Cited by 213Drug-Induced Hepatotoxicity and ProtectionPharmacogenetics and Drug MetabolismLiver physiology and pathology

Oxygen-mediated enhancement of primary hepatocyte metabolism, functional polarization, gene expression, and drug clearance

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Kidambi, Srivatsan, Yarmush, Rubin S., Novik, Eric, Chao, Piyun, Yarmush, Martin L., Nahmias, Yaakov·2009·Proceedings of the National Academy of Sciences

Abstract

The liver is a major site for the metabolism of xenobiotic compounds due to its abundant level of phase I/II metabolic enzymes. With the cost of drug development escalating to over $400 million/drug there is an urgent need for the development of rigorous models of hepatic metabolism for preclinical screening of drug clearance and hepatotoxicity. Here, we present a microenvironment in which primary human and rat hepatocytes maintain a high level of metabolic competence without a long adaptation period. We demonstrate that co-cultures of hepatocytes and endothelial cells in serum-free media seeded under 95% oxygen maintain functional apical and basal polarity, high levels of cytochrome P450 activity, and gene expression profiles on par with freshly isolated hepatocytes. These oxygenated co-cultures demonstrate a remarkable ability to predict in vivo drug clearance rates of both rapid and slow clearing drugs with an R 2 of 0.92. Moreover, as the metabolic function of oxygenated co-cultures stabilizes overnight, preclinical testing can be carried out days or even weeks before other culture methods, significantly reducing associated labor and cost. These results are readily extendable to other culture configurations including three-dimensional culture, bioreactor studies, as well as microfabricated co-cultures.

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  • Oxygenated or microfabricated co-cultures allow HHs to retain metabolic function for a few weeks, but these cells lose their proliferative capacity.

    “The oxygenated or microfabricated co-cultures have been reported to allow HHs to retain metabolic function for a few weeks; however, these cells lose their proliferative capacity (Khetani and Bhatia, 2008; Kidambi et al., 2009”

    From In Vitro Expansion of Primary Human Hepatocytes with Efficient Liver Repopulation Capacity (2018) · cites this paper as Kidambi et al., 2009

    The Discussion reports high metabolic activity in oxygenated co-cultures of human and rat hepatocytes. The Results document metabolic measurements through day 7 and human-hepatocyte morphology through day 9, but do not establish retained metabolic function for a few weeks. No passage found reports that these cells lose proliferative capacity. (LLM, conf=0.87)

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  1. [2]Ballet F. Hepatotoxicity in drug development: Detection, significance, and solutions. J Hepatol. 1997;26:26–36. doi: 10.1016/s0168-8278(97)80494-1. [DOI] [PubMed] [Google Scholar] · DOI
  2. [3]Pritchard JF, et al. Making better drugs: Decision gates in non-clinical drug development. Nat Rev Drug Discov. 2003;2:542–553. doi: 10.1038/nrd1131. [DOI] [PubMed] [Google Scholar] · DOI
  3. [4]Lau YY, Sapidou E, Cui X, White RE, Cheng K-C. Development of a novel in vitro model to predict hepatic clearance using fresh, cryopreserved, and sandwich-cultured hepatocytes. Drug Metab Dispos. 2002;30:1446–1454. doi: 10.1124/dmd.30.12.1446. [DOI] [PubMed] [Google Scholar] · DOI
  4. [5]Gebhardt R, et al. New hepatocyte in vitro systems for drug metabolism: Metabolic capacity and recommendations for application in basic research and drug development, standard operation procedures. Drug Metab Rev. 2003;35:145–213. doi: 10.1081/dmr-120023684. [DOI] [PubMed] [Google Scholar] · DOI
  5. [6]Yarmush ML, et al. Hepatic tissue engineering Development of critical technologies. Ann N Y Acad Sci. 1992;665:238–252. doi: 10.1111/j.1749-6632.1992.tb42588.x. [DOI] [PubMed] [Google Scholar] · DOI
  6. [7]Nahmias Y, Berthiaume F, Yarmush ML. Integration of technologies for hepatic tissue engineering. In: Lee K, Kaplan D, editors. Advances in Biochemical Engineering Biotechnology. Vol. 103. Berlin Heidelberg: Springer; 2006. pp. 309–329. [DOI] [PubMed] [Google Scholar]
  7. [8]Bhatia SN, Balis UJ, Yarmush ML, Toner M. Effect of cell-cell interactions in preservation of cellular phenotype: Cocultivation of hepatocytes and non parenchymal cells. FASEB J. 1999;13:1883–1900. doi: 10.1096/fasebj.13.14.1883. [DOI] [PubMed] [Google Scholar] · DOI · Paper page
  8. [9]Dunn JC, Yarmush ML, Koebe HG, Tompkins RG. Hepatocyte function and extracellular matrix geometry: Long-term culture in a sandwich configuration. FASEB J. 1989;3:174–177. doi: 10.1096/fasebj.3.2.2914628. [DOI] [PubMed] [Google Scholar] · DOI
  9. [11]Landry J, Bernier D, Ouellet C, Goyette R, Marceau N. Spheroidal aggregate culture of rat liver cells: Histotypic reorganization, biomatrix deposition, and maintenance of functional activities. J Cell Biol. 1985;101:914–923. doi: 10.1083/jcb.101.3.914. [DOI] [PMC free article] [PubMed] [Google Scholar] · DOI
  10. [12]Bhatia SN, Yarmush ML, Toner M. Controlling cell interactions by micropatterning in co-cultures: Hepatocytes and 3T3 fibroblasts. J Biomed Mater Res. 1997;34:189–199. doi: 10.1002/(sici)1097-4636(199702)34:2<189::aid-jbm8>3.0.co;2-m. [DOI] [PubMed] [Google Scholar] · DOI
  11. [13]Morin O, Normand C. Long-term maintenance of hepatocyte functional activity in co-culture: Requirements for sinusoidal endothelial cells and dexamethasone. J Cell Physiol. 1986;129:103–110. doi: 10.1002/jcp.1041290115. [DOI] [PubMed] [Google Scholar] · DOI
  12. [14]Khetani SR, Bhatia SN. Microscale culture of human liver cells for drug development. Nat Biotechnol. 2007 doi: 10.1038/nbt1361. [DOI] [PubMed] [Google Scholar] · DOI · Paper page
  13. [15]Stevens KM. Oxygen requirements for liver cells in vitro. Nature. 1965;206:199. doi: 10.1038/206199a0. [DOI] [PubMed] [Google Scholar] · DOI
  14. [16]Nahmias Y, et al. A novel formulation of oxygen-carrying matrix enhances liver-specific function of cultured hepatocytes. FASEB J. 2006;20:2531–2533. doi: 10.1096/fj.06-6192fje. [DOI] [PubMed] [Google Scholar] · DOI · Paper page
  15. [17]Balis UJ, et al. Oxygen consumption characteristics of porcine hepatocytes. Metab Eng. 1999;1:49–62. doi: 10.1006/mben.1998.0105. [DOI] [PubMed] [Google Scholar] · DOI
  16. [18]Rotem A, Toner M, Tompkins RG, Yarmush ML. Oxygen uptake rates in cultured rat hepatocytes. Biotechnol Bioeng. 1992;40:1286–1291. doi: 10.1002/bit.260401020. [DOI] [PubMed] [Google Scholar] · DOI
  17. [19]Rotem A, et al. Oxygen is a factor determining in vitro tissue assembly: Effects on attachment and spreading of hepatocytes. Biotechnol Bioeng. 1994;43:654–660. doi: 10.1002/bit.260430715. [DOI] [PubMed] [Google Scholar] · DOI
  18. [20]Tilles AW, Baskaran H, Roy P, Yarmush ML, Toner M. Effects of oxygenation and flow on the viability and function of rat hepatocytes cocultured in a microchannel flat-plate bioreactor. Biotechnol Bioeng. 2001;73:379–389. doi: 10.1002/bit.1071. [DOI] [PubMed] [Google Scholar] · DOI
  19. [21]Yanagi K, Ohshima N. Improvement of metabolic performance of cultured hepatocytes by high oxygen tension in the atmosphere. Artificial Organs. 2001;25:1–6. doi: 10.1046/j.1525-1594.2001.025001001.x. [DOI] [PubMed] [Google Scholar] · DOI
  20. [22]Suleiman SA, Stevens JB. The effect of oxygen tension on rat hepatocytes in short-term culture. In Vitro Cell Dev Biol. 1987;23:332–338. doi: 10.1007/BF02620989. [DOI] [PubMed] [Google Scholar] · DOI
  21. [23]Enat R, et al. Hepatocyte proliferation in vitro: Its dependence on the use of serum-free hormonally defined medium and substrata of extracellular matrix. Proc Natl Acad Sci USA. 1984;81:1411–1415. doi: 10.1073/pnas.81.5.1411. [DOI] [PMC free article] [PubMed] [Google Scholar] · DOI
  22. [24]Fujita M, et al. Glycosaminoglycans and proteoglycans induce gap junction expression and restore transcription of tissue-specific mRNAs in primary liver cultures. Hepatology. 1987;7:1S–9S. doi: 10.1002/hep.1840070702. [DOI] [PubMed] [Google Scholar] · DOI
  23. [25]Turncliff RZ, Tian X, Brouwer KLR. Effect of culture conditions on the expression and function of Bsep, Mrp2, and Mdrla/b in sandwich-cultured rat hepatocytes. Biochem Pharmacol. 2006;71:1520–1529. doi: 10.1016/j.bcp.2006.02.004. [DOI] [PubMed] [Google Scholar] · DOI
  24. [26]Dam GB, et al. 3-O-Sulfated oligosaccharide structures are recognized by anti-heparan sulfate antibody HS4C3. J Biol Chem. 2006;281:4654–4662. doi: 10.1074/jbc.M506357200. [DOI] [PubMed] [Google Scholar] · DOI
  25. [27]Wasan KM, Brocks DR, Lee SD, Sachs-Barrable K, Thornton SJ. Impact of lipoproteins on the biological activity and disposition of hydrophobic drugs: Implications for drug discovery. Nat Rev Drug Discov. 2008;7:84–99. doi: 10.1038/nrd2353. [DOI] [PubMed] [Google Scholar] · DOI
  26. [28]MacArthur JM, et al. Liver heparan sulfate proteoglycans mediate clearance of triglyceride-rich lipoproteins independently of LDL receptor family members. J Clin Invest. 2007;117:153–164. doi: 10.1172/JCI29154. [DOI] [PMC free article] [PubMed] [Google Scholar] · DOI · Paper page
  27. [29]Khetani SR, Szulgit G, Rio JAD, Barlow C, Bhatia SN. Exploring interactions between rat hepatocytes and nonparenchymal cells using gene expression profiling. Hepatology. 2004;40:545–554. doi: 10.1002/hep.20351. [DOI] [PubMed] [Google Scholar] · DOI
  28. [30]Thummel KE, Shen DD, Isoherranen N, Smith HE. Appendix II. Design and Optimization of Dosage Regimens: Pharmacokinetic Data. In: Brunton LL, editor. Goodman & Gilman's The Pharmacological Basis of Therapeutics. 11th Ed. McGraw-Hill Professional; 2005. p. pp 1984. [Google Scholar]
  29. [31]Lam JL, Benet LZ. Hepatic microsome studies are insufficient to characterize in vivo hepatic metabolic clearance and metabolic drug-drug interactions: Studies of digoxin metabolism in primary rat hepatocytes versus microsomes. Drug Metab Dispos. 2004;32:1311–1316. doi: 10.1124/dmd.32.11.. [DOI] [PubMed] [Google Scholar] · DOI
  30. [32]Benet LZ, Cumminsa CL, Wua CY. Unmasking the dynamic interplay between efflux transporters and metabolic enzymes. Int J Pharm. 2004;277:3–9. doi: 10.1016/j.ijpharm.2002.12.002. [DOI] [PubMed] [Google Scholar] · DOI
  31. [33]Custodio JM, Wu C-Y, Benet LZ. Predicting drug disposition, absorption/elimination/transporter interplay and the role of food on drug absorption. Adv Drug Deliv Rev. 2008;60:717–733. doi: 10.1016/j.addr.2007.08.043. [DOI] [PMC free article] [PubMed] [Google Scholar] · DOI
  32. [34]Jurima-rometa M, Huanga HS, Beckb DJ, Li AP. Evaluation of drug interactions in intact hepatocytes: Inhibitors of terfenadine metabolism. Toxicol in Vitro. 1996;10:655–663. doi: 10.1016/s0887-2333(96)00056-2. [DOI] [PubMed] [Google Scholar] · DOI
  33. [35]Haehner T, Refaie MO, Müller-Enoch D. Drug-drug interactions evaluated by a highly active reconstituted native human cytochrome P4503A4 and human NADPH-cytochrome P450 reductase system. Arzneimittelforschung. 2004;54:78–83. doi: 10.1055/s-0031-1296940. [DOI] [PubMed] [Google Scholar] · DOI
  34. [36]Ho PC, Saville DJ, Wanwimolruk S. Inhibition of human CYP3A4 activity by grapefruit flavonoids, furanocoumarins and related compounds. J Pharm Pharm Sci. 2001;4:217–227. [PubMed] [Google Scholar]
  35. [37]Benet LZ. There are no useful CYP3A probes that quantitatively predict the in vivo kinetics of other CYP3A substrates and no expectation that one will be found. Mol Interv. 2005;5:79–83. doi: 10.1124/mi.5.2.5. [DOI] [PubMed] [Google Scholar] · DOI
  36. [38]Murray KF, Messner DJ, Kowdley KV. Johnson LR, editor. Mechanisms of hepatocyte detoxification. Physiology of the gastrointestinal tract. (4 Ed.) 2006;Vol 1:1483–1504. (Academic) [Google Scholar]
  37. [39]DiMasi JA. The value of improving the productivity of the drug development process: faster times and better decisions. Pharmacoeconomics. 2002;20:1–10. doi: 10.2165/00019053-200220003-00001. [DOI] [PubMed] [Google Scholar] · DOI
  38. [40]DiMasi JA, Hansenb RW, Grabowskic HG. The price of innovation: New estimates of drug development costs. J Health Econ. 2003;22:151–185. doi: 10.1016/S0167-6296(02)00126-1. [DOI] [PubMed] [Google Scholar] · DOI · Paper page
  39. [41]Uygun K, Matthew HWT, Huang Y. Investigation of metabolic objectives in cultured hepatocytes. Biotechnol Bioeng. 2007;97:622–637. doi: 10.1002/bit.21237. [DOI] [PubMed] [Google Scholar] · DOI
  40. [42]Cho CH, et al. Oxygen uptake rates and liver-specific functions of hepatocyte and 3T3 fibroblast co-cultures. Biotechnol Bioeng. 2007;97:188–199. doi: 10.1002/bit.21225. [DOI] [PubMed] [Google Scholar] · DOI
  41. [43]Dunn JCY, Tompkins RG, Yarmush ML. Long-term in vitro function of adult hepatocytes in a collagen sandwich configuration. Biotechnol Prog. 1991;7:237–245. doi: 10.1021/bp00009a007. [DOI] [PubMed] [Google Scholar] · DOI
  42. [44]Nahmias Y, Casali M, Barbe L, Berthiaume F, Yarmush ML. Liver endothelial cells promote LDL-R expression and the uptake of HCV-like particles in primary rat and human hepatocytes. Hepatology. 2006;43:257–265. doi: 10.1002/hep.21016. [DOI] [PubMed] [Google Scholar] · DOI

Cited by

Sorted by citations

Authors
Kidambi, S., Yarmush, R. S., Novik, E., Chao, P., Yarmush, M. L., & Nahmias, Y.
Affiliations
  • Harvard University (US)
  • HμREL Corporation, Beverly Hills, CA 90211; and
Venue
Proceedings of the National Academy of Sciences
Published
2009-09-15
Volume
106
Issue
37
Pages
15714-15719
ISSN
  • 0027-8424 (ISSN-L)
  • 1091-6490
OpenAlex
W2072582246
Cited by
213
References
2
Citations by year
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FWCI
12.57
Type
journal article
Language
en
Open access
Locations
  • Proceedings of the National Academy of Sciences (publishedVersion)
  • PubMed Central (publishedVersion)
  • PubMed (publishedVersion)
  • Lincoln (University of Nebraska) (submittedVersion)
Funders
  • National Institutes of Health
  • National Institute of Diabetes and Digestive and Kidney Diseases (K01DK080241, P30DK040561)
  • National Institute of Biomedical Imaging and Bioengineering (P41EB002503)
Topics
  • Life Sciences › Pharmacology, Toxicology and Pharmaceutics › Pharmacology › Drug-Induced Hepatotoxicity and Protection
  • Life Sciences › Pharmacology, Toxicology and Pharmaceutics › Pharmacology › Pharmacogenetics and Drug Metabolism
  • Health Sciences › Medicine › Hepatology › Liver physiology and pathology
Keywords
primary hepatocytes, hepatocyte polarization, cytochrome P450 activity, drug clearance prediction, hepatic metabolism, hepatotoxicity screening, gene expression, serum-free culture, 3D cell culture
MeSH terms
Animals, Cells, Cultured, Cytochrome P-450 Enzyme System, Drug Interactions, Pharmaceutical Preparations, Humans, Oxygen, Gene Expression, Cell Polarity, Culture Media, Serum-Free, Coculture Techniques, Hepatocytes, Tissue Engineering, Endothelial Cells, Mice, Rats, Drug Discovery

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