Cited by 162Cancer-related Molecular PathwaysMitochondrial Function and PathologyCell death mechanisms and regulation

Pyrimidine Biosynthesis Links Mitochondrial Respiration to the P53 Pathway

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Khutornenko, Anastasia A., Roudko, Vladimir V., Chernyak, Boris V., Vartapetian, Andrey B., Chumakov, Peter M., Evstafieva, Alexandra G.·2010·Proceedings of the National Academy of Sciences

Abstract

While many functions of the p53 tumor suppressor affect mitochondrial processes, the role of altered mitochondrial physiology in a modulation of p53 response remains unclear. As mitochondrial respiration is affected in many pathologic conditions such as hypoxia and intoxications, the impaired electron transport chain could emit additional p53-inducing signals and thereby contribute to tissue damage. Here we show that a shutdown of mitochondrial respiration per se does not trigger p53 response, because inhibitors acting in the proximal and distal segments of the respiratory chain do not activate p53. However, strong p53 response is induced specifically after an inhibition of the mitochondrial cytochrome bc1 (the electron transport chain complex III). The p53 response is triggered by the deficiency in pyrimidines that is developed due to a suppression of the functionally coupled mitochondrial pyrimidine biosynthesis enzyme dihydroorotate dehydrogenase (DHODH). In epithelial carcinoma cells the activation of p53 in response to mitochondrial electron transport chain complex III inhibitors does not require phosphorylation of p53 at Serine 15 or up-regulation of p14 ARF . Instead, our data suggest a contribution of NQO1 and NQO2 in stabilization of p53 in the nuclei. The results establish the deficiency in pyrimidine biosynthesis as the cause of p53 response in the cells with impaired mitochondrial respiration.

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Crossref · 10.1073/pnas.0910885107

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  • The inhibition of complexes III and IV affects the dihydroorotate dehydrogenase pathway involved in ubiquinone-mediated de novo pyrimidine synthesis.

    “The inhibition of complexes III and IV affects the dihydroorotate dehydrogenase pathway involved in ubiquinone-mediated de novo pyrimidine synthesis [49,50,51].”

    From Proliferating Astrocytes in Primary Culture Do Not Depend upon Mitochondrial Respiratory Complex I Activity or Oxidative Phosphorylation (2023) · cites this paper as [51]

    The Results show that complex III inhibition impairs DHODH-linked pyrimidine biosynthesis, but explicitly report that the complex IV inhibitor KCN did not affect pyrimidine levels. The Discussion likewise says KCN did not affect pyrimidine nucleotide levels, contrary to the claim that inhibition of both complexes affects this pathway. (LLM, conf=0.88)

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  1. [21]Chumakov PM (2007) Versatile functions of p53 protein in multicellular organisms. Biochemistry-Moscow 72(13):1399 -1421.
  2. [23]Sherr CJ, Weber JD (2000) The ARF/p53 pathway. Curr Opin Genet Dev 10(1):94 -99.
  3. [25]Gong X, Kole L, Iskander K, Jaiswal AK (2007) NRH: Quinone oxidoreductase 2 and NAD(P)H:quinone oxidoreductase 1 protect tumor suppressor p53 against 20s proteasomal degradation leading to stabilization and activation of p53. Cancer Res 67(11):5380 -5388.
  4. [26]Linke SP, Clarkin KC, Di Leonardo A, Tsou A, Wahl GM (1996) A reversible, p53-dependent G0/G1 cell cycle arrest induced by ribonucleotide depletion in the absence of detectable DNA damage. Genes Dev 10(8):934 -947.
  5. [27]Agarwal ML, et al. (1998) A p53-dependent S-phase checkpoint helps to protect cells from DNA damage in response to starvation for pyrimidine nucleotides. Proc Natl Acad Sci USA 95(25):14775 -14780.
  6. [28]Agarwal MK, et al. (2006) Macrophage inhibitory cytokine 1 mediates a p53- dependent protective arrest in S phase in response to starvation for DNA precursors. Proc Natl Acad Sci USA 103(44):16278 -16283.
  7. [29]Seidita G, Polizzi D, Costanzo G, Costa S, DiLeonardo A (2000) Differential gene expression in p53-mediated G(1) arrest of human fibroblasts after gammairradiation or N-phosphoacetyl-L-aspartate treatment. Carcinogenesis 21(12):2203 -2210.
  8. [30]Hastak K, et al. (2008) DNA synthesis from unbalanced nucleotide pools causes limited DNA damage that triggers ATR-CHK1-dependent p53 activation. Proc Natl Acad Sci USA 105(17):6314 -6319.
  9. [31]Buryanovskyy L, et al. (2004) Crystal structure of quinone reductase 2 in complex with resveratrol. Biochemistry 43(36):11417 -11426.
  10. [32]Ashcroft M, Taya Y, Vousden KH (2000) Stress signals utilize multiple pathways to stabilize p53. Mol Cell Biol 20(9):3224 -3233.
  11. [33]Derheimer FA, et al. (2007) RPA and ATR link transcriptional stress to p53. Proc Natl Acad Sci USA 104(31):12778 -12783.
  12. [34]Ljungman M (2007) The transcription stress response. Cell Cycle 6(18):2252 -2257.
  13. [36]Shchepina LA, et al. (2002) Oligomycin, inhibitor of the F0 part of H þ -ATPsynthase, suppresses the TNF-induced apoptosis. Oncogene 21(53):8149 -8157.
  14. [37]Sukhacheva EA, et al. (2002) Sensing prothymosin alpha origin, mutations and conformation with monoclonal antibodies. J Immunol Methods 266(1-2):185 -196.
  15. [38]Zakharova NI, et al. (2008) [Influence of prothymosin alpha and its mutants on activity of the p53 tumor suppressor]. Mol Biol (Mosk) 42(4):673 -684.
  16. [39]Karapetian RN, et al. (2005) Nuclear oncoprotein prothymosin alpha is a partner of Keap1: Implications for expression of oxidative stress-protecting genes. Mol Cell Biol 25(3):1089 -1099.

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Authors
Khutornenko, A. A., Roudko, V. V., Chernyak, B. V., Vartapetian, A. B., Chumakov, P. M., & Evstafieva, A. G.
Affiliations
  • Lomonosov Moscow State University (RU)
  • Engelhardt Institute of Molecular Biology (RU)
Corresponding author
Chumakov, Peter M.
Venue
Proceedings of the National Academy of Sciences
Published
2010-06-21
Volume
107
Issue
29
Pages
12828-12833
ISSN
  • 0027-8424 (ISSN-L)
  • 1091-6490
OpenAlex
W2008511202
Cited by
162
References
4
Citations by year
2026: 10 · 2025: 7 · 2024: 5 · 2023: 8 · 2022: 13 · 2021: 22 · 2020: 17 · 2019: 11 · 2018: 10 · 2017: 7 · 2016: 10 · 2015: 7 · 2014: 9 · 2013: 9 · 2012: 7
FWCI
4.03
Type
journal article
Language
en
Open access
Locations
  • Proceedings of the National Academy of Sciences (publishedVersion)
  • PubMed Central (publishedVersion)
  • PubMed (publishedVersion)
Funders
  • Howard Hughes Medical Institute (55005603)
  • Russian Foundation for Basic Research
  • National Institutes of Health
  • Russian Academy of Sciences (08-04)
  • National Institute on Aging (AG025276)
  • National Cancer Institute (CA104903, R01CA104903)
Topics
  • Health Sciences › Medicine › Oncology › Cancer-related Molecular Pathways
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Mitochondrial Function and Pathology
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Cell death mechanisms and regulation
Keywords
p53 activation, mitochondrial respiration, pyrimidine synthesis, dihydroorotate dehydrogenase, cytochrome bc1 complex, electron transport inhibition, NQO1, NQO2, p53 stabilization, p14ARF, mitochondrial dysfunction
MeSH terms
Leflunomide, Dihydroorotate Dehydrogenase, Humans, Isoxazoles, Methacrylates, Mitochondria, Potassium Cyanide, Protein Processing, Post-Translational, Pyrimidines, Quinone Reductases, Thiazoles, Electron Transport Complex III, Signal Transduction, Up-Regulation, Tumor Suppressor Protein p53, NAD(P)H Dehydrogenase (Quinone), Apoptosis, Reactive Oxygen Species, Cell Respiration, Oxidoreductases Acting on CH-CH Group Donors, Cell Line, Tumor, Proteasome Endopeptidase Complex, Membrane Potential, Mitochondrial

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