, Chronic progressive external ophthalmoplegia: a new heteroplasmic tRNA(Leu(CUN)) mutation of mitochondrial DNA, J. Neurol. Sci. source
Not checked in the free run.
May combine two claims.
PremisecitationSingle mtDNA deletions occur sporadically early in development, and the identical deletion is present in all cells within affected tissues.
“Single mtDNA deletions occur sporadically early in development, and the identical deletion is present in all cells within affected tissues [87].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [87] Chen, 1995, Rearranged mitochondrial genomes are present in human oocytes, Am. J. Hum. Genet.
Not checked in the free run.
May combine two claims.
PremisecitationLeigh syndrome is due to severe failure of oxidative metabolism and can be due to a variety of different genetic defects affecting either the mitochondrial (e.g., m.8993T>C/G, m.10158T>C, m.10191T>C) or nuclear genome (e.g., SURF1 gene).
“Leigh syndrome is due to severe failure of oxidative metabolism and can be due to a variety of different genetic defects affecting either the mitochondrial (e.g., m.8993T N C/G, m.10158T N C, m.10191T N C) or nuclear genome (e.g., SURF1 gene) [105].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [105] Finsterer, 2008, Leigh and Leigh-like syndrome in children and adults, Pediatr. Neurol. source
Not checked in the free run.
May combine two claims.
PremisecitationMost mtDNA deletions share common features: they mainly occur between the origins of replication, O_H and O_L, and are typically flanked by short direct repeats.
“They mainly occur between the origins of replication, O H and O L , and are typically flanked by short direct repeats [94,95].”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites [94] Bua, 2006, Mitochondrial DNA-deletion mutations accumulate intracellularly to detrimental levels in aged human skeletal muscle fibers, Am. J. Hum. Genet. source
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- cites [95] Samuels, 2004, Two direct repeats cause most human mtDNA deletions, Trends Genet. source
Not checked in the free run.
May combine two claims.
PremisecitationThe majority of mtDNA rearrangement mutations are large-scale deletions, which vary in size from 1.3 to 8 kb and span several genes.
“The majority of mtDNA rearrangement mutations are large-scale deletions, which vary in size from 1.3 to 8 kb and span several genes [86].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [86] Schon, 1989, A direct repeat is a hotspot for large-scale deletion of human mitochondrial DNA, Science source
Not checked in the free run.
Probably not a substantial claim: may not pass S2 (checkable).
InterpretationreasoningA mammalian in vivo model system is ultimately necessary for answering questions about mtDNA biology, mitochondrial disease pathogenesis, and tissue specificity.
“Whilst cybrids and yeast have helped to further our current understanding of mitochondrial genetics and the molecular mechanisms of disease, a mammalian in vivo model system is ultimately necessary for answering the many questions regarding mtDNA biology, mitochondrial disease pathogenesis and tissue specificity that still remain.”
Quote in the paperNot a substantial claimMay combine two claims.
PremisecitationCybrids have identified the first mt-tRNA suppressor mutation (m.12300G N A in MT-L2) and the first functionally dominant mt-tRNA mutation (m.5545C N T in MT-TW).
“In addition, these cell models have challenged our established criteria for pathogenicity with the identification of the first mt-tRNA suppressor mutation, m.12300G N A in MT-L2 [154], and the first functionally dominant mt-tRNA mutation, m.5545C N T in MT-TW [155].”
Quote in the paperNot a substantial claim0 of 2 sources checkedMay combine two claims.
PremisecitationA global decrease in the activity of COX is usually suggestive of a nuclear mutation in an ancillary protein required for COX assembly such as SURF1 but can be associated with some homoplasmic mt-tRNA defects.
“A global decrease in the activity of COX is usually suggestive of a nuclear mutation in an ancillary protein required for COX assembly such as SURF1 but can be associated with some homoplasmic mt-tRNA defects [77,78].”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites [77] McFarland, 2002, Multiple neonatal deaths due to a homoplasmic mitochondrial DNA mutation, Nat. Genet. source
Not checked in the free run.
- cites [78] Taylor, 2003, A homoplasmic mitochondrial transfer ribonucleic acid mutation as a cause of maternally inherited hypertrophic cardiomyopathy, J. Am. Coll. Cardiol. source
Not checked in the free run.
May combine two claims.
PremisecitationThe assessment of m.3243A>G mutation load in urinary sediments not only provides a correlate with the level in muscle but also has proven to be an accurate indicator of clinical outcome for these patients.
“The assessment of m.3243A N G mutation load in urinary sediments not only provides a correlate with the level in muscle but also has proven to be an accurate indicator of clinical outcome for these patients [138].”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [138] Whittaker, 2009, Urine heteroplasmy is the best predictor of clinical outcome in the m.3243A>G mtDNA mutation, Neurology source
Not checked in the free run.
May combine two claims.
PremisereasoningCybrids allow selected mtDNA sequences to be expressed against fixed nuclear backgrounds, enabling study of genetic origin, functional and physiological consequences of heteroplasmy, and molecular mechanisms of mtDNA mutations.
“By allowing selected mtDNA sequences to be expressed against fixed nuclear backgrounds, not only can cybrids be employed for establishing and/or confirming the genetic origin of a mitochondrial disorder, but they can also provide a controlled environment in which to study both the functional and physiological consequences of varying levels of heteroplasmy of specific mtDNA mutations as well as the”
Quote in the paperSubstantial claimMay combine two claims.
InterpretationreasoningIt is unlikely that a reduced respiration rate is solely responsible for the variability of mitochondrial disorder phenotypes; additional molecular mechanisms must contribute to the development and clinical presentation of disease.
“Consequently, it is unlikely that a reduced respiration rate is solely responsible for this variability, but rather additional molecular mechanisms must also contribute to the development and clinical presentation of disease.”
Quote in the paperSubstantial claim- Rests on an assumption: Clinical phenotypes of mitochondrial disorders are extremely heterogeneous.
- Rests on an assumption: Pathogenic mtDNA mutations invariably result in a general defect in mitochondrial respiration that leads to a reduced ability to produce cellular ATP.
May combine two claims.
PremisecitationDNA delivered to yeast mitochondria via biolistic transformation incorporates only by homologous recombination, allowing controlled introduction of mutations at any desired position in yeast mtDNA genes.
“Most importantly, this can be achieved in a highly controlled fashion as DNA delivered to mitochondria via biolistic transformation can only incorporate into the mitochondrial genome by homologous recombination [160].”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [160] Bonnefoy, 2001, Genetic transformation of Saccharomyces cerevisiae mitochondria, Methods Cell Biol. source
Not checked in the free run.
May combine two claims.
PremisecitationYarrowia lipolytica possesses a vital proton-pumping NADH:ubiquinone oxidoreductase and has enabled important structural and functional analyses of mitochondrial complex I.
“However, the introduction over the past decade of an alternative model, the obligate aerobic yeast Yarrowia lipolytica, which possesses a vital proton-pumping NADH:ubiquinone oxidoreductase, has enabled important structural and functional analyses of mitochondrial complex I [168].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [168] Kerscher, 2004, Application of the yeast Yarrowia lipolytica as a model to analyse human pathogenic mutations in mitochondrial complex I (NADH:ubiquinone oxidoreductase), Biochim. Biophys. Acta source
Not checked in the free run.
May combine two claims.
PremisecitationThe 'Mito-mice' model harbours high levels of a single heteroplasmic mtDNA deletion and shows multiple symptoms including myopathy, cardiomyopathy, renal failure, anaemia, deafness, lactic acidosis, a mosaic pattern of COX deficiency, and a shortened life-span.
“Additional transmitochondrial mouse models, showing signs of mitochondrial dysfunction and capable of transmitting mtDNA mutations to subsequent generations, have since been established, including the 'Mito-mice' model that harbours high levels of a single heteroplasmic mtDNA deletion and shows a multitude of symptoms including myopathy, cardiomyopathy, renal failure, anaemia, deafness, lactic”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites [172] Inoue, 2000, Generation of mice with mitochondrial dysfunction by introducing mouse mtDNA carrying a deletion into zygotes, Nat. Genet. source
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- cites [173] Nakada, 2004, Accumulation of pathogenic DeltamtDNA induced deafness but not diabetic phenotypes in mito-mice, Biochem. Biophys. Res. Commun. source
Not checked in the free run.
May combine two claims.
PremisecitationS. cerevisiae are inherently homoplasmic, precluding threshold studies, but severity of yeast respiratory phenotypes can be modulated by studying mt-tRNA mutations in different nuclear contexts.
“Also, S. cerevisiae are inherently homoplasmic, thus precluding threshold studies, although it is possible to modulate the severity of yeast respiratory phenotypes by studying mt-tRNA mutations in different nuclear contexts [163,164].”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites [163] De Luca, 2006, Mutations in yeast mt tRNAs: specific and general suppression by nuclear encoded tRNA interactors, Gene source
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- cites [164] Montanari, 2008, Yeast as a model of human mitochondrial tRNA base substitutions: investigation of the molecular basis of respiratory defects, Rna source
Not checked in the free run.
May combine two claims.
PremisecitationThe progression of LHON seems to depend upon the responsible mutation with 71% of patients with the m.14484T>C mutation showing some recovery, compared to 25% with m.11778G>A.
“The progression of the disease seems to depend upon the responsible mutation with 71% of patients with the m.14484T N C mutation showing some recovery, compared to 25% with m.11778G N A [125].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [125] Riordan-Eva, 1995, The clinical features of Leber's hereditary optic neuropathy defined by the presence of a pathogenic mitochondrial DNA mutation, Brain source
Not checked in the free run.
May combine two claims.
PremisecitationCybrids harbouring the homoplasmic MT-TV m.1624C N T mutation lack the marked respiratory defect despite retaining a striking reduction in mt-tRNA Val steady-state levels, whereas the mutation caused a profound metabolic defect in skeletal and cardiac muscle in vivo.
“For example, cybrids harbouring the homoplasmic MT-TV m.1624C N T mutation, which caused a profound metabolic defect in skeletal and cardiac muscle, with low complex I and IV activities, and resulted in multiple neonatal deaths [159], were found to lack the marked respiratory defect despite retaining a striking reduction in mt-tRNA Val steady-state levels [159].”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [159] Rorbach, 2008, Overexpression of human mitochondrial valyl tRNA synthetase can partially restore levels of cognate mt-tRNAVal carrying the pathogenic C25U mutation, Nucleic Acids Res. source
Not checked in the free run.
May combine two claims.
PremisecitationIncreased ROS production has been described in neuronal NT2 cybrid cells containing m.3460G N A and m.11778G N A LHON mutations, in lymphocytes with m.8993T N C and m.8993T N G NARP mutations, and in chimeric m.3243A N G mice.
“Increased ROS production has been described in neuronal NT2 cybrid cells containing m.3460G N A and m.11778G N A LHON mutations [187], in lymphocytes with m.8993T N C and m.8993T N G NARP mutations [188] and more recently in the chimeric m.3243A N G mice mentioned previously [175].”
Quote in the paperNot a substantial claim0 of 3 sources checked- cites [187] Wong, 2002, Differentiation-specific effects of LHON mutations introduced into neuronal NT2 cells, Hum. Mol. Genet. source
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- cites [188] Baracca, 2007, Biochemical phenotypes associated with the mitochondrial ATP6 gene mutations at nt8993, Biochim. Biophys. Acta source
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- cites [175] Li, 2008, Increased ROS generation and SOD activity in heteroplasmic tissues of transmitochondrial mice with A3243G mitochondrial DNA mutation, Genet. Mol. Res. source
Not checked in the free run.
May combine two claims.
PremisecitationNormal levels of ROS were measured in POLG1 mutator mice, which eventually accumulate sufficient mtDNA mutations to cause severe OXPHOS deficiency.
“Conversely, normal levels of ROS were measured in the POLG1 mutator mice, which eventually accumulate sufficient mtDNA mutations to cause severe OXPHOS deficiency [189].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [189] Trifunovic, 2005, Somatic mtDNA mutations cause aging phenotypes without affecting reactive oxygen species production, Proc. Natl. Acad. Sci. U. S. A. source
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May combine two claims.
Premisenone givenBiochemical effects of mtDNA mutations are invariably characterised by lower cellular respiration, compromised RC complex activity, and reduced ATP synthesis.
“Biochemical effects of mtDNA mutations have been well described in all experimental systems and are invariably characterised by lower cellular respiration, compromised RC complex activity, and reduced ATP synthesis.”
Quote in the paperNot a substantial claimMay combine two claims.
Premisecitationm.5874T N C and m.5877C N T transitions decrease aminoacylation.
“and the mt-tRNA Tyr m.5874T N C and m.5877C N T transitions [204].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [204] Bonnefond, 2008, Decreased aminoacylation in pathology-related mutants of mitochondrial tRNATyr is associated with structural perturbations in tRNA architecture, RNA source
Not checked in the free run.
May combine two claims.
PremisecitationNo increase in programmed cell death was identified in POLG1 mutator mice, contrary to double TFAM knockout mice where substantial apoptosis occurred at embryonic day 9.5.
“Furthermore, no increase in programmed cell death was identified in this mouse model, contrary to a double TFAM knockout mouse model in which substantial apoptosis occurred at embryonic day 9.5 [179,190].”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites [179] Wang, 1999, Dilated cardiomyopathy and atrioventricular conduction blocks induced by heart-specific inactivation of mitochondrial DNA gene expression, Nat. Genet. source
Not checked in the free run.
- cites [190] Wang, 2001, Increased in vivo apoptosis in cells lacking mitochondrial DNA gene expression, Proc. Natl. Acad. Sci. U. S. A. source
Not checked in the free run.
May combine two claims.
PremisecitationPNAs colocalised to mitochondria in intact cells but were not able to cross the inner mitochondrial membrane.
“However, although PNAs colocalised to mitochondria in intact cells, they were not able to cross the IMM.”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [234] Taylor, 1997, Selective inhibition of mutant human mitochondrial DNA replication in vitro by peptide nucleic acids, Nat. Genet. source
Not checked in the free run.
May combine two claims.
PremisecitationShared transcriptional consequences of mitochondrial dysfunction include inhibition of ubiquitin-mediated protein degradation and mitochondrial/nuclear ribosomal protein synthesis, and activation of the unfolded protein response.
“Other shared transcriptional consequences of mitochondrial dysfunction include inhibition of both ubiquitin-mediated protein degradation and mitochondrial and nuclear ribosomal protein synthesis [214,215], as well as activation of the unfolded protein response [215,216].”
Quote in the paperNot a substantial claim0 of 3 sources checked- cites [214] Jahangir Tafrechi, 2005, Distinct nuclear gene expression profiles in cells with mtDNA depletion and homoplasmic A3243G mutation, Mutat. Res. source
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- cites [215] Alemi, 2007, Mitochondrial DNA deletions inhibit proteasomal activity and stimulate an autophagic transcript, Free Radic. Biol. Med. source
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- cites [216] Cortopassi, 2006, Mitochondrial disease activates transcripts of the unfolded protein response and cell cycle and inhibits vesicular secretion and oligodendrocyte-specific transcripts, Mitochondrion source
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Premisecitationm.9205delTA eliminates the MT-ATP6 gene stop codon, places MT-CO3 immediately in frame, and causes a marked decrease in RNA14 steady-state levels.
“Moreover, the nature of the mtDNA mutations, in particular the m.9205delTA deletion, which eliminates the MT-ATP6 gene stop codon, placing MT-CO3 immediately in frame, and causes a marked decrease in RNA14 (MT-ATP8 and -6-encoding bicistronic transcript) steady-state levels [81]”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [81] Temperley, 2003, Investigation of a pathogenic mtDNA microdeletion reveals a translation-dependent deadenylation decay pathway in human mitochondria, Hum. Mol. Genet. source
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May combine two claims.
PremisecitationMuscle conditioning enhanced ATP levels, delayed disease onset, and increased life expectancy in COX10 knockout mice.
“Muscle conditioning enhanced ATP levels, delayed disease onset, and increased life expectancy in these mice.”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [231] Wenz, 2009, Endurance exercise is protective for mice with mitochondrial myopathy, J. Appl. Physiol. source
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PremisecitationEndurance training for up to 14 weeks improves OXPHOS function, but does not shift mutated mtDNA levels in muscle, and cessation causes loss of physiological adaptations.
“Well tolerated and safe, endurance training for up to 14 weeks has been found to improve OXPHOS function, although no concomitant shift in mutated mtDNA levels in muscle has been observed and cessation in training does cause a loss of the physiological adaptations [228][229][230].”
Quote in the paperSubstantial claim0 of 3 sources checked- cites [228] Taivassalo, 2005, Exercise and training in mitochondrial myopathies, Med. Sci. Sports Exerc. source
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- cites [229] Jeppesen, 2006, Aerobic training is safe and improves exercise capacity in patients with mitochondrial myopathy, Brain source
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- cites [230] Taivassalo, 2006, Endurance training and detraining in mitochondrial myopathies due to single large-scale mtDNA deletions, Brain source
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May combine two claims.
PremisecitationImported tRNA Lys molecules are correctly aminoacylated, participate in mitochondrial translation, and partially rescue mitochondrial functions.
“Imported tRNA Lys molecules are correctly aminoacylated, able to participate in mitochondrial translation, and partially rescue mitochondrial functions [242].”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [242] Kolesnikova, 2004, Nuclear DNA-encoded tRNAs targeted into mitochondria can rescue a mitochondrial DNA mutation associated with the MERRF syndrome in cultured human cells, Hum. Mol. Genet. source
Not checked in the free run.
Probably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationMitoCarta consists of 1098 identified proteins.
“The most recent mammalian mitochondrial compendium (MitoCarta) consists of 1098 identified proteins [209].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [209] Pagliarini, 2008, A mitochondrial protein compendium elucidates complex I disease biology, Cell source
Not checked in the free run.
May combine two claims.
PremisecitationOverexpression of valyl and leucyl synthetases increases steady-state levels of mutant mt-tRNA Val and mt-tRNA Leu(UUR), respectively.
“Furthermore, two recent studies have demonstrated an increase in mutant mt-tRNA Val [159] and mt-tRNA Leu(UUR) [166] steady-state levels following overexpression of the valyl and leucyl synthetases, respectively.”
Quote in the paperSubstantial claim0 of 2 sources checked- cites [159] Rorbach, 2008, Overexpression of human mitochondrial valyl tRNA synthetase can partially restore levels of cognate mt-tRNAVal carrying the pathogenic C25U mutation, Nucleic Acids Res. source
Not checked in the free run.
- cites [166] Park, 2008, Overexpressed mitochondrial leucyl-tRNA synthetase suppresses the A3243G mutation in the mitochondrial tRNA(Leu(UUR)) gene, Rna source
Not checked in the free run.
May combine two claims.
PremisecitationTwelve-week resistance training in patients with single, large-scale mtDNA deletions increases satellite cell number and improves muscular strength and oxidative capacity, evidenced by decreased COX-negative fibres.
“Twelve-week resistance training studies in patients with single, large-scale mtDNA deletions have been demonstrated to increase satellite cell number with concomitant improvements in muscular strength and oxidative capacity evidenced by a decrease in the proportion of COX-negative fibres [233].”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [233] Murphy, 2008, Resistance training in patients with single, large-scale deletions of mitochondrial DNA, Brain source
Not checked in the free run.
May combine two claims.
PremisecitationAOX was well tolerated and transfectants displayed remarkable cyanide resistance to mitochondrial metabolite oxidation.
“Indeed, AOX was well tolerated and transfectants displayed remarkable levels of cyanide resistance to mitochondrial metabolite oxidation.”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [247] Hakkaart, 2006, Allotopic expression of a mitochondrial alternative oxidase confers cyanide resistance to human cell respiration, EMBO Rep. source
Not checked in the free run.
May combine two claims.
PremisecitationIn heteroplasmic mice, heteroplasmy levels are almost identical between the ooplasm and polar body of the mature oocyte and also between individual blastomeres.
“However, studies in heteroplasmic mice have demonstrated almost identical levels of heteroplasmy between the ooplasm and polar body of the mature oocyte and also between individual blastomeres [250].”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [250] Dean, 2003, Prospect of preimplantation genetic diagnosis for heritable mitochondrial DNA diseases, Mol. Hum. Reprod. source
Not checked in the free run.
Probably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationPronuclear transfer is presently being investigated in abnormally fertilised human embryos.
“An alternative approach involving pronuclear transfer, the transfer of the pronuclei from a fertilised zygote of a mother with mtDNA disease to an enucleated zygote from a healthy donor female, is presently being investigated in abnormally fertilised human embryos (Turnbull et al., unpublished data).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Turnbull et al., unpublished data
Not checked in the free run.
May combine two claims.
PremisecitationSpindle-chromosome complex transfer from a mature primate oocyte to an enucleated primate egg successfully produced healthy offspring, in which spindle donor mtDNA was not detected.
“Recently, spindle-chromosome complex transfer from a mature primate oocyte to an enucleated primate egg successfully produced healthy offspring, in which, importantly, spindle donor mtDNA was not detected [252].”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [252] Tachibana, 2009, Mitochondrial gene replacement in primate offspring and embryonic stem cells, Nature source
Not checked in the free run.
May combine two claims.
PremisecitationAOX was successfully transfected and targeted to the inner mitochondrial membrane in human cultured cells.
“Furthermore, an encouraging strategy for the potential rescue of mitochondrial COX defects may soon be possible following the successful transfection and IMM targeting in human cultured cells of the sea squirt Ciona intestinalis cyanide-insensitive alternative oxidase (AOX) [247].”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [247] Hakkaart, 2006, Allotopic expression of a mitochondrial alternative oxidase confers cyanide resistance to human cell respiration, EMBO Rep. source
Not checked in the free run.
May combine two claims.
PremisecitationXenotopic expression of CrATP6 in human cybrids with m.8993T N G resulted in moderately improved ATP production and fully recovered cellular viability.
“Similarly, xenotopic expression of the green alga Chlamydomonas reinhardtii ATPase 6 (CrATP6) in human cybrid cells harbouring the m.8993T N G mutation resulted in moderately improved ATP production whilst cellular viability was fully recovered [246].”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [246] Ojaimi, 2002, An algal nucleus-encoded subunit of mitochondrial ATP synthase rescues a defect in the analogous human mitochondrial-encoded subunit, Mol. Biol. Cell source
Not checked in the free run.
The paper relies on this without support.
In heteroplasmy, the ratio of wild-type to mutant mtDNA determines the onset of clinical symptoms.
“In the presence of heteroplasmy, the ratio of wild-type to mutant mtDNA determines the onset of clinical symptoms.”
The paper relies on this without support.
A minimum critical proportion of mutated mtDNAs is necessary before biochemical defects and tissue dysfunction become apparent.
“A minimum critical proportion of mutated mtDNAs is necessary before biochemical defects and tissue dysfunction become apparent.”
The paper relies on this without support.
The threshold level varies for each mutation and differs amongst tissues, being lower in tissues highly dependent on OXPHOS metabolism than in tissues that can rely on anaerobic glycolysis.
“This threshold level varies for each mutation and differs amongst tissues, being lower in tissues highly dependent on OXPHOS metabolism than in tissues that can rely on anaerobic glycolysis.”
The paper relies on this without support.
Typically, the threshold value is in the range of 60%-90% mutant to wild-type mtDNA.
“Typically, the threshold value is in the range of 60%-90% mutant to wild-type mtDNA.”
The paper relies on this without support.
During mitosis, mitochondria are randomly segregated, and in heteroplasmic cells, the proportion of mutant mtDNA in the daughter cells can shift.
“During mitosis, mitochondria are randomly segregated, and in heteroplasmic cells, the proportion of mutant mtDNA in the daughter cells can thus shift.”
The paper relies on this without support.
If the mutant load exceeds the pathogenic threshold for that tissue, clinical expression of the disease can occur.
“Should the mutant load exceed the pathogenic threshold for that tissue, clinical expression of the disease can occur.”
The paper relies on this without support.
Mutant mtDNA may be lost, particularly in fast-dividing tissues.
“Conversely, mutant mtDNA may be lost, particularly in fast-dividing tissues.”
The paper relies on this without support.
MtDNA point mutations are usually maternally inherited.
“MtDNA point mutations are usually maternally inherited.”
The paper relies on this without support.
More than half of disease-related point mutations reported are located within mt-tRNA genes.
“However, more than half of disease-related point mutations reported are located within mt-tRNA genes.”
The paper relies on this without support.
Point mutations in mitochondrial protein-coding genes specifically affect the function of the RC complex to which the corresponding protein belongs, whereas mt-tRNA mutations may impair overall mitochondrial translation by reducing the availability of functional mt-tRNAs.
“Phenotypically, point mutations in mitochondrial protein-coding genes specifically affect the function of the RC complex to which the corresponding protein belongs, whereas mt-tRNA mutations may impair overall mitochondrial translation by reducing the availability of functional mt-tRNAs.”
The paper relies on this without support.
Point mutations are mostly heteroplasmic, displaying considerable clinical heterogeneity, and are considered highly recessive.
“Point mutations are mostly heteroplasmic, displaying considerable clinical heterogeneity, and are considered highly recessive.”
The paper relies on this without support.
LHON is usually due to a homoplasmic mtDNA mutation and all maternal offspring will inherit the mutation; however, whilst 50% of males will be affected, only 10% of females will develop visual loss.
“LHON is usually due to a homoplasmic mtDNA mutation and all maternal offspring will inherit the mutation; however, whilst 50% of males will be affected, only 10% of females will develop visual loss.”
The paper relies on this without support.
The clinical syndromes associated with mtDNA mutations are extremely variable and patients can present at any stage in life.
“The clinical syndromes associated with mtDNA mutations are extremely variable and patients can present at any stage in life.”
The paper relies on this without support.
On the whole, the age of onset reflects the level of mutation and the severity of the biochemical defect, but other factors (presumably nuclear genetic or environmental) also affect the expression of disease.
“On the whole, the age of onset reflects the level of mutation and the severity of the biochemical defect, but other factors (presumably nuclear genetic or environmental) also effect the expression of disease.”
The paper relies on this without support.
Many, but not all, patients with mtDNA disease show histological and histochemical changes in affected tissue, indicative of RC dysfunction.
“Many, but not all, patients with mtDNA disease show histological and histochemical changes in affected tissue, indicative of RC dysfunction.”
The paper relies on this without support.
Some mutations—mtDNA rearrangements and certain mtDNA point mutations—are only present in clinically affected tissues, necessitating the work-up on postmitotic (muscle) DNA samples.
“Some mutations-mtDNA rearrangements and certain mtDNA point mutations-are only present in clinically affected tissues, necessitating the work-up on postmitotic (muscle) DNA samples.”
The paper relies on this without support.
Due to its small size, screening the entire mitochondrial genome can be undertaken relatively easily to identify rare or novel mtDNA mutations in patients with suspected mtDNA disease.
“Due to its small size, screening the entire mitochondrial genome can be undertaken relatively easily to identify rare or novel mtDNA mutations in patients with suspected mtDNA disease.”
The paper relies on this without support.
Clinical phenotypes of mitochondrial disorders are extremely heterogeneous.
“The clinical phenotypes of mitochondrial disorders are however extremely heterogeneous.”
The paper relies on this without support.
Engineering mtDNA is problematic due to its polyploidy, inaccessibility within a double-membraned organelle, and apparent lack of, or minimal, recombination, which have prevented the successful transfection of autonomously replicating foreign DNA plasmids or modified mtDNA into mitochondria to date.
“Firstly, engineering mtDNA is problematic due to its polyploidy, inaccessibility within a double-membraned organelle, and apparent lack of, or minimal, recombination, which have prevented the successful transfection of autonomously replicating foreign DNA plasmids or modified mtDNA into mitochondria to date.”
The paper relies on this without support.
Most cybrid models are generated using aneuploid tumour cells.
“Most cybrid models are generated using aneuploid tumour cells.”
The authors state this as an assumption.
Aneuploidy can affect the stoichiometry of nuclear- and mitochondrial-encoded RC subunits, thus interfering with genotype-phenotype relationships.
“however, it is reasonable to assume that it can affect the stoichiometry of nuclear-and mitochondrial-encoded RC subunits, thus interfering with genotype-phenotype relationships.”
The paper relies on this without support.
Tumour cells are largely glycolysis-dependent, relying little on OXPHOS for generating the majority of their energy requirements.
“On a similar note, tumour cells are largely glycolysis-dependent, relying little on OXPHOS for generating the majority of their energy requirements.”
The paper relies on this without support.
mtDNA disorders typically occur in highly aerobic cells.
“In contrast, mtDNA disorders typically occur in highly aerobic cells.”
The paper relies on this without support.
S. cerevisiae is currently the only known organism in which mitochondrial genetic transformation is possible.
“Saccharomyces cerevisiae is currently the only known organism in which mitochondrial genetic transformation is possible.”
The paper relies on this without support.
S. cerevisiae can survive in the complete absence of functional mtDNA.
“Furthermore, in view of the ability of S. cerevisiae to survive in the complete absence of functional mtDNA, the study of very severe mitochondrial defects is possible.”
The paper relies on this without support.
Not all human mt-tRNAs share strong homology with yeast mt-tRNAs.
“Not all human mt-tRNAs share strong homology with yeast mt-tRNAs.”
The paper relies on this without support.
Fermentative yeast such as S. cerevisiae lack complex I.
“Finally, fermentative yeast such as S. cerevisiae lack complex I.”
The paper relies on this without support.
It is not possible to directly manipulate the mouse mitochondrial genome.
“As it is not possible to directly manipulate their mitochondrial genome, researchers have been forced to adopt more ingenious and indirect ways of engineering mouse mtDNA.”
The paper relies on this without support.
No effective treatment options are currently available for patients with mitochondrial dysfunction, except in rare cases where surgery or transplant may be indicated.
“Despite considerable advances over the last decade in our understanding of mitochondrial genetics and function and the pathogenesis of mtDNA diseases, no effective treatment options are currently available for patients with mitochondrial dysfunction, except in rare cases where surgery or transplant may be indicated.”
The paper relies on this without support.
Satellite cells proliferate in response to damage caused by concentric or eccentric muscular contractions.
“Undifferentiated myogenic cells, satellite cells, are known to proliferate in response to damage caused by concentric (shortening) or eccentric (lengthening) muscular contractions.”
The paper relies on this without support.
Pathogenic mtDNA mutations invariably result in a general defect in mitochondrial respiration that leads to a reduced ability to produce cellular ATP.
“Pathogenic mtDNA mutations invariably result in a general defect in mitochondrial respiration that leads to a reduced ability to produce cellular ATP.”
The paper relies on this without support.
No effective therapies or cures are presently available for patients with mtDNA disease.
“Disappointingly, no effective therapies or cures are presently available for patients with mtDNA disease.”
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
More recently, estimates have increased the mutation rate from 10- to 17-fold higher in mtDNA than nuclear genomic DNA (nDNA).
“More recently, estimates have increased the mutation rate from 10- to 17-fold higher in mtDNA than nuclear genomic (nDNA) (Tuppen et al., 2010).”
From Role of the mitochondrial DNA replication machinery in mitochondrial DNA mutagenesis, aging and age-related diseases (2017) · cites this paper as Tuppen et al., 2010
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
Each contradiction between two passages listed here was confirmed by an independent check.
LHON mutation is given in opposite directions
MinorThe LHON section identifies the mutation at position 11778 as G to A, but later in the same paragraph calls it A to G.
“There are three primary LHON mtDNA mutations (m.11778G N A, m.3460G N A, and m.14484T N C)”
“Whilst the majority of patients with m.11778A N G who have symptoms develop LHON”
Figure 1's list of 13 polypeptides omits ND5 and ND6
MinorThe figure caption presents its list as the 13 mtDNA-encoded respiratory-chain polypeptides, but the listed names account for only 11. Elsewhere the paper identifies MT-ND6 as an mtDNA gene, which is absent from that list; it also discusses MT-ND5.
“13 essential RC polypeptides: ND1-ND4 and ND4L, subunits of complex I (green), CYTB, a subunit of complex III (purple), COI-COIII, catalytic subunits of complex IV (yellow), and ATP6 and ATP8, subunits of complex V (blue).”
“Two heteroplasmic point mutations introduced in MT-ND6 (m.13885insC) and MT-CO1 (m.6589T N C) resulted in myopathy and cardiomyopathy [174]”
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“In-depth reviews on mtDNA transcription are available [36,37].”
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Pathogenic Mitochondrial DNA Mutations Are Common in the General Population
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“However, increasing reports on the relationship of mitochondrial function to the cell cycle [22–24] suggest a connection between mtDNA replication and the cell cycle may well actually exist.”
BackgroundMitochondrial DNA mutations in disease and aging
Wallace, D. C. (2010) · Environmental and Molecular Mutagenesis · doi:10.1002/em.20586 · Cited by 622 · see citing works
Progressive parkinsonism in mice with respiratory-chain-deficient dopamine neurons
Ekstrand, M. I., Terzioglu, M., Galter, D., Zhu, S., Hofstetter, C., Lindqvist, E., Thams, S., Bergstrand, A., Hansson, F. S., Trifunovic, A., et al. (2007) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0605208103 · Cited by 605 · cited 1× · see citing works
“TFAM [176–182], POLG (‘Mutator’ model) [183], and PEO1 (Twinkle; ‘Deletor’ model) [184].”
Jenuth, J. P., Peterson, A. C., Fu, K., & Shoubridge, E. A. (1996) · Nature Genetics · doi:10.1038/ng1096-146 · Cited by 591 · cited 2× · see citing works
“A prevalent hypothesis is that the bottleneck occurs during embryonic development, driven by a marked reduction in mtDNA copy number in the germ line [73,74].”
BackgroundPrevalence of mitochondrial DNA disease in adults
Schaefer, A. M., McFarland, R., Blakely, E. L., He, L., Whittaker, R. G., Taylor, R. W., Chinnery, P. F., & Turnbull, D. M. (2007) · Annals of Neurology · doi:10.1002/ana.21217 · Cited by 581 · cited 1× · see citing works
“Estimates from the North East of England suggest that as many as 1 in 10,000 people have clinically manifesting mtDNA disease with a further 1 in 6000 at risk [58].”
BackgroundSelf-citationA Direct Repeat Is a Hotspot for Large-Scale Deletion of Human Mitochondrial DNA
Schon, E. A., Rizzuto, R., Moraes, C. T., Nakase, H., Zeviani, M., & DiMauro, S. (1989) · Science · doi:10.1126/science.2711184 · Cited by 569 · see citing works
Mitochondrial gene replacement in primate offspring and embryonic stem cells
Tachibana, M., Sparman, M. L., Sritanaudomchai, H., Ma, H., Clepper, L., Woodward, J., Li, Y., Ramsey, C. M., Kolotushkina, O., & Mitalipov, S. M. (2009) · Nature · doi:10.1038/nature08368 · Cited by 565 · cited 1× · see citing works
“Recently, spindle – chromosome complex transfer from a mature primate oocyte to an enucleated primate egg successfully produced healthy offspring, in which, importantly, spindle donor mtDNA was not detected [252].”
BackgroundSomatic mtDNA mutations cause aging phenotypes without affecting reactive oxygen species production
Trifunovic, A., Hansson, A., Wredenberg, A., Rovio, A. T., Dufour, E., Khvorostov, I., Spelbrink, J. N., Wibom, R., Jacobs, H. T., & Larsson, N.-G. (2005) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0508886102 · Cited by 555 · see citing works
Emerging functions of mammalian mitochondrial fusion and fission
Chen, H., & Chan, D. C. (2005) · Human Molecular Genetics · doi:10.1093/hmg/ddi270 · Cited by 538 · cited 1× · see citing works
“Originally believed to be discrete entities with their own individual ‘naked’ and free-floating genetic identity, mitochondria are now recognised to be dynamic organelles that continuouslymove, fuse, and divide [13].”
BackgroundMITOMAP: a human mitochondrial genome database
Kogelnik, A. M. (1996) · Nucleic Acids Research · doi:10.1093/nar/24.1.177 · Cited by 524 · see citing works
Leber hereditary optic neuropathy
Man, P. Y. W., Turnbull, D. M., & Chinnery, P. F. (2002) · Journal of Medical Genetics · doi:10.1136/jmg.39.3.162 · Cited by 520 · cited 1× · see citing works
“14484TNC), which in total are present in at least 95% of LHON cases [56,124].”
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“Whilst most researchers consider replication to be the most likely mechanism of deletion formation [97], Krishnan et al. [98] recently proposed that mtDNA deletions arise during the repair of damaged mtDNA.”
BackgroundCree, L. M., Samuels, D. C., Lopes, S. M. C. D. S., Rajasimha, H. K., Wonnapinij, P., Mann, J. R., Dahl, H. M., & Chinnery, P. F. (2008) · Nature Genetics · doi:10.1038/ng.2007.63 · Cited by 502 · cited 1× · see citing works
“A prevalent hypothesis is that the bottleneck occurs during embryonic development, driven by a marked reduction in mtDNA copy number in the germ line [73,74].”
BackgroundTreatment for mitochondrial disorders
Pfeffer, G., Majamaa, K., Turnbull, D. M., Thorburn, D. R., & Chinnery, P. F. (2012) · Cochrane Database of Systematic Reviews · doi:10.1002/14651858.cd004426.pub3 · Cited by 501 · cited 1× · see citing works
“005 administration of various pharmacological and biochemical agents, including vitamins, cofactors, metabolites, and electron acceptors, to correct or bypass the underlying RC defect has met with limited success (reviewed in [227]).”
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“11778GNA [125].”
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A mouse model of mitochondrial disease reveals germline selection against severe mtDNA mutations
Fan, W., Waymire, K. G., Narula, N., Li, P., Rocher, C., Coskun, P. E., Vannan, M. A., Narula, J., MacGregor, G. R., & Wallace, D. C. (2008) · Science · doi:10.1126/science.1147786 · Cited by 466 · cited 1× · see citing works
“Two heteroplasmic point mutations introduced in MT-ND6 (m.13885insC) and MT-CO1 (m.6589T N C) resulted in myopathy and cardiomyopathy [174], and the injection of m.3243A N G mutated mitochondria into C57BL/6J mouse zygotes led to respiratory dysfunction and enhanced ROS production in heteroplasmic…”
BackgroundThe mitochondrial DNA genetic bottleneck results from replication of a subpopulation of genomes
Wai, T., Teoli, D., & Shoubridge, E. A. (2008) · Nature Genetics · doi:10.1038/ng.258 · Cited by 462 · cited 1× · see citing works
“Finally, a third alternate view on the genetic bottleneck has recently been proposed [76].”
BackgroundPearson's marrow–pancreas syndrome. A multisystem mitochondrial disorder in infancy
Rötig, A., Cormier, V, Blanche, S., Bonnefont, J. P., Ledeist, F., Romero, N., Schmitz, J., Rustin, P., Fischer, A., & Saudubray, J. M. (1990) · Journal of Clinical Investigation · doi:10.1172/jci114881 · Cited by 461 · see citing works
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“Theymainly occur between the origins of replication, OH and OL, and are typically flanked by short direct repeats [94,95].”
BackgroundWang, J., Wilhelmsson, H., Graff, C., Li, H., Oldfors, A., Rustin, P., Brüning, J. C., Kahn, C. R., Clayton, D. A., Barsh, G. S., et al. (1999) · Nature Genetics · doi:10.1038/5089 · Cited by 435 · cited 2× · see citing works
“5 [179,190].”
Silva, J. P., Köhler, M., Graff, C., Oldfors, A., Magnuson, M. A., Berggren, P.-O., & Larsson, N.-G. (2000) · Nature Genetics · doi:10.1038/81649 · Cited by 433 · cited 1× · see citing works
“TFAM [176–182], POLG (‘Mutator’ model) [183], and PEO1 (Twinkle; ‘Deletor’ model) [184].”
Kaufman, B. A., Durisic, N., Mativetsky, J. M., Costantino, S., Hancock, M. A., Grütter, P., & Shoubridge, E. A. (2007) · Molecular Biology of the Cell · doi:10.1091/mbc.e07-05-0404 · Cited by 431 · see citing works
The Layered Structure of Human Mitochondrial DNA Nucleoids
Bogenhagen, D. F., Rousseau, D. L., & Burke, S. (2007) · Journal of Biological Chemistry · doi:10.1074/jbc.m708444200 · Cited by 426 · cited 1× · see citing works
“Key proteins involved in mtDNA replication, maintenance, repair, and recombination, such asmitochondrial single-stranded binding protein (mt-SSB), mitochondrial polymerase γ (POLG), and mitochondrial transcription factor A (TFAM), are just some of the major constituent proteins associated with these structures [15–17].”
BackgroundCoupled Leading- and Lagging-Strand Synthesis of Mammalian Mitochondrial DNA
Holt, I. J., Lorimer, H. E., & Jacobs, H. T. (2000) · Cell · doi:10.1016/s0092-8674(00)80688-1 · Cited by 418 · cited 2× · see citing works
“A second more conventional replication method has been suggested in which coupled leading-lagging strand DNA replication, also initiating at O H , is coordinated [26,27].”
BackgroundMethodTissue-specific selection for different mtDNA genotypes in heteroplasmic mice
Jenuth, J. P., Peterson, A. C., & Shoubridge, E. A. (1997) · Nature Genetics · doi:10.1038/ng0597-93 · Cited by 415 · cited 2× · see citing works
“The first heteroplasmicmicewere generated by cytoplasmic fusion of two normal mouse strains carrying distinct haplotypes [74,169].”
BackgroundMitochondrial DNA mutations in human disease
DiMauro, S., & Schon, E. A. (2001) · American Journal of Medical Genetics · doi:10.1002/ajmg.1392 · Cited by 414 · see citing works
Reconstitution of a minimal mtDNA replisome in vitro
Korhonen, J. A., Pham, X. H., Pellegrini, M., & Falkenberg, M. (2004) · The EMBO Journal · doi:10.1038/sj.emboj.7600257 · Cited by 404 · cited 1× · see citing works
“Core components of the mitochondrial replisome include POLG, consisting of a catalytic subunit with 5 ′– 3 ′ exonuclease activity (PolgA) and a processivity subunit (PolgB), Twinkle, with 5 ′– 3 ′ DNA helicase activity, and mt-SSB [30].”
BackgroundInoue, K., Nakada, K., Ogura, A., Isobe, K., Goto, Y., Nonaka, I., & Hayashi, J.-I. (2000) · Nature Genetics · doi:10.1038/82826 · Cited by 393 · cited 1× · see citing works
“ness, lactic acidosis, a mosaic pattern of COX deficiency, and a shortened life-span [172,173].”
BackgroundBiochemical Assays of Respiratory Chain Complex Activity
Kirby, D. M., Thorburn, D. R., Turnbull, D. M., & Taylor, R. W. (2007) · Methods in cell biology · doi:10.1016/s0091-679x(06)80004-x · Cited by 383 · cited 1× · see citing works
“…of individual RC enzyme complex activities in mitochondrial fractions or enriched homogenates prepared from fresh or frozen tissue samples [131]; some labs also investigate functional testing of intact organelles to include measurements of mitochondrial substrate oxidation, oxygen…”
BackgroundSelf-citationWhat causes mitochondrial DNA deletions in human cells?
Krishnan, K. J., Reeve, A. K., Samuels, D. C., Chinnery, P. F., Blackwood, J. K., Taylor, R. W., Wanrooij, S., Spelbrink, J. N., Lightowlers, R. N., & Turnbull, D. M. (2008) · Nature Genetics · doi:10.1038/ng.f.94 · Cited by 380 · see citing works
Self-citationLeigh and Leigh-Like Syndrome in Children and Adults
Finsterer, J. (2008) · Pediatric Neurology · doi:10.1016/j.pediatrneurol.2008.07.013 · Cited by 377 · cited 1× · see citing works
“Leigh syndrome is due to severe failure of oxidative metabolism and can be due to a variety of different genetic defects affecting either the mitochondrial (e.g., m.8993T N C/G, m.10158T N C, m.10191T N C) or nuclear genome (e.g., SURF1 gene) [105].”
BackgroundDeletions of mitochondrial DNA in Kearns‐Sayre syndrome
Zeviani, M., Moraes, C. T., DiMauro, S., Nakase, H., Bonilla, E., Schon, E. A., & Rowland, L. P. (1988) · Neurology · doi:10.1212/wnl.38.8.1339 · Cited by 370 · cited 1× · see citing works
“The amount and tissue distribution of the deleted mtDNA are the most important factors in determining clinical symptoms, and not, as one might expect, the size and location of the deletions [99–101].”
BackgroundDistinct mitochondrial retrograde signals control the G1-S cell cycle checkpoint
Owusu-Ansah, E., Yavari, A., Mandal, S., & Banerjee, U. K. (2008) · Nature Genetics · doi:10.1038/ng.2007.50 · Cited by 364 · cited 1× · see citing works
“However, increasing reports on the relationship of mitochondrial function to the cell cycle [22–24] suggest a connection between mtDNA replication and the cell cycle may well actually exist.”
BackgroundThe in-depth evaluation of suspected mitochondrial disease
Haas, R., Parikh, S., Falk, M. J., Saneto, R. P., Wolf, N. I., Darín, N., Wong, L.-J. C., Cohen, B. H., & Naviaux, R. K. (2008) · Molecular Genetics and Metabolism · doi:10.1016/j.ymgme.2007.11.018 · Cited by 363 · cited 1× · see citing works
“Diagnostic algorithms and protocols are available for the molecular investigation of patients with suspected mtDNA disease [130,133,134].”
BackgroundThe mitochondrial bottleneck occurs without reduction of mtDNA content in female mouse germ cells
Cao, L., Shitara, H., Horii, T., Nagao, Y., Imai, H., Abe, K., Hara, T., Hayashi, J., & Yonekawa, H. (2007) · Nature Genetics · doi:10.1038/ng1970 · Cited by 346 · cited 1× · see citing works
“Paradoxically, it has also been suggested that the bottleneck occurs without reduction of germ line mtDNA copy number, but is a result of the preferential replication of a subgroup of mtDNAs during oogenesis [75].”
BackgroundLength-independent separation of DNA restriction fragments in two-dimensional gel electrophoresis
Fischer, S. G., & Lerman, L. S. (1979) · Cell · doi:10.1016/0092-8674(79)90200-9 · Cited by 342 · cited 1× · see citing works
“Denaturing gradient gel electrophoresis (DGGE) [139,140] and denaturing high-performance liquid chromatography (dHPLC) [141,142] have been available for some years, whilst emerging technologies include resequencing microarrays such as the Affymetrix MitoChip 2.0 [143,144].”
MethodInfluentialTyynismaa, H., Mjosund, K. P., Wanrooij, S., Lappalainen, I., Ylikallio, E., Jalanko, A., Spelbrink, J. N., Paetau, A., & Suomalainen, A. (2005) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0505551102 · Cited by 342 · cited 1× · see citing works
“Alternative and more successful approaches to developing mouse models of mitochondrial disease involve manipulating the nuclear genes that regulate mtDNA maintenance and replication, such as TFAM [176 – 182], POLG ( ‘ Mutator ’ model) [183], and PEO1 (Twinkle; ‘ Deletor ’ model) [184].”
BackgroundRandom intracellular drift explains the clonal expansion of mitochondrial DNA mutations with age
Elson, J. L., Samuels, D. C., Turnbull, D. M., & Chinnery, P. F. (2001) · The American Journal of Human Genetics · doi:10.1086/318801 · Cited by 340 · cited 1× · see citing works
“This expansion is thought to be a result of random genetic drift, dependent on relaxed replication of the mitochondrial genome [66].”
BackgroundSelf-citationGoto, Y., Nonaka, I., & Horai, S. (1991) · Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease · doi:10.1016/0925-4439(91)90042-8 · Cited by 325 · cited 1× · see citing works
“Other mutations in this mt-tRNA gene (e.g., m.3271T N C) [111], other mt-tRNA genes (e.g., m.1642G N A, MT-TV gene) [112] and protein-encoding genes (e.g., m.9957T N C in the MT-CO3 gene [113], several MT-ND5 mutations (m.12770A N G, m.13045A N C, m.13513G N A and m.13514A N G) [114 – 117] and…”
BackgroundProgressive Increase of the Mutated Mitochondrial DNA Fraction in Kearns-Sayre Syndrome
Larsson, N.-G., Holme, E., Kristiansson, B., Oldfors, A., & Tulinius, M. (1990) · Pediatric Research · doi:10.1203/00006450-199008000-00011 · Cited by 324 · cited 1× · see citing works
“Clonal expansion refers to the preferential ampli fi cation of mtDNA mutations to a high level in post-mitotic tissues [64,65].”
BackgroundBogenhagen, D. F., & Clayton, D. A. (1977) · Cell · doi:10.1016/0092-8674(77)90286-0 · Cited by 312 · see citing works
Metodiev, M. D., Lesko, N., Park, C. B., Cámara, Y., Shi, Y., Wibom, R., Hultenby, K. R., Gustafsson, C. M., & Larsson, N. (2009) · Cell Metabolism · doi:10.1016/j.cmet.2009.03.001 · Cited by 310 · cited 1× · see citing works
“…transcription machinery consists of a limited number of nuclear-encoded proteins: the dedicated mitochondrial RNA polymerase (POLRMT), the transcription activator TFAM, the transcription factor TFB2M (but probably not TFB1M as previously thought [33,34]), and the termination factor mTERF [35].”
BackgroundWang, Y., & Bogenhagen, D. F. (2006) · Journal of Biological Chemistry · doi:10.1074/jbc.m604501200 · Cited by 303 · cited 1× · see citing works
“Multiple copies (∼6–10) of mtDNA are organised in stable protein–DNAmacrocomplexes, termed nucleoids, which are primarily IMMassociated [14,15] andmay be exchanged betweenmitochondria.”
BackgroundIncreased mitochondrial mass in mitochondrial myopathy mice
Wredenberg, A., Wibom, R., Wilhelmsson, H., Graff, C., Wiener, H. H., Burden, S. J., Oldfors, A., Westerblad, H., & Larsson, N.-G. (2002) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.232591499 · Cited by 302 · cited 1× · see citing works
“TFAM [176–182], POLG (‘Mutator’ model) [183], and PEO1 (Twinkle; ‘Deletor’ model) [184].”
Quantitative Proteomic Comparison of Rat Mitochondria from Muscle, Heart, and Liver *S
Forner, F., Foster, L., Campanaro, S., Valle, G., & Mann, M. (2006) · Molecular & Cellular Proteomics · doi:10.1074/mcp.m500298-mcp200 · Cited by 289 · cited 1× · see citing works
“Mostly, current efforts are concentrating on elucidating the complete mammalian mitochondrial proteome, a critical step in furthering our understanding of the role of mitochondria in health and disease [209,225,226].”
BackgroundEnriquez, J. A., Chomyn, A., & Attardi, G. (1995) · Nature Genetics · doi:10.1038/ng0595-47 · Cited by 285 · cited 1× · see citing works
“Finally, decreased mt-tRNA stability has been described with the m.8344A N G mutation both in vitro and in cybrid osteosarcoma cells [198,202].”
BackgroundManfredi, G., Fu, J., Ojaimi, J., Sadlock, J., Kwong, J. Q., Guy, J., & Schon, E. (2002) · Nature Genetics · doi:10.1038/ng851 · Cited by 282 · see citing works
Rescue of a mitochondrial deficiency causing Leber hereditary optic neuropathy
Guy, J. R., Qi, X., Pallotti, F., Schon, E. A., Manfredi, G., Carelli, V., Martinuzzi, A., Hauswirth, W. W., & Lewin, A. S. (2002) · Annals of Neurology · doi:10.1002/ana.10354 · Cited by 273 · cited 1× · see citing works
“Initial attempts to recover respiratory defects in cybrids harbouring MT-ATP6 and MT-ND1 mutations, by engineered nuclear expression of their wild-type proteins [238,239], have been improved recently by forcing mRNA localisation to the mitochondrial surface, which ensures maximal mitochondrial translocation of the hig…”
BackgroundYasukawa, T., Suzuki, T., Suzuki, T., Ueda, T., Ohta, S., & Watanabe, K. (2000) · Journal of Biological Chemistry · doi:10.1074/jbc.275.6.4251 · Cited by 268 · see citing works
Vielhaber, S. (2000) · Brain · doi:10.1093/brain/123.7.1339 · Cited by 260 · cited 1× · see citing works
“The amount and tissue distribution of the deleted mtDNA are the most important factors in determining clinical symptoms, and not, as one might expect, the size and location of the deletions [99–101].”
BackgroundDiagnoses of neuronal ceroid‐lipofuscinosis by immunochemical methods
Hosain, S. A., Kaufmann, W. E., Negrin, G., Watkins, P. A., Siakotos, A. N., Palmer, D. N., & Naidu, S. (1995) · American Journal of Medical Genetics · doi:10.1002/ajmg.1320570226 · Cited by 256 · see citing works
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“TFAM also binds to other regions of the D-loop; however, only binding to the CSB region is shown. begins shortly after replication initiation and is the result of the generation of short Okazaki ribonucleotide fragments, subsequently converted to DNA [28].”
BackgroundNucleotide sequence evidence for rapid genotypic shifts in the bovine mitochondrial DNA D-loop
Olivo, P. D., de Walle, M. J. V., Laipis, P. J., & Hauswirth, W. W. (1983) · Nature · doi:10.1038/306400a0 · Cited by 250 · cited 1× · see citing works
“mtDNA bottleneck during development [67–72].”
Selective inhibition of mutant human mitochondrial DNA replication in vitro by peptide nucleic acids
Taylor, R. W., Chinnery, P. F., Turnbull, D. M., & Lightowlers, R. N. (1997) · Nature Genetics · doi:10.1038/ng0297-212 · Cited by 249 · cited 1× · see citing works
“Antigenomic therapy, which involves using sequence-specific nucleic acid derivatives that selectively target and inhibit the replication of mutated mtDNA thus allowing the wild-type genome to propagate, showed promising initial results in vitro with peptide nucleic acids (PNAs) [234].”
BackgroundHuman mitochondrial tRNAs in health and disease
Florentz, C., Sohm, B., Tóth, P., P�tz, J., & Sissler, M. (2003) · Cellular and Molecular Life Sciences · doi:10.1007/s00018-003-2343-1 · Cited by 249 · cited 1× · see citing works
“For more in-depth reviews of the effects of mutations on mt-tRNA structure and function see references [206 – 208].”
BackgroundMapping of mitochondrial DNA of individual sheep and goats: Rapid evolution in the D loop region
Upholt, W. B., & Dawid, I. B. (1977) · Cell · doi:10.1016/0092-8674(77)90075-7 · Cited by 247 · cited 1× · see citing works
“The observation of a rapid segregation in mammalian hetero-plasmic mtDNA genotypes between generations, with a return to homoplasmy in some progeny, has suggested the existence of a mtDNA bottleneck during development [67 – 72].”
BackgroundIncreased <i>in vivo</i> apoptosis in cells lacking mitochondrial DNA gene expression
Wang, J., Silva, J. P., Gustafsson, C. M., Rustin, P., & Larsson, N.-G. (2001) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.061038798 · Cited by 245 · cited 1× · see citing works
“Furthermore, no increase in programmed cell death was identi fi ed in this mouse model, contrary to a double TFAM knockout mouse model in which substantial apoptosis occurred at embryonic day 9.5 [179,190].”
ResultInfluentialDecrease of 3243 A–>G mtDNA mutation from blood in MELAS syndrome: a longitudinal study
Rahman, S., Poulton, J., Marchington, D., & Suomalainen, A. (2001) · The American Journal of Human Genetics · doi:10.1086/316930 · Cited by 237 · see citing works
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Hess, J. F., Parisi, M. A., Bennett, J. L., & Clayton, D. A. (1991) · Nature · doi:10.1038/351236a0 · Cited by 234 · cited 1× · see citing works
“…common mt-tRNA Leu(UUR) m.3243A N G mutation, which interferes with a transcription termination site located at the boundary of the 16S mt-rRNA and mt-tRNA Leu(UUR) genes, causing accumulation of an unprocessed RNA intermediate (RNA19) including 16S mt-rRNA, mt-tRNA Leu(UUR) and MTND1 [191 – 193].”
BackgroundMitochondrial DNA polymerase-γ and human disease
Hudson, G., & Chinnery, P. F. (2006) · Human Molecular Genetics · doi:10.1093/hmg/ddl233 · Cited by 221 · cited 1× · see citing works
“, SLC25A4) [88–90].”
Taivassalo, T., Gardner, J. L., Taylor, R. W., Schaefer, A. M., Newman, J., Barron, M. J., Haller, R. G., & Turnbull, D. M. (2006) · Brain · doi:10.1093/brain/awl282 · Cited by 220 · cited 1× · see citing works
“Well tolerated and safe, endurance training for up to 14 weeks has been found to improve OXPHOS function, although no concomitant shift in mutated mtDNA levels in muscle has been observed and cessation in training does cause a loss of the physiological adaptations [228–230].”
BackgroundSelf-citationNovel DNA mismatch-repair activity involving YB-1 in human mitochondria
de Souza-Pinto, N. C., Mason, P. A., Hashiguchi, K., Weissman, L., Tian, J., Guay, D., Lebel, M., Stevnsner, T. V., Rasmussen, L. J., & Bohr, V. A. (2009) · DNA repair · doi:10.1016/j.dnarep.2009.01.021 · Cited by 214 · see citing works
Aerobic training is safe and improves exercise capacity in patients with mitochondrial myopathy
Jeppesen, T. D., Schwartz, M., Olsen, D. B., Wibrand, F., Krag, T., Duno, M., Hauerslev, S., & Vissing, J. (2006) · Brain · doi:10.1093/brain/awl149 · Cited by 211 · see citing works
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Margulis, L. (1971) · Scientific American · doi:10.1038/scientificamerican0871-48 · Cited by 200 · cited 1× · see citing works
“Considered evolutionary relics of ancient bacterial symbionts, mitochondria have gradually transferred the vast majority of their genetic material to the nucleus [10].”
BackgroundA new mtDNA mutation showing accumulation with time and restriction to skeletal muscle.
Weber, K., Wilson, J., Taylor, L., Brierley, E. J., Johnson, M. A., Turnbull, D. M., & Bindoff, L. A. (1997) · PubMed · Cited by 199 · see citing works
Self-citationChomyn, A., Enriquez, J. A., Micol, V., Fernandez-Silva, P., & Attardi, G. (2000) · Journal of Biological Chemistry · doi:10.1074/jbc.m908734199 · Cited by 197 · see citing works
Random genetic drift determines the level of mutant mtDNA in human primary oocytes
Brown, D. T., Samuels, D. C., Michael, E. M., Turnbull, D. M., & Chinnery, P. F. (2001) · The American Journal of Human Genetics · doi:10.1086/318190 · Cited by 196 · cited 1× · see citing works
“The outcome of speci fi c pregnancies remains unpredictable due to the genetic bottleneck, which leads to considerable variation in the proportion of mutant mtDNA in different offspring [248].”
BackgroundMitochondrial Disease—Its Impact, Etiology, and Pathology
McFarland, R., Taylor, R. W., & Turnbull, D. M. (2007) · Current topics in developmental biology/Current Topics in Developmental Biology · doi:10.1016/s0070-2153(06)77005-3 · Cited by 192 · cited 1× · see citing works
“Since then, over 250 pathogenic mtDNA mutations (point mutations and rearrangements) have been characterised [56], shown to cause a wide variety of diseases with a heterogeneity of phenotypes and a variable age of onset [57].”
BackgroundSelf-citationThe diagnosis of mitochondrial muscle disease
Taylor, R. W., Schaefer, A. M., Barron, M. J., McFarland, R., & Turnbull, D. M. (2004) · Neuromuscular Disorders · doi:10.1016/j.nmd.2003.12.004 · Cited by 192 · cited 2× · see citing works
“…interactions between the nuclear and mitochondrial genome, the laboratory diagnosis of mtDNA disease often involves piecing together information from clinical, histochemical, and biochemical testing to inform molecular testing, allowing the development of rational diagnostic algorithms [129,130].”
BackgroundMethodSelf-citationEthidium Bromide-Induced Loss of Mitochondrial DNA from Primary Chicken Embryo Fibroblasts
Desjardins, P., Frost, E. H., & Morais, R. (1985) · Molecular and Cellular Biology · doi:10.1128/mcb.5.5.1163-1169.1985 · Cited by 187 · cited 1× · see citing works
“Following pioneering work by Morais and colleagues between 1985 and 1988 establishing avian ρ cells [151,152], the first transmitochondrial cytoplasmic hybrid cells (cybrids) using human ρ cells were described in 1989 [153].”
MethodTwo direct repeats cause most human mtDNA deletions
Samuels, D. C., Schon, E. A., & Chinnery, P. F. (2004) · Trends in Genetics · doi:10.1016/j.tig.2004.07.003 · Cited by 185 · cited 1× · see citing works
“They mainly occur between the origins of replication, O H and O L , and are typically fl anked by short direct repeats [94,95].”
BackgroundGenetic modification of survival in tissue-specific knockout mice with mitochondrial cardiomyopathy
Li, H., Wang, J., Wilhelmsson, H., Hansson, A., Thorén, P., Duffy, J., Rustin, P., & Larsson, N.-G. (2000) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.97.7.3467 · Cited by 185 · cited 1× · see citing works
“TFAM [176–182], POLG (‘Mutator’ model) [183], and PEO1 (Twinkle; ‘Deletor’ model) [184].”
Mutations of the mitochondrial ND1 gene as a cause of MELAS
Kirby, D. M., McFarland, R., Ohtake, A., Dunning, C. J. R., Ryan, M. T., Wilson, C. J., Ketteridge, D., Turnbull, D. M., Thorburn, D. R., & Taylor, R. W. (2004) · Journal of Medical Genetics · doi:10.1136/jmg.2004.020537 · Cited by 179 · cited 1× · see citing works
“13514ANG) [114–117] and MT-ND1 mutations [118]) may also cause MELAS.”
BackgroundSelf-citationTaylor, R. W., Giordano, C., Davidson, M. M., d’Amati, G., Bain, H. H., Hayes, C. M., Leonard, H., Barron, M. J., Casali, C., Santorelli, F. M., et al. (2003) · Journal of the American College of Cardiology · doi:10.1016/s0735-1097(03)00300-0 · Cited by 179 · see citing works
Self-citationDifferentiation-specific effects of LHON mutations introduced into neuronal NT2 cells
Wong, A. (2002) · Human Molecular Genetics · doi:10.1093/hmg/11.4.431 · Cited by 179 · cited 1× · see citing works
“11778GNA LHON mutations [187], in lymphocytes with m.”
Backgroundvan der Giezen, M., & Tovar, J. (2005) · EMBO Reports · doi:10.1038/sj.embor.7400440 · Cited by 177 · cited 1× · see citing works
“Furthermore, these organelles are central to iron – sulphur cluster biogenesis, the only entirely conserved function of eukaryote mitochondria [6].”
BackgroundAssigning pathogenicity to mitochondrial tRNA mutations: when ‘definitely maybe’ is not good enough
McFarland, R., Elson, J. L., Taylor, R. W., et al. (2004) · Trends in Genetics · doi:10.1016/j.tig.2004.09.014 · Cited by 176 · cited 1× · see citing works
“nicity for a novel mtDNA variant, originally proposed by DiMauro and Schon [146] and applied by others [147,148], should be considered”
BackgroundSelf-citationBase excision repair in nuclear and mitochondrial DNA
Dianov, G. L., Souza-Pinto, N., Nyaga, S. G., Thybo, T., Stevnsner, T., & Bohr, V. A. (2001) · Progress in nucleic acid research and molecular biology · doi:10.1016/s0079-6603(01)68107-8 · Cited by 174 · cited 1× · see citing works
“Although mtDNA repair systems do exist [51,52], they are not suf fi cient to counteract the oxidative damage sustained by the mitochondrial genome due to its proximity to the RC complexes in the IMM and the ROS they generate.”
BackgroundSkewed Segregation of the mtDNA nt 8993 (TrG) Mutation in Human Oocytes
Blok, R. B., Gook, D. A., Thorburn, D. R., & Dahl, H. M. (1997) · The American Journal of Human Genetics · doi:10.1086/515453 · Cited by 174 · see citing works
Prevalence of Mitochondrial 1555A→G Mutation in European Children
Bitner-Glindzicz, M. A. K., Pembrey, M. E., Duncan, A., Heron, J., Ring, S. M., Hall, A. J., & Rahman, S. (2009) · New England Journal of Medicine · doi:10.1056/nejmc0806396 · Cited by 172 · see citing works
Gene therapy for progeny of mito-mice carrying pathogenic mtDNA by nuclear transplantation
Sato, A., Kono, T., Nakada, K., Ishikawa, K., Inoue, S.-I., Yonekawa, H., & Hayashi, J.-I. (2005) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0506197102 · Cited by 171 · cited 1× · see citing works
“Previous studies in heteroplasmic mice have suggested the feasibility of this approach [253].”
BackgroundTaylor, R. W. (2001) · Nucleic Acids Research · doi:10.1093/nar/29.15.e74 · Cited by 171 · cited 1× · see citing works
“Many laboratories, however, continue to directly sequence the entire mitochondrial genome in affected tissues, using over-lapping primer sets to ensure complete coverage of the 16.6 kb genome [145].”
BackgroundInfluentialSelf-citationIdentification of a Novel Mutation in the mtDNA ND5 Gene Associated with MELAS
Santorelli, F. M., Tanji, K., Kulikova, R., Shanske, S., Vilarinho, L., Hays, A. P., & DiMauro, S. (1997) · Biochemical and Biophysical Research Communications · doi:10.1006/bbrc.1997.7167 · Cited by 170 · cited 1× · see citing works
“13514ANG) [114–117] and MT-ND1 mutations [118]) may also cause MELAS.”
BackgroundQuantitative neuropathological changes in presymptomatic Huntington's disease
Gómez‐Tortosa, E., MacDonald, M. E., Friend, J. C., Taylor, S. A., Weiler, L., Cupples, L. A., Srinidhi, J., Gusella, J. F., Bird, E. D., Vonsattel, J., et al. (2001) · Annals of Neurology · doi:10.1002/1531-8249(200101)49:1 · Cited by 170 · see citing works
Multiple neonatal deaths due to a homoplasmic mitochondrial DNA mutation
McFarland, R., Clark, K. M., Morris, A. A. M., Taylor, R. W., Macphail, S., Lightowlers, R. N., & Turnbull, D. M. (2002) · Nature Genetics · doi:10.1038/ng819 · Cited by 170 · cited 2× · see citing works
“A global decrease in the activity of COX is usually suggestive of a nuclear mutation in an ancillary protein required for COX assembly such as SURF1 but can be associated with some homoplasmic mt-tRNA defects [77,78].”
BackgroundSelf-citationCoordinate Induction of Energy Gene Expression in Tissues of Mitochondrial Disease Patients
Heddi, A., Stepien, G., Benke, P. J., & Wallace, D. C. (1999) · Journal of Biological Chemistry · doi:10.1074/jbc.274.33.22968 · Cited by 169 · cited 1× · see citing works
“This response has previously been reported in muscle with over 88% levels of the m.3243A N G mutation [217], but it is also thought to represent a sustained effect of the cybridisation process [158].”
BackgroundSörensen, L., Ekstrand, M., Silva, J., Lindqvist, E., Xu, B., Rustin, P., Olson, L., & Larsson, N.-G. (2001) · The Journal of Neuroscience · doi:10.1523/jneurosci.21-20-08082.2001 · Cited by 167 · cited 1× · see citing works
“TFAM [176–182], POLG (‘Mutator’ model) [183], and PEO1 (Twinkle; ‘Deletor’ model) [184].”
Resistance training in patients with single, large-scale deletions of mitochondrial DNA
Murphy, J. L., Blakely, E. L., Schaefer, A. M., He, L., Wyrick, P. S., Haller, R. G., Taylor, R. W., Turnbull, D. M., & Taivassalo, T. (2008) · Brain · doi:10.1093/brain/awn252 · Cited by 167 · cited 1× · see citing works
“Twelve-week resistance training studies in patients with single, large-scale mtDNA deletions have been demonstrated to increase satellite cell number with concomitant improvements in muscular strength and oxidative capacity evidenced by a decrease in the proportion of COX-negative fi bres [233].”
BackgroundSelf-citationSequence-specific modification of mitochondrial DNA using a chimeric zinc finger methylase
Minczuk, M., Papworth, M. A., Kolasinska, P., Murphy, M. P., & Klug, A. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0609502103 · Cited by 166 · see citing works
The MTERF family proteins: Mitochondrial transcription regulators and beyond
Roberti, M., Polosa, P. L., Bruni, F., Manzari, C., Deceglie, S., Gadaleta, M. N., & Cantatore, P. (2009) · Biochimica et Biophysica Acta (BBA) - Bioenergetics · doi:10.1016/j.bbabio.2009.01.013 · Cited by 166 · cited 1× · see citing works
“…transcription machinery consists of a limited number of nuclear-encoded proteins: the dedicated mitochondrial RNA polymerase (POLRMT), the transcription activator TFAM, the transcription factor TFB2M (but probably not TFB1M as previously thought [33,34]), and the termination factor mTERF [35].”
BackgroundLarsson, N., Tulinius, M., Holme, E., Oldfors, A., Andersen, O., Wahlström, J., & Aasly, J. O. (1992) · Europe PMC (PubMed Central) · Cited by 163 · see citing works
Gene shifting: a novel therapy for mitochondrial myopathy
Taivassalo, T. (1999) · Human Molecular Genetics · doi:10.1093/hmg/8.6.1047 · Cited by 160 · cited 1× · see citing works
“plasmy levels sufficiently to recover muscular function (termed “gene shifting”) [232].”
BackgroundGenetic heterogeneity and mitochondrial DNA heteroplasmy in Leber's hereditary optic neuropathy.
Holt, I. J., Miller, D. H., & Harding, A. E. (1989) · Journal of Medical Genetics · doi:10.1136/jmg.26.12.739 · Cited by 159 · cited 1× · see citing works
“mtDNA bottleneck during development [67–72].”
Kolesnikova, O. A., Entelis, N. S., Jacquin-Becker, C., Goltzene, F., Chrzanowska-Lightowlers, Z. M., Lightowlers, R. N., Martin, R. P., & Tarassov, I. (2004) · Human Molecular Genetics · doi:10.1093/hmg/ddh267 · Cited by 157 · cited 1× · see citing works
“Imported tRNA molecules are correctly aminoacylated, able to participate in mitochondrial translation, and partially rescue mitochondrial functions [242].”
BackgroundRubio, M. A. T., Rinehart, J. J., Krett, B., Duvezin-Caubet, S., Reichert, A. S., Söll, D., & Alfonzo, J. D. (2008) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0804283105 · Cited by 154 · cited 1× · see citing works
“[243] have demonstrated the import of cytosolic tRNA and tRNA in rat and humanmitochondria in vivo, by a mechanism distinct from that of protein import.”
BackgroundA new mutation associated with MELAS is located in a mitochondrial DNA polypeptide-coding gene
Manfredi, G., Schon, E. A., Moraes, C. T., Bonilla, E., Berry, G. T., Sladky, J. T., & DiMauro, S. (1995) · Neuromuscular Disorders · doi:10.1016/0960-8966(94)00079-o · Cited by 153 · cited 1× · see citing works
“…m.3271T N C) [111], other mt-tRNA genes (e.g., m.1642G N A, MT-TV gene) [112] and protein-encoding genes (e.g., m.9957T N C in the MT-CO3 gene [113], several MT-ND5 mutations (m.12770A N G, m.13045A N C, m.13513G N A and m.13514A N G) [114 – 117] and MT-ND1 mutations [118]) may also cause…”
BackgroundMammalian mitochondrial nucleoids: Organizing an independently minded genome
Holt, I. J., He, J., Mao, C.-C., Boyd-Kirkup, J. D., Martinsson, P., Sembongi, H., Reyes, A., & Spelbrink, J. N. (2007) · Mitochondrion · doi:10.1016/j.mito.2007.06.004 · Cited by 150 · cited 2× · see citing works
“Key proteins involved in mtDNA replication, maintenance, repair, and recombination, such asmitochondrial single-stranded binding protein (mt-SSB), mitochondrial polymerase γ (POLG), and mitochondrial transcription factor A (TFAM), are just some of the major constituent proteins associated with these structures [15–17].”
BackgroundSasarman, F., Antonická, H., & Shoubridge, E. A. (2008) · Human Molecular Genetics · doi:10.1093/hmg/ddn265 · Cited by 148 · cited 1× · see citing works
“Similar abilities for EFTu in human myoblasts harbouring the m.3243A N G mutation [165] and leucyl-tRNA synthetase in transmi-tochondrial WS277.”
BackgroundMitochondrial DNA Mutations in Disease, Aging, and Neurodegeneration
Reeve, A. K., Krishnan, K. J., & Turnbull, D. M. (2008) · Annals of the New York Academy of Sciences · doi:10.1196/annals.1427.016 · Cited by 146 · see citing works
Self-citationSteffann, J., Frydman, N., Gigarel, N., Burlet, P., Ray, P. F., Fanchin, R., Feyereisen, E., Kerbrat, V, Tachdjian, G., Bonnefont, J.-P., et al. (2006) · Journal of Medical Genetics · doi:10.1136/jmg.2005.032326 · Cited by 145 · cited 1× · see citing works
“Despite its promise, PGD has only been successfully completed in one case of mtDNA disease [251].”
BackgroundNuclear genetic control of mitochondrial DNA segregation
Battersby, B. J., Loredo-Osti, J. C., & Shoubridge, E. A. (2003) · Nature Genetics · doi:10.1038/ng1073 · Cited by 144 · cited 1× · see citing works
“However, the repeated observation of directional selection for one mtDNA genotype in certain tissues [170], mediated by single tissue-speci fi c factors [171], suggests these mouse models will be particularly important in our quest to understanding the basis of tissue speci fi city and mtDNA somatic…”
BackgroundMcCulloch, V., & Shadel, G. S. (2003) · Molecular and Cellular Biology · doi:10.1128/mcb.23.16.5816-5824.2003 · Cited by 142 · see citing works
Hakkaart, G. A. J., Dassa, E. P., Jacobs, H. T., & Rustin, P. (2005) · EMBO Reports · doi:10.1038/sj.embor.7400601 · Cited by 139 · cited 1× · see citing works
“Furthermore, an encouraging strategy for the potential rescue of mitochondrial COX defects may soon be possible following the successful transfection and IMM targeting in human cultured cells of the sea squirt Ciona intestinalis cyanide-insensitive alternative oxidase (AOX) [247].”
BackgroundEthidium bromide-induced loss of mitochondrial DNA from primary chicken embryo fibroblasts.
Desjardins, P., Frost, E., & Morais, R. (1985) · Molecular and Cellular Biology · doi:10.1128/mcb.5.5.1163 · Cited by 139 · see citing works
Serero, A., Giglione, C., Sardini, A., Martinez‐Sanz, J., & Meinnel, T. (2003) · Journal of Biological Chemistry · doi:10.1074/jbc.m309770200 · Cited by 138 · cited 1× · see citing works
“mtRRF [45,46], and the methionine aminopeptidase MAP1D, which removes N-terminal methionines [47].”
BackgroundThe neurology of mitochondrial DNA disease
McFarland, R., Taylor, R. W., & Turnbull, D. M. (2002) · The Lancet Neurology · doi:10.1016/s1474-4422(02)00159-x · Cited by 134 · cited 1× · see citing works
“…interactions between the nuclear and mitochondrial genome, the laboratory diagnosis of mtDNA disease often involves piecing together information from clinical, histochemical, and biochemical testing to inform molecular testing, allowing the development of rational diagnostic algorithms [129,130].”
MethodSelf-citationSoleimanpour‐Lichaei, H. R., Kühl, I., Gaisne, M., Passos, J. F., Wydro, M. M., Rorbach, J., Temperley, R., Bonnefoy, N., Tate, W. P., Lightowlers, R. N., et al. (2007) · Molecular Cell · doi:10.1016/j.molcel.2007.06.031 · Cited by 132 · cited 1× · see citing works
“[43].”
Nature of Mitochondrial DNA Deletions in Substantia Nigra Neurons
Reeve, A. K., Krishnan, K. J., Elson, J. L., Morris, C. M., Bender, A., Lightowlers, R. N., & Turnbull, D. M. (2008) · The American Journal of Human Genetics · doi:10.1016/j.ajhg.2007.09.018 · Cited by 132 · cited 1× · see citing works
“Their mechanism of generation is also thought to be identical, irrespective of the clinical phenotype [96], although the exact method by which deletions are formed is currently under debate.”
BackgroundSelf-citationDiscovery of a Major D-Loop Replication Origin Reveals Two Modes of Human mtDNA Synthesis
Fish, J. L., Raule, N., & Attardi, G. M. (2004) · Science · doi:10.1126/science.1102077 · Cited by 131 · cited 2× · see citing works
“A second more conventional replication method has been suggested in which coupled leading-lagging strand DNA replication, also initiating at O H , is coordinated [26,27].”
BackgroundMethodShanske, S., Pancrudo, J., Kaufmann, P., Engelstad, K., Jhung, S., Lu, J., Naini, A., DiMauro, S., & Vivo, D. C. D. (2004) · American Journal of Medical Genetics Part A · doi:10.1002/ajmg.a.30220 · Cited by 130 · cited 1× · see citing works
“…the addition of a radio-or fl uorescent label in the fi nal PCR cycle to permit accurate quanti fi cation of mtDNA heteroplasmy; however, the m.3243A N G mutation is positively selected against in this tissue, prompting the investigation of other noninvasive tissue samples for diagnosis [136,137].”
BackgroundBonnet, C., Augustin, S., Ellouze, S., Bénit, P., Bouaita, A., Rustin, P., Sahel, J.-A., & Corral-Debrinski, M. (2008) · Biochimica et Biophysica Acta (BBA) - Molecular Cell Research · doi:10.1016/j.bbamcr.2008.04.018 · Cited by 130 · see citing works
Treatment for mitochondrial disorders
Chinnery, P. F., Majamaa, K., Turnbull, D. M., & Thorburn, D. R. (2006) · Cochrane Database of Systematic Reviews · doi:10.1002/14651858.cd004426.pub2 · Cited by 129 · see citing works
Self-citationKoc, E. C., & Spremulli, L. L. (2002) · Journal of Biological Chemistry · doi:10.1074/jbc.m202498200 · Cited by 128 · cited 1× · see citing works
“IF3) [38,39], four mitochondrial elongation factors (EFG1, EFG2, EFTs, and EFTu) [40–42], and at least one termination release factor, mtRF1a”
BackgroundMitochondria in cybrids containing mtDNA from persons with mitochondriopathies
Swerdlow, R. H. (2007) · Journal of Neuroscience Research · doi:10.1002/jnr.21167 · Cited by 128 · cited 2× · see citing works
“For further details on the history, development and use of cybrids for the study of mtDNA mutations see Khan et al. [155] and Swerdlow [156].”
BackgroundMunakata, K., Iwamoto, K., Bundo, M., & Kato, T. (2005) · Biological Psychiatry · doi:10.1016/j.biopsych.2004.11.041 · Cited by 127 · see citing works
Sequence variation in mitochondrial complex I genes: mutation or polymorphism?
Mitchell, A. L., Elson, J. L., Howell, N., et al. (2005) · Journal of Medical Genetics · doi:10.1136/jmg.2005.032474 · Cited by 126 · see citing works
Self-citationGenetic, pathogenetic, and phenotypic implications of the mitochondrial A3243G tRNALeu(UUR) mutation
Finsterer, J. (2007) · Acta Neurologica Scandinavica · doi:10.1111/j.1600-0404.2007.00836.x · Cited by 125 · cited 1× · see citing works
“For more in-depth reviews of the effects of mutations on mt-tRNA structure and function see references [206 – 208].”
BackgroundYasukawa, T., Suzuki, T., Ishii, N., Ueda, T., Ohta, S., & Watanabe, K. (2000) · FEBS Letters · doi:10.1016/s0014-5793(00)01145-5 · Cited by 124 · see citing works
Shanske, S., Çoku, J., Lu, J., et al. (2008) · PubMed · doi:10.1001/archneurol.2007.67 · Cited by 124 · cited 1× · see citing works
“13514ANG) [114–117] and MT-ND1 mutations [118]) may also cause MELAS.”
BackgroundPrevalence of Mitochondrial 1555A→G Mutation in Adults of European Descent
Vandebona, H., Mitchell, P., Manwaring, N., Griffiths, K., Gopinath, B., Wang, J. J., & Sue, C. M. (2009) · New England Journal of Medicine · doi:10.1056/nejmc0806397 · Cited by 124 · see citing works
Is the mitochondrial complex I ND5 gene a hot‐spot for MELAS causing mutations?
Liolitsa, D., Rahman, S., Benton, S., et al. (2002) · Annals of Neurology · doi:10.1002/ana.10435 · Cited by 123 · cited 1× · see citing works
“…m.3271T N C) [111], other mt-tRNA genes (e.g., m.1642G N A, MT-TV gene) [112] and protein-encoding genes (e.g., m.9957T N C in the MT-CO3 gene [113], several MT-ND5 mutations (m.12770A N G, m.13045A N C, m.13513G N A and m.13514A N G) [114 – 117] and MT-ND1 mutations [118]) may also cause MELAS.”
BackgroundPohjoismäki, J. L. O., Goffart, S., Tyynismaa, H., Willcox, S., Ide, T., Kang, D., Suomalainen, A., Karhunen, P. J., Griffith, J. D., Holt, I. J., et al. (2009) · Journal of Biological Chemistry · doi:10.1074/jbc.m109.016600 · Cited by 122 · see citing works
Nuclear genes and mitochondrial translation: a new class of genetic disease
Jacobs, H. T., & TURNBULL, D. (2005) · Trends in Genetics · doi:10.1016/j.tig.2005.04.003 · Cited by 118 · cited 1× · see citing works
“Reviews on nuclear gene defects in mitochondrial disorders are available [7 – 9].”
BackgroundSelf-citationProtection by the NDI1 gene against neurodegeneration in a rotenone rat model of Parkinson's disease
Marella, M., Seo, B. B., Nakamaru-Ogiso, E., Greenamyre, J. T., Matsuno-Yagi, A., & Yagi, T. (2008) · PLoS ONE · doi:10.1371/journal.pone.0001433 · Cited by 116 · cited 1× · see citing works
“Mitochondrial targeting of the S.cerevisiae single subunit NADH oxidase, Ndi1, has been shown to rescue complex I de fi ciency in human cells [244] and also protect against neurodegeneration in rats fed with MPTP, a hallucinogen known to cause a form of Parkinson's disease (PD) [245].”
BackgroundBiochemical phenotypes associated with the mitochondrial ATP6 gene mutations at nt8993
Baracca, A., Sgarbi, G., Mattiazzi, M., Casalena, G., Pagnotta, E., Valentino, M. L., Moggio, M. G., Lenaz, G., Carelli, V., & Solaini, G. (2007) · Biochimica et Biophysica Acta (BBA) - Bioenergetics · doi:10.1016/j.bbabio.2007.05.005 · Cited by 116 · cited 1× · see citing works
“Increased ROS production has been described in neuronal NT2 cybrid cells containing m.3460G N A and m.11778G N A LHON mutations [187], in lymphocytes with m.8993T N C and m.8993T N G NARP mutations [188] and more recently in the chimeric m.3243A N G mice mentioned previously [175].”
BackgroundA functionally dominant mitochondrial DNA mutation
Sacconi, S., Salviati, L., Nishigaki, Y., Walker, W. F., Hernandez-Rosa, E., Trevisson, E., Delplace, S., Desnuelle, C., Shanske, S., Hirano, M., et al. (2008) · Human Molecular Genetics · doi:10.1093/hmg/ddn073 · Cited by 113 · cited 1× · see citing works
“To complicate matters further, a dominant mt-tRNA mutation, m.5545C N T in the MT-TW gene, was recently reported with levels of mutation at b 25% in clinically affected tissues [83].”
BackgroundThe human mitochondrial ribosome recycling factor is essential for cell viability
Rorbach, J., Richter‐Dennerlein, R., Wessels, H. J. C. T., Wydro, M. M., Pękalski, M. Ł., Farhoud, M. H., Kühl, I., Gaisne, M., Bonnefoy, N., Smeitink, J. A. M., et al. (2008) · Nucleic Acids Research · doi:10.1093/nar/gkn576 · Cited by 112 · cited 1× · see citing works
“mtRRF [45,46], and the methionine aminopeptidase MAP1D, which removes N-terminal methionines [47].”
BackgroundTemperley, R., Seneca, S., Tońska, K., Bartnik, E., Bindoff, L., Lightowlers, R., & Chrzanowska-Lightowlers, Z. (2003) · Human Molecular Genetics · doi:10.1093/hmg/ddg238 · Cited by 110 · cited 2× · see citing works
“However, an increasing number of pathogenic homoplasmic mutations, often affecting just a single tissue and characterised by incomplete penetrance, are being recognised [77–82].”
BackgroundYoneda, M., Tanno, Y., Horai, S., Ozawa, T., Miyatake, T., & Tsuji, S. (1990) · PubMed · Cited by 107 · see citing works
Complex I deficiency is Associated with 3243G:C Mitochondrial DNA in Osteosarcoma Cell Cybrids
Dunbar, D. R., Moonie, P., Zeviani, M., & Holt, I. J. (1996) · Human Molecular Genetics · doi:10.1093/hmg/5.1.123 · Cited by 107 · see citing works
Exercise and training in mitochondrial myopathies
TAIVASSALO, T., & HALLER, R. G. (2005) · Medicine & Science in Sports & Exercise · doi:10.1249/01.mss.0000177446.97671.2a · Cited by 106 · cited 1× · see citing works
“Well tolerated and safe, endurance training for up to 14 weeks has been found to improve OXPHOS function, although no concomitant shift in mutated mtDNA levels in muscle has been observed and cessation in training does cause a loss of the physiological adaptations [228 – 230].”
Backgroundvan den Bosch, B. J. C. (2000) · Nucleic Acids Research · doi:10.1093/nar/28.20.e89 · Cited by 106 · cited 1× · see citing works
“Denaturing gradient gel electrophoresis (DGGE) [139,140] and denaturing high-performance liquid chromatography (dHPLC) [141,142] have been available for some years, whilst emerging technologies include resequencing microarrays such as the Affymetrix MitoChip 2.0 [143,144].”
MethodInfluentialDavies, S. M. K., Rackham, O., Shearwood, A.-M. J., Hamilton, K. L., Narsai, R., Whelan, J., & Filipovska, A. (2009) · FEBS Letters · doi:10.1016/j.febslet.2009.04.048 · Cited by 105 · cited 1× · see citing works
“Other recently identi fi ed nuclear-encoded factors are the translation regulator PTCD3 [44], the ribosome recycling factor mtRRF [45,46], and the methionine aminopeptidase MAP1D, which removes N-terminal methionines [47].”
BackgroundThe comeback of mitochondria to calcium signalling
Pozzan, T., Magalhães, P. M. R., & Rizzuto, R. (2000) · Cell Calcium · doi:10.1054/ceca.2000.0166 · Cited by 104 · cited 1× · see citing works
“In addition to OXPHOS metabolism, mitochondria control cytosolic calcium concentration [2] and regulate apoptotic cell death [3].”
BackgroundImpact of disease-related mitochondrial mutations on tRNA structure and function
Wittenhagen, L. M. (2003) · Trends in Biochemical Sciences · doi:10.1016/j.tibs.2003.09.006 · Cited by 102 · cited 1× · see citing works
“Formore in-depth reviews of the effects of mutations onmt-tRNA structure and function see references [206–208].”
BackgroundMouse models of mitochondrial DNA defects and their relevance for human disease
Tyynismaa, H., & Suomalainen, A. (2009) · EMBO Reports · doi:10.1038/embor.2008.242 · Cited by 102 · cited 1× · see citing works
“However, these models are beyond the scope of the current review; for further details see Vempati et al. [185] and Tyynismaa and Suomalainen [186].”
MethodA tRNA suppressor mutation in human mitochondria
Meziane, A. E., Lehtinen, S. K., Hance, N., Nijtmans, L. G. J., Dunbar, D. R., Holt, I. J., & Jacobs, H. T. (1998) · Nature Genetics · doi:10.1038/ng0498-350 · Cited by 101 · cited 1× · see citing works
“In addition, these cell models have challenged our established criteria for pathogenicity with the identi fi cation of the fi rst mt-tRNA suppressor mutation, m.12300G N A in MT-L2 [154], and the fi rst functionally dominant mt-tRNA mutation, m.5545C N T in MT-TW [155].”
BackgroundProtein import into mitochondria
Neupert, W., & Mokranjac, D. (2005) · Biochemical Society Transactions · doi:10.1042/bst20051019 · Cited by 100 · see citing works
Gaucher, S. P., Taylor, S. W., Fahy, E., et al. (2004) · Journal of Proteome Research · doi:10.1021/pr034102a · Cited by 99 · cited 1× · see citing works
“Mostly, current efforts are concentrating on elucidating the complete mammalian mitochondrial proteome, a critical step in furthering our understanding of the role of mitochondria in health and disease [209,225,226].”
BackgroundHelm, M., Florentz, C., Chomyn, A., & Attardi, G. (1999) · Nucleic Acids Research · doi:10.1093/nar/27.3.756 · Cited by 99 · see citing works
Bonnet, C., Kaltimbacher, V., Ellouze, S., Augustin, S., Bénit, P., Forster, V., Rustin, P., Sahel, J.-A., & Corral-Debrinski, M. (2007) · Rejuvenation Research · doi:10.1089/rej.2006.0526 · Cited by 98 · cited 1× · see citing works
“Initial attempts to recover respiratory defects in cybrids harbouring MT-ATP6 and MT-ND1 mutations, by engineered nuclear expression of their wild-type proteins [238,239], have been improved recently by forcing mRNA localisation to the mitochondrial surface, which ensures maximal mitochondrial translocation of the hig…”
BackgroundURINE HETEROPLASMY IS THE BEST PREDICTOR OF CLINICAL OUTCOME IN THE m.3243A>G mtDNA MUTATION
Whittaker, R. G., Blackwood, J. K., Alston, C. L., Blakely, E. L., Elson, J. L., McFarland, R., Chinnery, P. F., Turnbull, D. M., & Taylor, R. W. (2009) · Neurology · doi:10.1212/01.wnl.0000342121.91336.4d · Cited by 98 · see citing works
Self-citationNoninvasive diagnosis of the 3243A>G mitochondrial DNA mutation using urinary epithelial cells
McDonnell, M. T., Schaefer, A. M., Blakely, E. L., McFarland, R., Chinnery, P. F., Turnbull, D. M., & Taylor, R. W. (2004) · European Journal of Human Genetics · doi:10.1038/sj.ejhg.5201216 · Cited by 96 · see citing works
Self-citationBacman, S. R., Williams, S. L., Hernandez, D., & Moraes, C. T. (2007) · Gene Therapy · doi:10.1038/sj.gt.3302981 · Cited by 93 · cited 1× · see citing works
“…with both rat and mouse mtDNA and in a mouse model heteroplasmic for the BALB and NZB mtDNA haplotypes, this approach is limited to mtDNA mutations that introduce an additional restriction site although recent data demonstrate this restriction site need not be unique to the pathogenic genome [236].”
BackgroundDimerization of a pathogenic human mitochondrial tRNA
Wittenhagen, L. M., & Kelley, S. O. (2002) · Nature Structural Biology · doi:10.1038/nsb820 · Cited by 90 · cited 1× · see citing works
“…G, in the DHU stem, is responsible for a dramatic structural change, which disrupts both the L-shaped tertiary fold of mt-tRNA Leu(UUR) by preventing np A14/U8 interaction [200] and its quaternary structure by promoting the formation of a dimeric complex by intermolecular D-loop base pairing [201].”
BackgroundGenetic transformation of Saccharomyces cerevisiae mitochondria
Bonnefoy, N., & Fox, T. D. (2001) · Methods in cell biology · doi:10.1016/s0091-679x(01)65022-2 · Cited by 89 · cited 1× · see citing works
“Most importantly, this can be achieved in a highly controlled fashion as DNA delivered to mitochondria via biolistic transformation can only incorporate into the mitochondrial genome by homologous recombination [160].”
BackgroundValidation of microarray-based resequencing of 93 worldwide mitochondrial genomes
Hartmann, A., Thieme, M., Nanduri, L. K., Stempfl, T., Moehle, C., Kivisild, T., & Oefner, P. J. (2008) · Human Mutation · doi:10.1002/humu.20816 · Cited by 87 · cited 1× · see citing works
“Denaturing gradient gel electrophoresis (DGGE) [139,140] and denaturing high-performance liquid chromatography (dHPLC) [141,142] have been available for some years, whilst emerging technologies include resequencing microarrays such as the Affymetrix MitoChip 2.0 [143,144].”
MethodInfluentialRorbach, J., Yusoff, A. A. M., Tuppen, H. A. L., Kamaludin, D. P. A., Chrzanowska‐Lightowlers, Z. M., Taylor, R. W., Turnbull, D. M., McFarland, R., & Lightowlers, R. N. (2008) · Nucleic Acids Research · doi:10.1093/nar/gkn147 · Cited by 82 · cited 2× · see citing works
“1624CNT mutation, which caused a profound metabolic defect in skeletal and cardiac muscle, with low complex I and IV activities, and resulted in multiple neonatal deaths [159], were found to lack the marked respiratory defect despite retaining a striking reduction inmttRNA steady-state levels [159].”
BackgroundSelf-citationDiagnostic challenges of mitochondrial DNA disorders
Wong, L. C. (2006) · Mitochondrion · doi:10.1016/j.mito.2006.11.025 · Cited by 82 · cited 1× · see citing works
“severity and the proportion of mtDNA mutation is lacking [62].”
BackgroundWoriax, V. L., Burkhart, W., & Spremulli, L. L. (1995) · Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression · doi:10.1016/0167-4781(95)00176-x · Cited by 80 · see citing works
Mitochondrial medicine: entering the era of treatment
Koene, S., & Smeitink, J. A. M. (2009) · Journal of Internal Medicine · doi:10.1111/j.1365-2796.2008.02058.x · Cited by 80 · cited 1× · see citing works
“For comprehensive reviews regarding the treatment of mitochondrial disease, see references [235,254,255].”
BackgroundProgress and prospects: gene therapy for mitochondrial DNA disease
Kyriakouli, D. S., Boesch, P., Taylor, R. W., & Lightowlers, R. N. (2008) · Gene Therapy · doi:10.1038/gt.2008.91 · Cited by 76 · cited 2× · see citing works
“For comprehensive reviews regarding the treatment of mitochondrial disease, see references [235,254,255].”
BackgroundSelf-citationHomoplasmy, heteroplasmy, and mitochondrial dystonia
McFarland, R., Chinnery, P. F., Blakely, E. L., et al. (2007) · Neurology · doi:10.1212/01.wnl.0000267843.10977.4a · Cited by 76 · cited 1× · see citing works
“Whilst the majority of patients with m.11778A N G who have symptoms develop LHON, there have been a few reports of other neurodegenerative phenotypes including early-onset dystonia [80].”
BackgroundSelf-citationAn Oligonucleotide Microarray for High-Throughput Sequencing of the Mitochondrial Genome
Zhou, S., Kassauei, K., Cutler, D. J., Kennedy, G. C., Sidransky, D., Maitra, A., & Califano, J. A. (2006) · Journal of Molecular Diagnostics · doi:10.2353/jmoldx.2006.060008 · Cited by 74 · cited 1× · see citing works
“Denaturing gradient gel electrophoresis (DGGE) [139,140] and denaturing high-performance liquid chromatography (dHPLC) [141,142] have been available for some years, whilst emerging technologies include resequencing microarrays such as the Affymetrix MitoChip 2.0 [143,144].”
MethodInfluentialProspect of preimplantation genetic diagnosis for heritable mitochondrial DNA diseases
Dean, N. L. (2003) · Molecular Human Reproduction · doi:10.1093/molehr/gag077 · Cited by 74 · cited 1× · see citing works
“However, studies in heteroplasmic mice have demonstrated almost identical levels of heteroplasmy between the ooplasm and polar body of the mature oocyte and also between individual blastomeres [250].”
BackgroundSeibel, P., Degoul, F., Bonne, G., Romero, N. B., François, D., Paturneau-Jouas, M., Ziegler, F., Eymard, B., Fardeau, M., Marsac, C., et al. (1991) · Journal of the Neurological Sciences · doi:10.1016/0022-510x(91)90148-z · Cited by 73 · see citing works
Zhang, Y., & Spremulli, L. L. (1998) · Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression · doi:10.1016/s0167-4781(98)00223-1 · Cited by 73 · cited 1× · see citing works
“mtRRF [45,46], and the methionine aminopeptidase MAP1D, which removes N-terminal methionines [47].”
BackgroundRossmanith, W., & Karwan, R. M. (1998) · FEBS Letters · doi:10.1016/s0014-5793(98)00928-4 · Cited by 73 · cited 1× · see citing works
“3271TNC lead to impaired RNase P processing of 5′-leader sequences in vitro [194], whilst the mt-tRNA m.”
BackgroundKucharczyk, R., Rak, M., & di Rago, J. (2009) · Biochimica et Biophysica Acta (BBA) - Molecular Cell Research · doi:10.1016/j.bbamcr.2009.02.011 · Cited by 69 · see citing works
Vilkki, J., Savontaus, M. L., & Nikoskelainen, E. K. (1990) · Europe PMC (PubMed Central) · Cited by 69 · see citing works
Flagged first, then by citations
11 of the 272 references couldn’t be matched to a known paper.
Research works printed but not linked: 2
- Chen, 1995, Rearranged mitochondrial genomes are present in human oocytes, Am. J. Hum. Genet., 57, 239
- Oefner, 1995, Comparative DNA sequencing by high-performance liquid chromatography, Am. J. Hum. Genet., 57, A266
Cited by
Sorted by citations
The Role of Oxidative Stress in Parkinson's Disease
Dias, V., Junn, E., & Mouradian, M. M. (2013) · Journal of Parkinson’s Disease · doi:10.3233/jpd-130230 · Cited by 1,845 · see citing works
“In aged and PD afflicted brains, high levels of mitochondrial DNA (mtDNA) deletions are found in pigmented neurons of the substantia nigra [192] [193] [194] [195], and ROS-mediated damage can result in mutations in the mitochondrial genome [196] [197] [198].”
BackgroundMitochondrial DNA copy number in human disease: the more the better?
Filograna, R., Mennuni, M., Alsina, D., & Larsson, N. (2020) · FEBS Letters · doi:10.1002/1873-3468.14021 · Cited by 478 · see citing works
Effects of ionizing radiation on mitochondria
Kam, W. W.-Y., & Banati, R. B. (2013) · Free Radical Biology and Medicine · doi:10.1016/j.freeradbiomed.2013.07.024 · Cited by 386 · see citing works
Hypoxia induces mitochondrial protein lactylation to limit oxidative phosphorylation
Mao, Y.-Z., Zhang, J., Zhou, Q., He, X., Zheng, Z., Wei, Y., Zhou, K., Lin, Y., Yu, H., Zhang, H., et al. (2024) · Cell Research · doi:10.1038/s41422-023-00864-6 · Cited by 382 · see citing works
LRPPRC is necessary for polyadenylation and coordination of translation of mitochondrial mRNAs
Ruzzenente, B., Metodiev, M. D., Wredenberg, A., Bratić, A. M., Park, C. B., Cámara, Y., Milenkovic, D., Zickermann, V., Wibom, R., Hultenby, K. R., et al. (2011) · The EMBO Journal · doi:10.1038/emboj.2011.392 · Cited by 350 · see citing works
“Reduced mtDNA expression is a well-recognized cause of human mitochondrial disease (Tuppen et al , 2010) and is heavily implicated in age-associated diseases and ageing (Larsson, 2010; Wallace, 2010).”
The mitochondrial transcription factor TFAM in neurodegeneration: emerging evidence and mechanisms
Kang, I., Chu, C. T., & Kaufman, B. A. (2018) · FEBS Letters · doi:10.1002/1873-3468.12989 · Cited by 325 · see citing works
Functional Mitochondria in Health and Disease
Herst, P. M., Rowe, M. R., Carson, G. M., & Berridge, M. V. (2017) · Frontiers in Endocrinology · doi:10.3389/fendo.2017.00296 · Cited by 324 · see citing works
“In support of this, Lu and colleagues recently showed that exposing human MCF-7 breast cancer cells, HCT116 colon cancer, and U87 brain cancer cells to a single dose of 5 Gy caused a switch from aerobic glycolysis to OXPHOS, increasing their bioenergetic capacity and conferring radiation resistance (104).”
BackgroundInfluentialA neurological perspective on mitochondrial disease
McFarland, R., Taylor, R. W., & Turnbull, D. M. (2010) · The Lancet Neurology · doi:10.1016/s1474-4422(10)70116-2 · Cited by 315 · see citing works
Self-citationRecent Advances in Mitochondrial Disease
Craven, L., Alston, C. L., Taylor, R. W., & Turnbull, D. M. (2017) · Annual Review of Genomics and Human Genetics · doi:10.1146/annurev-genom-091416-035426 · Cited by 290 · see citing works
“The mitochondrial genome has a high mutation rate, 10–17 times that of the nuclear genome (94), which is assumed to be the result of increased oxidative damage caused by reactive oxygen species produced during oxidative phosphorylation.”
BackgroundSelf-citationMitochondrial Homeostasis and Cellular Senescence
Vasileiou, P. V. S., Evangelou, K., Vlasis, K. G., Fildisis, G., Panayiotidis, M. I., Chronopoulos, E., Passias, P.-G., Kouloukoussa, M., Gorgoulis, V. G., & Havaki, S. (2019) · Cells · doi:10.3390/cells8070686 · Cited by 246 · see citing works
Nesbitt, V., Pitceathly, R. D. S., Turnbull, D. M., et al. (2013) · Journal of Neurology Neurosurgery & Psychiatry · doi:10.1136/jnnp-2012-303528 · Cited by 234 · see citing works
Self-citationCardiac involvement in mitochondrial DNA disease: clinical spectrum, diagnosis, and management
Bates, M. G. D., Bourke, J. P., Giordano, C., d’Amati, G., Turnbull, D. M., & Taylor, R. W. (2012) · European Heart Journal · doi:10.1093/eurheartj/ehs275 · Cited by 228 · see citing works
“type 2 diabetes mellitus or migraine) to complex syndromes often involving neurological, ophthalmological, cardiological, gastroenterological, or endocrine features.(4) Proximal skeletal myopathy may be slowly progressive, while ophthalmological manifestations, including ptosis, ophthalmoplegia, cataracts, and optic a…”
BackgroundInfluentialSelf-citationDysfunctional Mitochondria and Mitophagy as Drivers of Alzheimer’s Disease Pathogenesis
Chakravorty, A., Jetto, C. T., & Manjithaya, R. R. (2019) · Frontiers in Aging Neuroscience · doi:10.3389/fnagi.2019.00311 · Cited by 219 · see citing works
“…can be induced by various factors like ROS, abnormal protein aggregates (Aβ, tau), mutations in genes encoded by the mitochondrial and nuclear genome, and exposure to toxic drugs (Angelini et al., 2009; Tuppen et al., 2010; Fischer et al., 2012; Manczak and Reddy, 2012a,b; Vuda and Kamath, 2016).”
BackgroundMechanisms of replication and repair in mitochondrial DNA deletion formation
Fontana, G. A., & Gahlon, H. L. (2020) · Nucleic Acids Research · doi:10.1093/nar/gkaa804 · Cited by 209 · see citing works
“Heteroplasmy influences the onset of clinical symptoms and a pathogenic threshold is often ascribed to 60–90% of the mutant mtDNA (32,33).”
BackgroundZinovkin, R. A., & Zamyatnin, A. A. (2019) · Current Molecular Pharmacology · doi:10.2174/1874467212666181127151059 · Cited by 209 · see citing works
Mitochondrial calcium homeostasis as potential target for mitochondrial medicine
Giorgi, C., Agnoletto, C., Bononi, A., Bonora, M., Marchi, E. D., Marchi, S., Missiroli, S., Patergnani, S., Poletti, F., Rimessi, A., et al. (2011) · Mitochondrion · doi:10.1016/j.mito.2011.07.004 · Cited by 200 · see citing works
Tissue-specific differences in mitochondrial activity and biogenesis
Fernández‐Vizarra, E., Enrı́quez, J. A., Martos, A. P., Montoya, J., & Fernández‐Silva, P. (2010) · Mitochondrion · doi:10.1016/j.mito.2010.09.011 · Cited by 195 · see citing works
“In mitochondrial pathology there is the concept of mutational threshold, that is, the percentage of mtDNA molecules carrying a specific pathological mutation that needs to be reached to observe a clinical or biochemical defect (Tuppen et al., 2010).”
BackgroundMitochondria: Impaired mitochondrial translation in human disease
Boczonadi, V., & Horváth, R. (2014) · The International Journal of Biochemistry & Cell Biology · doi:10.1016/j.biocel.2013.12.011 · Cited by 194 · see citing works
Metabolic rescue in pluripotent cells from patients with mtDNA disease
Ma, H., Folmes, C. D. L., Wu, J., Morey, R. E., Mora-Castilla, S., Ocampo, A., Ma, L., Poulton, J., Wang, X., Ahmed, R., et al. (2015) · Nature · doi:10.1038/nature14546 · Cited by 192 · see citing works
Kelly, R. D., Mahmud, A., McKenzie, M., Trounce, I. A., & John, J. C. S. (2012) · Nucleic Acids Research · doi:10.1093/nar/gks770 · Cited by 193 · see citing works
“Mutations, deletions and insertions to mtDNA lead to decreased OXPHOS capacity and mitochondrial function resulting in severely debilitating and often lethal pathophysiology (3).”
Pillai, V. B., Kanwal, A., Fang, Y. H., Sharp, W. W., Samant, S. A., Arbiser, J. L., & Gupta, M. P. (2017) · Oncotarget · doi:10.18632/oncotarget.16133 · Cited by 194 · see citing works
“Mitochondrial DNA mutations increase exponentially in post-mitotic tissues [33].”
BackgroundInfluentialMechanisms of chemotherapy-induced behavioral toxicities
Vichaya, E. G., Chiu, G. S., Krukowski, K., Lacourt, T. E., Kavelaars, A., Dantzer, R., Heijnen, C. J., & Walker, A. K. (2015) · Frontiers in Neuroscience · doi:10.3389/fnins.2015.00131 · Cited by 189 · see citing works
“Interestingly, mitochondrial DNA (mtDNA) and bacterial DNA are both rich in CpG motifs which is the primary ligand of TLR-9, suggesting that mitochondrial damage induced release of mtDNA can be a potent stimulator of the immune system via TLR-9 activation (Zhang et al., 2010).”
BackgroundInfluentialA comparative analysis approach to determining the pathogenicity of mitochondrial tRNA mutations
Yarham, J. W., Aldosary, M. S., Blakely, E. L., Alston, C. L., Taylor, R. W., Elson, J. L., & McFarland, R. (2011) · Human Mutation · doi:10.1002/humu.21575 · Cited by 183 · see citing works
“Sequencing of the mitochondrial genome was performed using skeletal muscle mtDNA as previously described [Tuppen et al., 2010b], and the resulting data were analyzed using SeqScape software (ABI) and compared to the rCRS (GenBank accession number NC_012920).”
BackgroundMethodSelf-citationCzajka, A., Ajaz, S., Gnudi, L., Parsade, C. K., Jones, P. M., Reid, F., & Malik, A. N. (2015) · EBioMedicine · doi:10.1016/j.ebiom.2015.04.002 · Cited by 183 · see citing works
“The role of MtDNA mutations in mitochondrial genetic disease (Hudson et al., 2014; Niaudet, 1998; Tuppen et al., 2010; Wallace and Chalkia, 2013) and of MtDNA as an inflammatory molecule (Collins et al.”
BackgroundDeBalsi, K. L., Hoff, K. E., & Copeland, W. C. (2017) · Ageing Research Reviews · doi:10.1016/j.arr.2016.04.006 · Cited by 180 · see citing works
Ogg1-Dependent DNA Repair Regulates NLRP3 Inflammasome and Prevents Atherosclerosis
Tumurkhuu, G., Shimada, K., Dagvadorj, J., Crother, T., Zhang, W., Luthringer, D., Gottlieb, R., Chen, S., & Arditi, M. (2016) · Circulation Research · doi:10.1161/circresaha.116.308362 · Cited by 164 · see citing works
Teissier, T., & Boulanger, É. (2019) · Biogerontology · doi:10.1007/s10522-019-09808-3 · Cited by 177 · see citing works
“Finally, mtDNA mutations have been associated with further increases in ROS gener- ation, mitochondrial dysfunction and chronic inflam- matory diseases, probably due to altered mitochondrial protein functions (Kim et al. 2015; Tuppen et al. 2010).”
BackgroundTALE and TALEN genome editing technologies
Becker, S., & Boch, J. (2021) · Gene and Genome Editing · doi:10.1016/j.ggedit.2021.100007 · Cited by 175 · see citing works
DNA repair in organelles: Pathways, organization, regulation, relevance in disease and aging
Boesch, P., Weber‐Lotfi, F., Ibrahim, N., Тарасенко, В. И., Cosset, A., Paulus, F., Lightowlers, R. N., & Dietrich, A. (2010) · Biochimica et Biophysica Acta (BBA) - Molecular Cell Research · doi:10.1016/j.bbamcr.2010.10.002 · Cited by 165 · see citing works
Sarewicz, M., & Osyczka, A. (2014) · Physiological Reviews · doi:10.1152/physrev.00006.2014 · Cited by 173 · see citing works
DNA replication fidelity in Escherichia coli : a multi-DNA polymerase affair
Fijałkowska, I. J., Schaaper, R. M., & Jonczyk, P. (2012) · FEMS Microbiology Reviews · doi:10.1111/j.1574-6976.2012.00338.x · Cited by 162 · see citing works
“While mutations are essential factors in mediating long-term processes of adaptation and evolution or in generating antibody diversity, in the short run mutations are generally deleterious and may be a cause of human disease, like birth defects or cancer (Loeb, 1991; Jackson & Loeb, 1998; Preston et al., 2010; Tuppen…”
BackgroundMitochondrial DNA mutations in neurodegeneration
Keogh, M. J., & Chinnery, P. F. (2015) · Biochimica et Biophysica Acta (BBA) - Bioenergetics · doi:10.1016/j.bbabio.2015.05.015 · Cited by 163 · see citing works
DNA repair in mammalian mitochondria: Much more than we thought?
Liu, P., & Demple, B. (2010) · Environmental and Molecular Mutagenesis · doi:10.1002/em.20576 · Cited by 159 · see citing works
Signaling and Regulation of the Mitochondrial Unfolded Protein ResponsePreprint
Naresh, N. U., & Haynes, C. M. (2019) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a033944 · Cited by 163 · see citing works
“As mtDNA harbors 13 protein-coding genes that are all essential for OXPHOS, mtDNAmutations can cause a wide range of pathologies, including neuropathies and myoclonic epilepsy (Tuppen et al. 2010).”
BackgroundLee, H.-S., Ma, H., Cervera‐Juanes, R. P., Tachibana, M., Sparman, M. L., Woodward, J., Ramsey, C. M., Xu, J., Kang, E.-J., Amato, P., et al. (2012) · Cell Reports · doi:10.1016/j.celrep.2012.03.011 · Cited by 152 · see citing works
“However, mtDNA mutations may also arise in the female germline resulting in maternally inherited human diseases (Taylor and Turnbull, 2005; Tuppen et al., 2010).”
DNA damage related crosstalk between the nucleus and mitochondria
Saki, M. R., & Prakash, A. (2016) · Free Radical Biology and Medicine · doi:10.1016/j.freeradbiomed.2016.11.050 · Cited by 151 · see citing works
“Mitochondrial mutations can cause coding errors in the 13 polypeptides involved in ATP generation via the ETC and in the 22 tRNA molecules encoded by the mitochondrial genome [25, 26].”
BackgroundmTORC1 pathway in DNA damage response.
Ma, Y.-X., Vassetzky, Y., & Dokudovskaya, S. (2018) · Biochimica et biophysica acta. Molecular cell research · doi:10.1016/j.bbamcr.2018.06.011 · Cited by 42 · see citing works
Filograna, R., Koolmeister, C., Upadhyay, M., Pajak, A., Clemente, P., Wibom, R., Simard, M., Wredenberg, A., Freyer, C., Stewart, J. B., et al. (2019) · Science Advances · doi:10.1126/sciadv.aav9824 · Cited by 143 · see citing works
Jones, A. W. E., Yao, Z., Vicencio, J. M., Karkucińska‐Więckowska, A., & Szabadkai, G. (2011) · Mitochondrion · doi:10.1016/j.mito.2011.09.009 · Cited by 145 · see citing works
“ing point mutations and rearrangements, have been found to cause a range of diseases (Tuppen et al., 2010; Wallace, 2010).”
BackgroundFang, J., Uchiumi, T., Yagi, M., Matsumoto, S., Amamoto, R., Takazaki, S., Yamaza, H., Nonaka, K., & Kang, D. (2012) · Bioscience Reports · doi:10.1042/bsr20120097 · Cited by 147 · see citing works
Mitochondria, spermatogenesis, and male infertility - an update.
Vertika, S., Singh, K. K., & Rajender, S. (2020) · Mitochondrion (Amsterdam. Print) · doi:10.1016/j.mito.2020.06.003 · Cited by 134 · see citing works
Peptide‐Based Multifunctional Nanomaterials for Tumor Imaging and Therapy
Zhang, C., Wu, W. H., Li, R., Qiu, W., Zhuang, Z., Cheng, S., & Zhang, X. (2018) · Advanced Functional Materials · doi:10.1002/adfm.201804492 · Cited by 135 · see citing works
Nuclear-Mitochondrial Interactions
Walker, B. R., & Moraes, C. T. (2022) · Biomolecules · doi:10.3390/biom12030427 · Cited by 136 · see citing works
“The mitochondrial genome has a mutation rate 10–17 fold higher than nuclear DNA, and over 250 pathogenic mutations have been identified [219].”
BackgroundPower of mitochondrial drug delivery systems to produce innovative nanomedicines
Yamada, Y., Satrialdi, S., Hibino, M., Sasaki, D., Abe, J., & Harashima, H. (2020) · Advanced Drug Delivery Reviews · doi:10.1016/j.addr.2020.09.010 · Cited by 129 · see citing works
Patterns of natural selection acting on the mitochondrial genome of a locally adapted fish species
Consuegra, S., John, E., Verspoor, E., & de Leániz, C. G. (2015) · Genetics Selection Evolution · doi:10.1186/s12711-015-0138-0 · Cited by 125 · see citing works
“A possible role of selection in mtDNA evolution is further supported by evidence from studies on mitochondrial dysfunction in human pathologies [16–18], with more than 250 pathogenic mtDNA mutations identified [19] and by the observed regional distribution of human haplotypes [20, 21].”
BackgroundATP Synthase Diseases of Mitochondrial Genetic Origin
Dautant, A., Meier, T., Hahn, A., Tribouillard-Tanvier, D., di Rago, J.-P., & Kucharczyk, R. (2018) · Frontiers in Physiology · doi:10.3389/fphys.2018.00329 · Cited by 127 · see citing works
“More than 150 distinct genetic mitochondrial dysfunction syndromes characterized by a diminished OXPHOS capacity have been described (Tuppen et al., 2010; Hejzlarova et al., 2014; Chinnery, 2015; Ng and Turnbull, 2015; Stewart and Chinnery, 2015; Xu et al., 2015).”
BackgroundDNA Mismatch Repair and Oxidative DNA Damage: Implications for Cancer Biology and Treatment
Bridge, G., Rashid, S., & Martin, S. A. (2014) · Cancers · doi:10.3390/cancers6031597 · Cited by 126 · see citing works
“Mitochondrial DNA (mtDNA) is particularly prone to oxidative DNA damage for a variety of reasons, including its close proximity to the electron transport chain, where the majority of ROS is generated, and the fact that it is not protected by histones [53].”
BackgroundClinical Validation of Copy Number Variant Detection from Targeted Next-Generation Sequencing Panels
Kerkhof, J., Schenkel, L. C., Reilly, J., McRobbie, S., Aref‐Eshghi, E., Stuart, A., Rupar, C. A., Adams, P. C., Hegele, R. A., Lin, H., et al. (2017) · Journal of Molecular Diagnostics · doi:10.1016/j.jmoldx.2017.07.004 · Cited by 127 · see citing works
“The traditional method to screen for common mitochondrial deletions is Southern blot and/or LR-PCR; however, the RD (minimum of 1000 ) and uniformity of the sequence coverage within an NGS run enable a precise estimation of the degree of mitochondrial CNV heteroplasmy to approximately 5% to 10%, meeting the minimum re…”
MethodThe Role of Mitochondrial DNA in Mediating Alveolar Epithelial Cell Apoptosis and Pulmonary Fibrosis
Kim, S.-J., Cheresh, P., Jablonski, R. P., Williams, D. B., & Kamp, D. W. (2015) · International Journal of Molecular Sciences · doi:10.3390/ijms160921486 · Cited by 121 · see citing works
“stress-induced mtDNA damage has a mutation rate that is 10-fold greater [18–23].”
BackgroundShu, L., Hu, C., Xu, M., Yu, J., He, H., Lin, J., Sha, H., Lü, B., Engelender, S., Guan, M., et al. (2021) · The EMBO Journal · doi:10.15252/embj.2020106283 · Cited by 124 · see citing works
“…diseases, ranging from severe inherited disorders to common late-onset diseases, including mitochondrial encephalopathy, lactic acidosis, and stroke-like episodes (MELAS), Kearns – Sayre syndrome (KSS), and Leber’s hereditary optic neuropathy (LHON) (Tuppen et al, 2010; El-Hattab et al, 2015).”
Graf, D. L. (2013) · American Malacological Bulletin · doi:10.4003/006.031.0106 · Cited by 122 · see citing works
“The absence of a robust phylogeny of freshwater mussel families hampers study of the origin and maintenance of mitochondrial heteroplasmy, which likely has broader implications than freshwater bivalve phylogeny (e.g., Tuppen et al. 2010).”
BackgroundMitochondrial DNA heteroplasmy in disease and targeted nuclease‐based therapeutic approaches
Nissanka, N., & Moraes, C. T. (2020) · EMBO Reports · doi:10.15252/embr.201949612 · Cited by 125 · see citing works
“The common deletion is a 4,977-bp deletion ( D 4,977) whose breakpoint is flanked by 13-bp direct repeats [67,74,83].”
Fragouli, E. (2020) · Elsevier eBooks · doi:10.1016/b978-0-12-816561-4.00009-0 · Cited by 122 · see citing works
Endocrine disorders in mitochondrial disease
Schaefer, A. M., Walker, M., Turnbull, D. M., & Taylor, R. W. (2013) · Molecular and Cellular Endocrinology · doi:10.1016/j.mce.2013.06.004 · Cited by 116 · see citing works
“Our own algorithms for the laboratory investigation of mitochondrial disease have been published extensively (Taylor et al., 2004; Tuppen et al., 2010; McFarland et al., 2010) and rely on”
MethodSelf-citationHeyat, M. B. B., Akhtar, F., Abbas, S. J., Al-Sarem, M., Alqarafi, A., Stalin, A., Abbasi, R., Muaad, A. Y. M., Lai, D., & Wu, K. (2022) · Biosensors · doi:10.3390/bios12060427 · Cited by 117 · see citing works
“Nevertheless, the use of FIR filters The advantages of FIR are: (i) they allow maintaining the exact linear phase between input and output signals, and (ii) the filter transfer function always remains stable with quantized coefficients.”
BackgroundMelo‐Ferreira, J., Vilela, J. E. R., Fonseca, M. M., da Fonseca, R. R., Boursot, P., & Alves, P. C. (2014) · Genome Biology and Evolution · doi:10.1093/gbe/evu059 · Cited by 115 · see citing works
“Key words: mitogenomics, Lepus, codon evolution, dN/dS, protein structure, positive selection.”
BackgroundThe Role of Mitochondrial Damage-Associated Molecular Patterns in Chronic Neuroinflammation
Bajwa, E., Pointer, C. B., & Klegeris, A. (2019) · Mediators of Inflammation · doi:10.1155/2019/4050796 · Cited by 111 · see citing works
Mitochondria in cancer: in the aspects of tumorigenesis and targeted therapy
Badrinath, N., & Yoo, S. Y. (2018) · Carcinogenesis · doi:10.1093/carcin/bgy148 · Cited by 108 · see citing works
“mtDNA mutations are associated with various diseases, especially those related with energy and metabolism such as neural and muscular syndromes (44).”
BackgroundDhapola, R., Sarma, P., Medhi, B., Prakash, A., & HariKrishnaReddy, D. (2021) · Molecular Neurobiology · doi:10.1007/s12035-021-02612-6 · Cited by 106 · see citing works
“mtDNA has higher rate of mutation than nuclear DNA hence is more susceptible to oxidative damage resulting in replication defects [30].”
BackgroundMetabolic dysregulation in monogenic disorders and cancer — finding method in madness
Erez, A., & DeBerardinis, R. J. (2015) · Nature Reviews Cancer · doi:10.1038/nrc3949 · Cited by 105 · see citing works
Reversing wrinkled skin and hair loss in mice by restoring mitochondrial function
Singh, B., Schoeb, T. R., Bajpai, P., Slominski, A. T., & Singh, K. K. (2018) · Cell Death and Disease · doi:10.1038/s41419-018-0765-9 · Cited by 107 · see citing works
Mitochondrial markers for identification and phylogenetic studies in insects – A Review
Mandal, S. D., Chhakchhuak, L., Gurusubramanian, G., & Kumar, N. S. (2014) · DNA Barcodes · doi:10.2478/dna-2014-0001 · Cited by 101 · see citing works
Association between mitochondrial DNA variations and Alzheimer's disease in the ADNI cohort
Lakatos, A., Derbeneva, O. A., Younes, D., Keator, D. B., Bakken, T. E., Lvova, M., Brandon, M. C., Guffanti, G., Reglődi, D., Saykin, A. J., et al. (2010) · Neurobiology of Aging · doi:10.1016/j.neurobiolaging.2010.04.031 · Cited by 97 · see citing works
Li, M., Rothwell, R., Vermaat, M., Wachsmuth, M., Schröder, R., Laros, J. F. J., van Oven, M., Bakker, P. I. W. D., Bovenberg, J. A., van Duijn, C. M., et al. (2016) · Genome Research · doi:10.1101/gr.203216.115 · Cited by 97 · see citing works
Leigh Syndrome: A Tale of Two Genomes
Bakare, A. B., Lesnefsky, E. J., & Iyer, S. (2021) · Frontiers in Physiology · doi:10.3389/fphys.2021.693734 · Cited by 101 · see citing works
Mitochondrial targeted meganuclease as a platform to eliminate mutant mtDNA in vivo
Zekonyte, U., Bacman, S. R., Smith, J., Shoop, W. K., Pereira, C. V., Tomberlin, G., Stewart, J. B., Jantz, D., & Moraes, C. T. (2021) · Nature Communications · doi:10.1038/s41467-021-23561-7 · Cited by 96 · see citing works
Pinho, B. R., Santos, M. M., Fonseca‐Silva, A., et al. (2013) · British Journal of Pharmacology · doi:10.1111/bph.12186 · Cited by 95 · see citing works
“Mitochondrial diseases present diverse clinical symptoms with the most common being neurological and cardiological manifestations, including cardiomyopathies and heart conduction defects (Tuppen et al., 2010; Berardo et al., 2011).”
BackgroundMitochondrial genome evolution in yeasts: an all-encompassing view
Freel, K. C., Friedrich, A., & Schacherer, J. (2015) · FEMS Yeast Research · doi:10.1093/femsyr/fov023 · Cited by 92 · see citing works
“Mitochondria are, in fact, implicated in a variety of human diseases (Holt, Harding and Morgan-Hughes 1988; Wallace 2005; Tuppen et al. 2010), and investigation of mutations in mitochondrial DNA (mtDNA), also principally using S.”
BackgroundMethodByrd, A. K., Zybailov, B. L., Maddukuri, L., Gao, J., Marecki, J. C., Jaiswal, M., Bell, M. R., Griffin, W. C., Reed, M. R., Chib, S., et al. (2016) · Journal of Biological Chemistry · doi:10.1074/jbc.m116.718478 · Cited by 94 · see citing works
“Deletions of mtDNA and the resulting loss of mitochondrial function are thought to be a major cause of cancer, aging, and genetic disorders (77).”
BackgroundAw, W. C., Towarnicki, S. G., Melvin, R. G., Youngson, N. A., Garvin, M. R., Hu, Y., Nielsen, S., Thomas, T., Pickford, R., Bustamante, S., et al. (2018) · PLoS Genetics · doi:10.1371/journal.pgen.1007735 · Cited by 95 · see citing works
A Multifunctional Envelope-type Nanodevice for Use in Nanomedicine: Concept and Applications
Nakamura, T., Akita, H., Yamada, Y., Hatakeyama, H., & Harashima, H. (2012) · Accounts of Chemical Research · doi:10.1021/ar200254s · Cited by 91 · see citing works
Fluorescent Probes as a Tool in Diagnostic and Drug Delivery Systems
Georgiev, N. I., Bakov, V. V., Anichina, K., & Bojinov, V. B. (2023) · Pharmaceuticals · doi:10.3390/ph16030381 · Cited by 93 · see citing works
Mitochondria in Acute Kidney Injury
Ralto, K. M., & Parikh, S. M. (2016) · Seminars in Nephrology · doi:10.1016/j.semnephrol.2016.01.005 · Cited by 89 · see citing works
“The threshold of mtDNA that must be mutated to cause disease can be variable, but typically is thought to be on the order of 60% to 90%.(42)”
BackgroundMitochondria and Heart Disease
Griffiths, E. J. (2011) · Advances in experimental medicine and biology · doi:10.1007/978-94-007-2869-1_11 · Cited by 90 · see citing works
Precision modeling of mitochondrial diseases in zebrafish via DdCBE-mediated mtDNA base editing
Guo, J., Zhang, X., Chen, X., et al. (2021) · Cell Discovery · doi:10.1038/s41421-021-00307-9 · Cited by 89 · see citing works
Ahier, A., Dai, C.-Y., Tweedie, A., Bezawork‐Geleta, A., Kirmes, I., & Zuryn, S. (2018) · Nature Cell Biology · doi:10.1038/s41556-017-0023-x · Cited by 79 · see citing works
Mitochondrial dysfunction: An emerging link in the pathophysiology of polycystic ovary syndrome
Shukla, P., & Mukherjee, S. (2020) · Mitochondrion · doi:10.1016/j.mito.2020.02.006 · Cited by 88 · see citing works
A yeast-based assay identifies drugs active against human mitochondrial disorders
Couplan, E., Aiyar, R. S., Kucharczyk, R., et al. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1101478108 · Cited by 87 · see citing works
“To date, seven point mutations in the mitochondrial ATP6 gene encoding subunit a of ATP synthase have been associated with a group of maternally inherited neurodegenerative syndromes with onset in early infancy (1, 3), including NARP (neuropathy, ataxia, and retinitis pigmentosa).”
BackgroundMechanisms of Mitochondrial DNA Deletion Formation
Nissanka, N., Minczuk, M. A., & Moraes, C. T. (2019) · Trends in Genetics · doi:10.1016/j.tig.2019.01.001 · Cited by 87 · see citing works
“Mutations affecting the genes required for mtDNA replication can lead to the accumulation of mtDNA point mutations or large-scale rearrangements as well as mtDNA depletion [31].”
BackgroundFaure, É., Delaye, L., Tribolo, S., Levasseur, A., Seligmann, H., & Barthélémy, R.-M. (2011) · Biology Direct · doi:10.1186/1745-6150-6-56 · Cited by 86 · see citing works
“Indeed, pathogenic point mutations and rearrangements of the mtDNA have been reported in a wide spectrum of clinical disorders, including neurodegenerative disease, aging and cancer (reviewed in [1,86]).”
BackgroundMitochondrial genome architecture in non‐alcoholic fatty liver disease
Sookoian, S. C., Flichman, D. M., Scian, R., Rohr, C., Dopazo, H., Gianotti, T. F., Martino, J. S., Castaño, G. O., & Pirola, C. J. (2016) · The Journal of Pathology · doi:10.1002/path.4803 · Cited by 86 · see citing works
“This finding is of particular relevance because protein expression is what ultimately dictates the phenotypic manifestation of any given mt-pathogenic mutation [24].”
Zhang, Z., Fan, J., Zhao, Y., Kang, Y., Du, J., & Peng, X. (2018) · ACS Sensors · doi:10.1021/acssensors.8b00082 · Cited by 84 · see citing works
Mitochondrial disorders: Challenges in diagnosis & treatment
Kumarasamy Thangaraj, K., Khan, N., Govindaraj, P., & Meena, A. (2015) · The Indian Journal of Medical Research · doi:10.4103/0971-5916.154489 · Cited by 86 · see citing works
Mitochondrial Replacement Therapy: Are Mito-nuclear Interactions Likely To Be a Problem?
Eyre‐Walker, A. (2017) · Genetics · doi:10.1534/genetics.116.196436 · Cited by 82 · see citing works
“…coadaptation; mito-nuclear incompatibility; mito-nuclear interaction; mitochondrial replacement therapy A number of diseases, such as Leber’s Hereditary Neurop-athy, Leigh’s syndrome, and Myoclonic Epilepsy with Ragged Red Fibers, are known to be caused by mutations in mtDNA (Tuppen et al. 2010).”
BackgroundMitochondrial inheritance in budding yeasts: towards an integrated understanding
Solieri, L. (2010) · Trends in Microbiology · doi:10.1016/j.tim.2010.08.001 · Cited by 80 · see citing works
Blakely, E. L., Yarham, J. W., Alston, C. L., Craig, K., Poulton, J., Brierley, C. K., Park, S., Dean, A., Xuereb, J. H., Anderson, K. N., et al. (2013) · Human Mutation · doi:10.1002/humu.22358 · Cited by 78 · see citing works
“Mutations in the mitochondrial genome (mtDNA) give rise to a clinically and biochemically heterogeneous range of genetic disorders affecting children and, perhaps more significantly, adults [Schon et al., 2012; Tuppen et al., 2010].”
BackgroundSelf-citationChuah, J., Matsugami, A., Hayashi, F., & Numata, K. (2016) · Biomacromolecules · doi:10.1021/acs.biomac.6b01056 · Cited by 80 · see citing works
Mitochondrial Gene Expression and Beyond—Novel Aspects of Cellular Physiology
Kotrys, A. V., & Szczęsny, R. J. (2019) · Cells · doi:10.3390/cells9010017 · Cited by 81 · see citing works
Mitochondrial Mechanisms of Neuromuscular Junction Degeneration with Aging
Anagnostou, M., & Hepple, R. T. (2020) · Cells · doi:10.3390/cells9010197 · Cited by 81 · see citing works
Mitochondrial DNA disease: new options for prevention
Craven, L., Elson, J. L., Irving, L., Tuppen, H. A. L., Lister, L., Greggains, G. D., Byerley, S., Murdoch, A. P., Herbert, M., & Turnbull, D. M. (2011) · Human Molecular Genetics · doi:10.1093/hmg/ddr373 · Cited by 78 · see citing works
Self-citationMitochondrial DNA Rearrangements in Health and Disease-A Comprehensive Study
Damas, J., Samuels, D. C., Carneiro, J., Amorim, A., & Pereira, F. (2013) · Human Mutation · doi:10.1002/humu.22452 · Cited by 77 · see citing works
“In diseased tissues, mtDNA deletions are usually found at high frequencies for having exceeded the threshold level necessary to cause the mitochondrial HUMAN MUTATION, Vol. 35, No. 1, 1–14, 2014 11 dysfunction [Park and Larsson, 2011; Schon et al., 2012; Tuppen et al., 2010].”
BackgroundFrom Serendipity to Mitochondria-Targeted Nanocarriers
Weissig, V. (2011) · Pharmaceutical Research · doi:10.1007/s11095-011-0556-9 · Cited by 79 · see citing works
“As of today, more than 250 pathogenic mtDNA mutations have been identified ( 52 )w hich cause more than 350 distinct mitochondrial disorders (53), with the majority displaying either neurodegenerative or neuromuscular symptoms.”
BackgroundNext generation molecular diagnosis of mitochondrial disorders
Wong, L. C. (2013) · Mitochondrion · doi:10.1016/j.mito.2013.02.001 · Cited by 75 · see citing works
Almalki, A. A., Alston, C. L., Parker, A., Simonic, I., Mehta, S. G., He, L., Reza, M., Oliveira, J. M. A., Lightowlers, R. N., McFarland, R., et al. (2013) · Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease · doi:10.1016/j.bbadis.2013.10.008 · Cited by 76 · see citing works
“Hence, mutations in either themitochondrial genome (mtDNA) [1,2] or the nuclear DNA [3] can cause defects in mitochondrial protein synthesis resulting in a variety of mitochondrial disease phenotypes affecting both children and adults.”
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Chateigner‐Boutin, A., & Small, I. (2011) · Wiley Interdisciplinary Reviews - RNA · doi:10.1002/wrna.72 · Cited by 74 · see citing works
Kemp, J. P., Smith, P., Pyle, A., Neeve, V. C. M., Tuppen, H. A. L., Schara, U., Talim, B., Topaloğlu, H., Holinski‐Feder, E., Abicht, A., et al. (2010) · Brain · doi:10.1093/brain/awq320 · Cited by 74 · see citing works
“…been associated with mitochondrial DNA rearrangements (e.g. Kearns–Sayre syndrome) that affect mitochondrial transfer RNA and/or ribosomal RNA genes (Tuppen et al., 2010) leading to an overall decrease in respiratory complex function via defective gene transcription and translation, or single…”
BackgroundInfluentialSelf-citationSomatic Mitochondrial DNA Mutations in Human Cancers
Yu, M. (2012) · Advances in clinical chemistry · doi:10.1016/b978-0-12-394384-2.00004-8 · Cited by 73 · see citing works
Castellana, S., Rónai, J., & Mazza, T. (2014) · Human Mutation · doi:10.1002/humu.22720 · Cited by 73 · see citing works
“…removed from population by purifying selection, as evidenced from the mutator mice (Stewart, et al., 2008), several have been identified during the last 30 years by clinical genetics studies, ranging from single nucleotide polymorphisms (SNPs) to wide genome rearrangements (Tuppen, et al., 2010).”
BackgroundChao, Y.-H., Robak, L. A., Xia, F., Koenig, M. K., Adesina, A. M., Bacino, C. A., Scaglia, F., Bellen, H. J., & Wangler, M. F. (2016) · Human Molecular Genetics · doi:10.1093/hmg/ddw059 · Cited by 73 · see citing works
- Authors
- Tuppen, H. A. L., Blakely, E. L., Turnbull, D. M., & Taylor, R. W.
- Affiliations
- Newcastle University (GB)
- Corresponding author
- Taylor, Robert W.
- Venue
- Biochimica et Biophysica Acta (BBA) - Bioenergetics
- Publisher
- Elsevier BV
- Published
- 2010-02
- Volume
- 1797
- Issue
- 2
- Pages
- 113-128
- ISSN
- 0005-2728 (ISSN-L)
- OpenAlex
- W1997422422
- Semantic Scholar
- b52cea89f7d29e4137fb6e7175963cf0d992f736
- Cited by
- 676
- References
- 272
- Citations by year
- 2026: 19 · 2025: 34 · 2024: 41 · 2023: 32 · 2022: 35 · 2021: 50 · 2020: 51 · 2019: 46 · 2018: 81 · 2017: 44 · 2016: 49 · 2015: 32 · 2014: 24 · 2013: 33 · 2012: 38
- FWCI
- 2.63
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Licence
- Locations
- Biochimica et Biophysica Acta (BBA) - Bioenergetics (publishedVersion)
- PubMed (publishedVersion)
- Newcastle University ePrints (Newcastle Univesity)
- Funders
- Wellcome Trust (074454)
- Sparks
- Muscular Dystrophy UK
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Mitochondrial Function and Pathology
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Clinical Biochemistry › Metabolism and Genetic Disorders
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genomics and Rare Diseases
- Keywords
- mitochondrial DNA mutations, mitochondrial disease, oxidative phosphorylation defects, mitochondrial genetics, nuclear-encoded mitochondrial proteins, mitochondrial disease diagnosis, mitochondrial disease therapy, disease models
- MeSH terms
- DNA, Mitochondrial, Humans, Mutation, Mitochondrial Diseases
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