Student or educator? Sign up with your school email and get 6 months of Pro free.
Cited by 198

The DOI matches its Crossref record; 26 of the 26 references it cites were found in a registry or an index.

The chromatin insulator CTCF and the emergence of metazoan diversity

Open access
Heger, Peter, Marin, Birger, Bartkuhn, Marek, Schierenberg, Einhard, Wiehe, Thomas·2012·Proceedings of the National Academy of Sciences

Abstract

The great majority of metazoans belong to bilaterian phyla. They diversified during a short interval in Earth’s history known as the Cambrian explosion, ∼540 million years ago. However, the genetic basis of these events is poorly understood. Here we argue that the vertebrate genome organizer CTCF (CCCTC-binding factor) played an important role for the evolution of bilaterian animals. We provide evidence that the CTCF protein and a genome-wide abundance of CTCF-specific binding motifs are unique to bilaterian phyla, but absent in other eukaryotes. We demonstrate that CTCF-binding sites within vertebrate and Drosophila Hox gene clusters have been maintained for several hundred million years, suggesting an ancient origin of the previously known interaction between Hox gene regulation and CTCF. In addition, a close correlation between the presence of CTCF and Hox gene clusters throughout the animal kingdom suggests conservation of the Hox-CTCF link across the Bilateria. On the basis of these findings, we propose the existence of a Hox-CTCF kernel as principal organizer of bilaterian body plans. Such a kernel could explain ( i ) the formation of Hox clusters in Bilateria, ( ii ) the diversity of bilaterian body plans, and ( iii ) the uniqueness and time of onset of the Cambrian explosion.

Overview

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1073/pnas.1111941109

Cites

26 of 26 references verified0 citation errors · 0 not checkable

Statistics

Verification

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Citations

Cites

Show all 26 references

Research works printed but not linked: 60

  1. 10.1098/rstb.2009.0038 · DOI
  2. 10.1038/sj.embor.7400334 · DOI · Paper page
  3. 10.1371/journal.pgen.1000169 · DOI
  4. 10.1016/S0070-2153(07)80009-3 · DOI · Paper page
  5. 10.1016/j.cell.2009.06.001 · DOI · Paper page
  6. 10.1007/s00018-009-8647-z · DOI
  7. 10.1073/pnas.0701811104 · DOI · Paper page
  8. 10.1016/j.cell.2006.12.048 · DOI · Paper page
  9. 10.1038/ng.857 · DOI · Paper page
  10. VV Lobanenkov, et al., A novel sequence-specific DNA binding protein which interacts with three regularly spaced direct repeats of the CCCTC-motif in the 5′-flanking sequence of the chicken c-myc gene. Oncogene 5, 1743–1753 (1990).
  11. 10.1016/S0925-4773(02)00005-9 · DOI
  12. 10.1016/j.gene.2006.01.036 · DOI
  13. 10.1186/1471-2199-6-16 · DOI
  14. 10.1186/1471-2199-10-84 · DOI
  15. 10.1038/nature07191 · DOI · Paper page
  16. 10.1038/nature08830 · DOI · Paper page
  17. 10.1016/j.ydbio.2008.12.039 · DOI
  18. 10.1371/journal.pgen.0030112 · DOI · Paper page
  19. 10.1074/jbc.M706213200 · DOI
  20. 10.1016/j.cell.2011.11.058 · DOI · Paper page
  21. 10.1038/sj.emboj.7601851 · DOI · Paper page
  22. 10.1038/emboj.2008.214 · DOI · Paper page
  23. 10.1371/journal.pone.0034915 · DOI
  24. 10.1038/msb.2010.79 · DOI
  25. 10.1074/jbc.M403121200 · DOI
  26. 10.1128/MCB.00327-10 · DOI
  27. 10.1073/pnas.1019391108 · DOI · Paper page
  28. 10.1093/nar/gkr1260 · DOI
  29. 10.1073/pnas.1018279108 · DOI
  30. 10.1093/nar/gkn818 · doi:10.1093/nar/gkn818
  31. 10.1371/journal.pgen.1001260 · DOI
  32. 10.1126/science.1198374 · DOI · Paper page
  33. 10.1093/nar/gkq1248 · doi:10.1093/nar/gkq1248
  34. 10.1093/molbev/msg236 · DOI · Paper page
  35. 10.1101/gad.5.11.2048 · DOI · Paper page
  36. 10.1242/dev.121.4.1077 · DOI
  37. 10.1242/dev.121.4.957 · DOI · Paper page
  38. 10.1101/gad.10.18.2326 · DOI
  39. 10.1242/dev.122.6.1895 · DOI
  40. 10.1093/emboj/16.14.4393 · DOI
  41. 10.1242/dev.00672 · DOI
  42. 10.1002/jez.b.21009 · DOI
  43. 10.1016/j.devcel.2010.11.009 · DOI
  44. MA Ferraiuolo et al. The three-dimensional architecture of Hox cluster silencing. Nucleic Acids Res 38:7472–7484. (2010). · DOI
  45. 10.1242/dev.024539 · DOI
  46. 10.1242/dev.00151 · DOI
  47. 10.1038/nature08789 · DOI · Paper page
  48. 10.1126/science.1184655 · DOI · Paper page
  49. 10.1016/S0960-9822(98)70174-5 · doi:10.1016/s0960-9822(98)70174-5
  50. 10.1038/nature02709 · DOI · Paper page
  51. 10.1371/journal.pgen.1000814 · DOI · Paper page
  52. 10.1038/emboj.2009.34 · DOI
  53. 10.1073/pnas.0801913105 · DOI
  54. 10.1073/pnas.91.15.6751 · DOI
  55. 10.1093/bioinformatics/14.9.755 · DOI · Paper page
  56. 10.1186/gb-2009-10-3-r25 · DOI · Paper page
  57. 10.1186/gb-2008-9-9-r137 · DOI · Paper page
  58. TL Bailey, C Elkan, The value of prior knowledge in discovering motifs with MEME. Proc Int Conf Intell Syst Mol Biol 3, 21–29 (1995).
  59. GZ Hertz, GW Hartzell, GD Stormo, Identification of consensus patterns in unaligned DNA sequences known to be functionally related. Comput Appl Biosci 6, 81–92 (1990).
  60. 10.1073/pnas.0508169103 · DOI

Cited by

See all 198

Metadata

Authors
Heger, P., Marin, B., Bartkuhn, M., Schierenberg, E., & Wiehe, T.
Venue
Proceedings of the National Academy of Sciences
Published
2012-10-08
Volume
109
Issue
43
Pages
17507-17512
ISSN
  • 0027-8424 (ISSN-L)
  • 1091-6490
OpenAlex
W2067686625
Cited by
198
References
26
FWCI
2.21
Type
journal article
Language
en
Open access
green

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review

How to cite

Cite CoChat for the checks on this page, and the paper for its own findings.

This page
CoChat. (2026). Citation check: The chromatin insulator CTCF and the emergence of metazoan diversity. https://app.cochat.ai/papers/10.1073/pnas.1111941109
The paper
Heger, P., Marin, B., Bartkuhn, M., Schierenberg, E., & Wiehe, T. (2012). The chromatin insulator CTCF and the emergence of metazoan diversity. Proceedings of the National Academy of Sciences. https://doi.org/10.1073/pnas.1111941109

Data sources

Bibliographic data: Semantic Scholar, OpenAlex, Crossref.

Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).

Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.