Mechanism of RNA stabilization and translational activation by a pentatricopeptide repeat protein

RNA-binding proteins: modular design for efficient function

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TPR proteins: the versatile helix

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The PPR motif – a TPR-related motif prevalent in plant organellar proteins

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Pentatricopeptide repeat proteins: a socket set for organelle gene expression

Schmitz‐Linneweber, C., & Small, I. (2008) · Trends in Plant Science · doi:10.1016/j.tplants.2008.10.001 · Cited by 825 · see citing works

Modular Recognition of RNA by a Human Pumilio-Homology Domain

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Chloroplast RNA Metabolism

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The radish Rfo restorer gene of Ogura cytoplasmic male sterility encodes a protein with multiple pentatricopeptide repeats

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Genetic characterization of a pentatricopeptide repeat protein gene, orf687, that restores fertility in the cytoplasmic male‐sterile Kosena radish

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GadY, a Small-RNA Regulator of Acid Response Genes inEscherichia coli

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Site‐specific binding of a PPR protein defines and stabilizes 5′ and 3′ mRNA termini in chloroplasts

Pfalz, J., Bayraktar, O. A., Prikryl, J., et al. (2009) · The EMBO Journal · doi:10.1038/emboj.2009.121 · Cited by 342 · see citing works

A Pentatricopeptide Repeat Protein Facilitates the trans- Splicing of the Maize Chloroplast rps12 Pre-mRNA

Schmitz‐Linneweber, C., Williams-Carrier, R. E., Voelker, P., et al. (2006) · The Plant Cell · doi:10.1105/tpc.106.046110 · Cited by 299 · see citing works

HCF152, an Arabidopsis RNA Binding Pentatricopeptide Repeat Protein Involved in the Processing of Chloroplast psbB-psbT-psbH-petB-petD RNAs

Meierhoff, K., Felder, S., Nakamura, T., Bechtold, N., & Schuster, G. (2003) · The Plant Cell · doi:10.1105/tpc.010397 · Cited by 283 · see citing works

The Pentatricopeptide Repeat Gene OTP43 Is Required for trans -Splicing of the Mitochondrial nad1 Intron 1 in Arabidopsis thaliana

de Longevialle, A. F., Meyer, E. H., Andrés, C., Taylor, N. L., Claire Lurin, A., Millar, A. H., & Small, I. (2007) · The Plant Cell · doi:10.1105/tpc.107.054841 · Cited by 276 · see citing works

RNA Immunoprecipitation and Microarray Analysis Show a Chloroplast Pentatricopeptide Repeat Protein to Be Associated with the 5′ Region of mRNAs Whose Translation It Activates

Schmitz‐Linneweber, C., Williams-Carrier, R. E., & Barkan, A. (2005) · The Plant Cell · doi:10.1105/tpc.105.034454 · Cited by 260 · see citing works

Activation of gene expression by small RNA

Fröhlich, K. S., & Vogel, J. (2009) · Current Opinion in Microbiology · doi:10.1016/j.mib.2009.09.009 · Cited by 253 · see citing works

A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms.

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ABA overly-sensitive 5 (ABO5), encoding a pentatricopeptide repeat protein required for cis-splicing of mitochondrial nad2 intron 3, is involved in the abscisic acid response in Arabidopsis

Liu, Y., He, J., Chen, Z., Ren, X., Hong, X., & Gong, Z. (2010) · The Plant Journal · doi:10.1111/j.1365-313x.2010.04280.x · Cited by 211 · see citing works

A Pentatricopeptide Repeat Protein Is a Site Recognition Factor in Chloroplast RNA Editing

Okuda, K., Nakamura, T., Sugita, M., et al. (2006) · Journal of Biological Chemistry · doi:10.1074/jbc.m608184200 · Cited by 203 · see citing works

The Pentatricopeptide Repeat Protein PPR5 Stabilizes a Specific tRNA Precursor in Maize Chloroplasts

Beick, S., Schmitz‐Linneweber, C., Williams-Carrier, R. E., et al. (2008) · Molecular and Cellular Biology · doi:10.1128/mcb.00563-08 · Cited by 179 · see citing works

Suppression mechanism of mitochondrial ORF79 accumulation by Rf1 protein in BT‐type cytoplasmic male sterile rice

Kazama, T., Nakamura, T., Watanabe, M., et al. (2008) · The Plant Journal · doi:10.1111/j.1365-313x.2008.03529.x · Cited by 178 · see citing works

Sel1-like repeat proteins in signal transduction

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The Nac2 gene of Chlamydomonas encodes a chloroplast TPR‐like protein involved in psbD mRNA stability

Boudreau, E., Nickelsen, J., Lemaire, S. D., Ossenbühl, F., & Rochaix, J. (2000) · The EMBO Journal · doi:10.1093/emboj/19.13.3366 · Cited by 163 · see citing works

Action of RNase II and Polynucleotide Phosphorylase against RNAs Containing Stem-Loops of Defined Structure

Spickler, C., & Mackie, G. A. (2000) · Journal of Bacteriology · doi:10.1128/jb.182.9.2422-2427.2000 · Cited by 143 · see citing works

Identification of a Pentatricopeptide Repeat Protein Implicated in Splicing of Intron 1 of Mitochondrial nad7 Transcripts

Kopřivová, A., Francs‐Small, C. C. D., Calder, G. M., Mugford, S. T., Tanz, S. K., Lee, B., Zechmann, B., Small, I., & Kopřiva, S. (2010) · Journal of Biological Chemistry · doi:10.1074/jbc.m110.147603 · Cited by 142 · see citing works

MRL1, a Conserved Pentatricopeptide Repeat Protein, Is Required for Stabilization of rbcL mRNA in Chlamydomonas and Arabidopsis

Johnson, X., Wostrikoff, K., Finazzi, G., et al. (2010) · The Plant Cell · doi:10.1105/tpc.109.066266 · Cited by 142 · see citing works

The protein factors MBNL1 and U2AF65 bind alternative RNA structures to regulate splicing

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PPR motifs of the nucleus‐encoded factor, PGR3, function in the selective and distinct steps of chloroplast gene expression in Arabidopsis

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Characterization of Mbb1, a nucleus-encoded tetratricopeptide-like repeat protein required for expression of the chloroplast psbB / psbT / psbH gene cluster in Chlamydomonas reinhardtii

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The Nucleus-Encoded HCF107 Gene of Arabidopsis Provides a Link between Intercistronic RNA Processing and the Accumulation of Translation-Competent psbH Transcripts in Chloroplasts

Felder, S., Meierhoff, K., Sane, A. P., et al. (2001) · The Plant Cell · doi:10.1105/tpc.010090 · Cited by 121 · see citing works

RNR1, a 3'-5' exoribonuclease belonging to the RNR superfamily, catalyzes 3' maturation of chloroplast ribosomal RNAs in Arabidopsis thaliana

Bollenbach, T. J. (2005) · Nucleic Acids Research · doi:10.1093/nar/gki576 · Cited by 118 · see citing works

RNA channelling by the archaeal exosome

Lorentzen, E., Dziembowski, A., Lindner, D., Séraphin, B., & Conti, E. (2007) · EMBO Reports · doi:10.1038/sj.embor.7400945 · Cited by 115 · see citing works

Sequence-specific binding of a chloroplast pentatricopeptide repeat protein to its native group II intron ligand

Williams-Carrier, R. E., Kroeger, T. S., & Barkan, A. (2008) · RNA · doi:10.1261/rna.1077708 · Cited by 112 · see citing works

Two Exoribonucleases Act Sequentially to Process Mature 3′-Ends of atp9 mRNAs in Arabidopsis Mitochondria

Perrin, R., Meyer, E. H., Zaepfel, M., et al. (2004) · Journal of Biological Chemistry · doi:10.1074/jbc.m401182200 · Cited by 100 · see citing works

A nuclear-encoded function essential for translation of the chloroplast psaB mRNA in chlamydomonas.

Stampacchia, O., Girard‐Bascou, J., Zanasco, J.-L., et al. (1997) · The Plant Cell · doi:10.1105/tpc.9.5.773 · Cited by 95 · see citing works

Pentatricopeptide repeat domain protein 1 lowers the levels of mitochondrial leucine tRNAs in cells

Rackham, O., Davies, S. M. K., Shearwood, A.-M. J., Hamilton, K. L., Whelan, J., & Filipovska, A. (2009) · Nucleic Acids Research · doi:10.1093/nar/gkp627 · Cited by 86 · see citing works

How the ribosome moves along the mRNA during protein synthesis.

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A Pentatricopeptide Repeat Protein Is Required for RNA Processing of clpP Pre-mRNA in Moss Chloroplasts

Hattori, M., Miyake, H., & Sugita, M. (2007) · Journal of Biological Chemistry · doi:10.1074/jbc.m608034200 · Cited by 83 · see citing works

RNA PROCESSING FACTOR2 Is Required for 5′ End Processing of nad9 and cox3 mRNAs in Mitochondria of Arabidopsis thaliana

Jonietz, C., Forner, J., Hölzle, A., Thuss, S., & Binder, S. (2010) · The Plant Cell · doi:10.1105/tpc.109.066944 · Cited by 81 · see citing works

Molecular Identification and Function of cis- and trans-Acting Determinants for petA Transcript Stability in Chlamydomonas reinhardtii Chloroplasts

Loiselay, C., Gumpel, N. J., Girard‐Bascou, J., et al. (2008) · Molecular and Cellular Biology · doi:10.1128/mcb.02056-07 · Cited by 81 · see citing works

RNA polyadenylation and degradation in different Archaea; roles of the exosome and RNase R

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Functional Shine-Dalgarno-Like Sequences for Translational Initiation of Chloroplast mRNAs

Hirose, T., & Sugiura, M. (2004) · Plant and Cell Physiology · doi:10.1093/pcp/pch002 · Cited by 72 · see citing works

The nuclear gene HCF107 encodes a membrane‐associated R‐TPR (RNA tetratricopeptide repeat)‐containing protein involved in expression of the plastidial psbH gene in Arabidopsis

Sane, A. P., Stein, B., & Westhoff, P. (2005) · The Plant Journal · doi:10.1111/j.1365-313x.2005.02409.x · Cited by 71 · see citing works

Synthesis of the D2 Protein of Photosystem II in Chlamydomonas Is Controlled by a High Molecular Mass Complex Containing the RNA Stabilization Factor Nac2 and the Translational Activator RBP40

Schwarz, C. K. W., Ingolf, E., Kortmann, J., et al. (2007) · The Plant Cell · doi:10.1105/tpc.107.051722 · Cited by 69 · see citing works

Translation of tobacco chloroplast rps14 mRNA depends on a Shine‐Dalgarno‐like sequence in the 5′‐untranslated region but not on internal RNA editing in the coding region

Hirose, T., Kusumegi, T., & Sugiura, M. (1998) · FEBS Letters · doi:10.1016/s0014-5793(98)00673-5 · Cited by 64 · see citing works

Ribosomal RNA processing and an RNase R family member in chloroplasts of Arabidopsis

Kishine, M., Takabayashi, A., Munekage, Y. N., et al. (2004) · Plant Molecular Biology · doi:10.1007/s11103-004-1507-1 · Cited by 50 · see citing works

A moss pentatricopeptide repeat protein binds to the 3′ end of plastid clpP pre‐mRNA and assists with mRNA maturation

Hattori, M., & Sugita, M. (2009) · FEBS Journal · doi:10.1111/j.1742-4658.2009.07267.x · Cited by 34 · see citing works

A spontaneous tRNA suppressor of a mutation in the Chlamydomonas reinhardtii nuclear MCD1 gene required for stability of the chloroplast petD mRNA

Murakami, S. (2005) · Nucleic Acids Research · doi:10.1093/nar/gki651 · Cited by 34 · see citing works

A Nuclear-Encoded Function Essential for Translation of the Chloroplast psaB mRNA in Chlamydomonas

Stampacchia, O., Girard‐Bascou, J., Zanasco, J.-L., et al. (1997) · The Plant Cell · doi:10.2307/3870431 · Cited by 14 · see citing works

The mitochondrial pentatricopeptide repeat protein <scp>PPR</scp>19 is involved in the stabilization of <i>NADH dehydrogenase 1</i> transcripts and is crucial for mitochondrial function and <i>Arabidopsis thaliana</i> development

Lee, K., Han, J. H., Park, Y., Colas des Francs‐Small, C., Small, I., & Kang, H. (2017) · New Phytologist · doi:10.1111/nph.14528 · Cited by 72 · see citing works

Revisiting the yeast PPR proteins–application of an iterative hidden Markov model algorithm reveals new members of the rapidly evolving family

Lipinski, K. A., Puchta, O., Surendranath, V., Kudla, M., & Golik, P. (2011) · Molecular Biology and Evolution · doi:10.1093/molbev/msr120 · Cited by 62 · see citing works

Yeast PPR proteins, watchdogs of mitochondrial gene expression

Herbert, C. J., Golik, P., & Bonnefoy, N. (2013) · RNA Biology · doi:10.4161/rna.25392 · Cited by 54 · see citing works

<i>Candida albicans</i> PPR proteins are required for the expression of respiratory Complex I subunits

Wenda, J. M., Drzewicka, K., Mulica, P., Tetaud, E., di Rago, J. P., Golik, P., & Łabędzka-Dmoch, K. (2024) · GENETICS · doi:10.1093/genetics/iyae124 · Cited by 2 · see citing works

Alteration of Mitochondrial Transcript Expression in Arabidopsis thaliana Using a Custom-Made Library of Pentatricopeptide Repeat Proteins

Sanglard, L. V. P., Small, I., & Francs‐Small, C. C. D. (2023) · International Journal of Molecular Sciences · doi:10.3390/ijms241713233 · Cited by 1 · see citing works

The pentatricopeptide repeat MTSF1 protein stabilizes the nad4 mRNA in Arabidopsis mitochondria

Haïli, N., Arnal, N., Quadrado, M., Amiar, S., Tcherkez, G. G. B., Dahan, J., Briozzo, P., Francs‐Small, C. C. D., Vrielynck, N., & Mireau, H. (2013) · Nucleic Acids Research · doi:10.1093/nar/gkt337 · Cited by 108 · see citing works

A moss pentatricopeptide repeat protein binds to the 3′ end of plastid clpP pre‐mRNA and assists with mRNA maturation

Hattori, M., & Sugita, M. (2009) · FEBS Journal · doi:10.1111/j.1742-4658.2009.07267.x · Cited by 34 · see citing works

The pentatricopeptide repeat protein MTSF2 stabilizes a nad1 precursor transcript and defines the 3΄ end of its 5΄-half intron

Wang, C., Aubé, F., Planchard, N., Quadrado, M., Dargel-Graffin, C., Nogué, F., & Mireau, H. (2017) · Nucleic Acids Research · doi:10.1093/nar/gkx162 · Cited by 59 · see citing works

GENOMES UNCOUPLED1: an RNA-binding protein required for early PSII biogenesisPreprint

Cui, C., Sun, S., Zhang, S., et al. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.09.21.558905 · Cited by 4 · see citing works