Structural basis of coactivation of liver receptor homolog-1 by β-catenin
Open accessAbstract
We report the three-dimensional structure of a β-catenin armadillo repeat in complex with the liver receptor homolog-1 (LRH-1) ligand binding domain at 2.8 Å resolution as the first structure of β-catenin in complex with any nuclear receptor. The surface of β-catenin that binds LRH-1 partly overlaps defined contact sites for peptide segments of β-catenin partners, including T-cell factor-4. The surface of LRH-1 that engages β-catenin is comprised of helices 1, 9, and 10 and is distinct from known interaction surfaces of LRH-1, including corepressor and coactivator binding sites. Targeted mutagenesis of amino acids forming both sides of the LRH-1/β-catenin interface reveals that they are essential for stable interactions between these proteins in solution. The LRH-1 binding site in β-catenin is also required for association with androgen receptor, providing evidence that the observed LRH-1/β-catenin interaction may be prototypic.
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Predictive modeling suggests that β-catenin interacts with the AR hormone binding domain on a surface that overlaps with BF3.
“Predictive modeling suggests that β-catenin interacts with the AR hormone binding domain on a surface that overlaps with BF3.”
From The FKBP52 Cochaperone Acts in Synergy with β-Catenin to Potentiate Androgen Receptor Signaling (2015) · cites this paper as [25]
The Results report that β-catenin interacts with the AR ligand-binding domain, and the Discussion links AR binding to a region of β-catenin also used by LRH-1. Neither section reports predictive modeling that places the contact on an AR surface overlapping BF3; the Discussion says the AR binding interface remains uncertain. The indexed passages provide no page numbers. (LLM, conf=0.84)
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Cites
<i>Coot</i> : model-building tools for molecular graphics
Emsley, P., & Cowtan, K. (2004) · Acta Crystallographica Section D Biological Crystallography · doi:10.1107/s0907444904019158 · Cited by 30,571 · see citing works
<i>PHENIX</i> : a comprehensive Python-based system for macromolecular structure solution
Adams, P. D., Afonine, P. V., Bunkóczi, G., Chen, V. B., Davis, I. W., Echols, N., Headd, J. J., Hung, L.-W., Kapral, G. J., Grosse-Kunstleve, R. W., et al. (2010) · Acta Crystallographica Section D Biological Crystallography · doi:10.1107/s0907444909052925 · Cited by 23,716 · see citing works
<i>Phaser</i> crystallographic software
McCoy, A. J., Grosse-Kunstleve, R. W., Adams, P. D., Winn, M. D., Storoni, L. C., & Read, R. J. (2007) · Journal of Applied Crystallography · doi:10.1107/s0021889807021206 · Cited by 20,612 · see citing works
The CCP4 suite: programs for protein crystallography
Number Collaborative Computational Project (1994) · Acta Crystallographica Section D Biological Crystallography · doi:10.1107/s0907444994003112 · Cited by 17,299 · see citing works
Inference of macromolecular assemblies from crystalline state.
Krissinel, E., & Henrick, K. (2007) · Journal of Molecular Biology · doi:10.1016/j.jmb.2007.05.022 · Cited by 10,189 · see citing works
PHENIX: a comprehensive Python-based system for macromolecular structure solution
Adams, P. D., Afonine, P. V., Bunkòczi, G., Chen, V. B., Davis, I., Echols, N., Headd, J. J., Hung, L., Kapral, G. J., Grosse‐Kunstleve, R. W., et al. (2012) · International Tables for Crystallography · doi:10.1107/97809553602060000865 · Cited by 7,334 · see citing works
A regulatory cascade of the nuclear receptors FXR, SHP-1, and LRH-1 represses bile acid biosynthesis
Goodwin, B., Jones, S. A., Price, R. R., Watson, M. A., McKee, D. D., Moore, L. B., Galardi, C., Wilson, J. G., Lewis, M. C., Roth, M. E., et al. (2000) · Molecular Cell · doi:10.1016/s1097-2765(00)00051-4 · Cited by 1,940 · see citing works
Towards an integrated view of Wnt signaling in development
van Amerongen, R., & Nusse, R. (2009) · Development · doi:10.1242/dev.033910 · Cited by 1,168 · see citing works
Proximal events in Wnt signal transduction
Angers, S., & Moon, R. T. (2009) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm2717 · Cited by 1,106 · see citing works
A structural role for hormone in the thyroid hormone receptor
Wagner, R. L., Apriletti, J. W., McGrath, M. E., West, B. L., Baxter, J. D., & Fletterick, R. J. (1995) · Nature · doi:10.1038/378690a0 · Cited by 928 · see citing works
Self-citationStructure of the intact PPAR-γ–RXR-α nuclear receptor complex on DNA
Chandra, V., Huang, P., Hamuro, Y., Raghuram, S., Wang, Y., Burris, T. P., & Rastinejad, F. (2008) · Nature · doi:10.1038/nature07413 · Cited by 808 · see citing works
Three-Dimensional Structure of the Armadillo Repeat Region of β-Catenin
Huber, A. H., Nelson, W. J., & Weis, W. I. (1997) · Cell · doi:10.1016/s0092-8674(00)80352-9 · Cited by 706 · see citing works
Lala, D. S. (1992) · Molecular Endocrinology · doi:10.1210/me.6.8.1249 · Cited by 678 · see citing works
Petersen, G. M., Amundadottir, L. T., Fuchs, C. S., Kraft, P., Stolzenberg‐Solomon, R. Z., Jacobs, K. B., Arslan, A. A., Bueno-de-Mesquita, H. B., Gallinger, S., Gross, M. D., et al. (2010) · Nature Genetics · doi:10.1038/ng.522 · Cited by 596 · see citing works
A common trans-acting factor, Ad4-binding protein, to the promoters of steroidogenic P-450s.
Morohashi, K.-I., Honda, S., Inomata, Y., Handa, H., & Omura, T. (1992) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(19)37129-7 · Cited by 537 · see citing works
Structural Overview of the Nuclear Receptor Superfamily: Insights into Physiology and Therapeutics
Huang, P., Chandra, V., & Rastinejad, F. (2010) · Annual Review of Physiology · doi:10.1146/annurev-physiol-021909-135917 · Cited by 530 · see citing works
Heng, J.-C. D., Feng, B., Han, J., Jiang, J., Kraus, P., Ng, J.-H., Orlov, Y. L., Huss, M., Yang, L., Lufkin, T., et al. (2010) · Cell stem cell · doi:10.1016/j.stem.2009.12.009 · Cited by 486 · see citing works
Structure and Biochemistry of Cadherins and CateninsPreprint
Shapiro, L. S., & Weis, W. I. (2009) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a003053 · Cited by 460 · see citing works
LRH-1: an orphan nuclear receptor involved in development, metabolism and steroidogenesis.
Fayard, E., Auwerx, J., & Schoonjans, K. (2004) · Trends in Cell Biology · doi:10.1016/j.tcb.2004.03.008 · Cited by 445 · see citing works
Crystal Structure of a Heterodimeric Complex of RAR and RXR Ligand-Binding Domains
Bourguet, W., Vivat, V., Wurtz, J., Chambon, P., Gronemeyer, H., & Moras, D. (2000) · Molecular Cell · doi:10.1016/s1097-2765(00)80424-4 · Cited by 405 · see citing works
Krylova, I. N., Sablin, E. P., Moore, J. M. R., Xu, R. X., Waitt, G. M., MacKay, J. A., JUZUMIENE, D. I., Bynum, J. M., Madauss, K. P., Montana, V. G., et al. (2005) · Cell · doi:10.1016/j.cell.2005.01.024 · Cited by 405 · see citing works
Self-citationInteraction of Nuclear Receptors with the Wnt/β-Catenin/Tcf Signaling Axis: Wnt You Like to Know?
Mulholland, D. J., Dedhar, S., Coetzee, G. A., & Nelson, C. C. (2005) · Endocrine Reviews · doi:10.1210/er.2003-0034 · Cited by 377 · see citing works
Linking β-Catenin to Androgen-signaling Pathway
Yang, F., Li, X., Sharma, M., Sasaki, C. Y., Longo, D. L., Lim, B., & Sun, Z. (2002) · Journal of Biological Chemistry · doi:10.1074/jbc.m111962200 · Cited by 342 · see citing works
Nuclear Receptor Coregulators and Human Disease
Lonard, D. M., Lanz, R. B., & O’Malley, B. W. (2007) · Endocrine Reviews · doi:10.1210/er.2007-0012 · Cited by 303 · see citing works
Gu, P., Goodwin, B. J., Chung, A. C.-K., Xu, X., Wheeler, D. A., Price, R. R., Galardi, C. M., Peng, L., Latour, A. M., Koller, B. H., et al. (2005) · Molecular and Cellular Biology · doi:10.1128/mcb.25.9.3492-3505.2005 · Cited by 284 · see citing works
Nitta, M., Ku, S., Brown, C., Okamoto, A. Y., & Shan, B. (1999) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.96.12.6660 · Cited by 279 · see citing works
Synergy between LRH-1 and β-Catenin Induces G1 Cyclin-Mediated Cell Proliferation
Botrugno, O. A., Fayard, E., Annicotte, J., Haby, C., Brennan, T., Wendling, O., Tanaka, T., Kodama, T., Thomas, W., Auwerx, J. H., et al. (2004) · Molecular Cell · doi:10.1016/j.molcel.2004.07.009 · Cited by 270 · see citing works
Mechanistic insights from structural studies of β-catenin and its binding partners
Xu, W., & Kimelman, D. (2007) · Journal of Cell Science · doi:10.1242/jcs.013771 · Cited by 246 · see citing works
A nuclear-receptor-dependent phosphatidylcholine pathway with antidiabetic effects
Lee, J. M., Lee, Y., Mamrosh, J. L., Busby, S. A., Griffin, P. R., Pathak, M. C., Ortlund, E. A., & Moore, D. D. (2011) · Nature · doi:10.1038/nature10111 · Cited by 241 · see citing works
Xing, Y., Clements, W. K., Kimelman, D., & Xu, W. (2003) · Genes & Development · doi:10.1101/gad.1142603 · Cited by 237 · cited 1× · see citing works
“X-ray structures of the ARM have been determined with interacting fragments of TCF-4 (41, 42), inhibitor of beta-catenin and TCF-4 (ICAT) (43), Axin (44), B-cell chronic lymphocytic leukemia/lymphoma 9 (BCL9) (45), and others (37, 38).”
MethodCrystal Structure of a β-Catenin/BCL9/Tcf4 Complex
Sampietro, J., Dahlberg, C. L., Cho, U., Hinds, T. R., Kimelman, D., & Xu, W. (2006) · Molecular Cell · doi:10.1016/j.molcel.2006.09.001 · Cited by 222 · see citing works
Acetylation of β-Catenin by p300 Regulates β-Catenin-Tcf4 Interaction
Lévy, L., Yu, W., Labalette, C., Wu, Y., Renard, C.-A., Buendia, M. A., & Neuveut, C. (2004) · Molecular and Cellular Biology · doi:10.1128/mcb.24.8.3404-3414.2004 · Cited by 220 · see citing works
Tcf4 can specifically recognize beta-catenin using alternative conformations.
Graham, T. A., Ferkey, D. M., Mao, F., Kimelman, D., & Xu, W. (2001) · Nature Structural Biology · doi:10.1038/nsb718 · Cited by 216 · see citing works
Crystal Structure of a Full-Length β-Catenin
Xing, Y., Takemaru, K., Liu, J., Berndt, J. D., Zheng, J., Moon, R. T., & Xu, W. (2008) · Structure · doi:10.1016/j.str.2007.12.021 · Cited by 214 · see citing works
Modulation of human nuclear receptor LRH-1 activity by phospholipids and SHP
Ortlund, E. A., Lee, Y., Solomon, I. H., Hager, J., Safi, R., Choi, Y., Guan, Z., Tripathy, A., Raetz, C. R. H., McDonnell, D. P., et al. (2005) · Nature Structural & Molecular Biology · doi:10.1038/nsmb910 · Cited by 203 · see citing works
Structure of a human Tcf4-beta-catenin complex.
Poy, F., Lepourcelet, M., Shivdasani, R. A., & Eck, M. J. (2001) · Nature Structural Biology · doi:10.1038/nsb720 · Cited by 200 · see citing works
Jordan, B. K., Shen, J. H.-C., Olaso, R., Ingraham, H. A., & Vilain, E. J. N. (2003) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1834480100 · Cited by 192 · see citing works
RORα Attenuates Wnt/β-Catenin Signaling by PKCα-Dependent Phosphorylation in Colon Cancer
Lee, J. M., Kim, I. S., Kim, H.-K., Lee, J. S., Kim, K., Yim, H. Y., Jeong, J., Kim, J. H., Kim, J.-Y., Lee, H., et al. (2010) · Molecular Cell · doi:10.1016/j.molcel.2009.12.022 · Cited by 180 · see citing works
Daniels, D. L., & Weis, W. I. (2002) · Molecular Cell · doi:10.1016/s1097-2765(02)00631-7 · Cited by 167 · see citing works
Structural Basis for Ligand-Independent Activation of the Orphan Nuclear Receptor LRH-1
Sablin, E. P., Krylova, I. N., Fletterick, R. J., & Ingraham, H. A. (2003) · Molecular Cell · doi:10.1016/s1097-2765(03)00236-3 · Cited by 164 · see citing works
Self-citationParé, J., Malenfant, D., Courtemanche, C., et al. (2004) · Journal of Biological Chemistry · doi:10.1074/jbc.m401523200 · Cited by 157 · see citing works
Suzuki, T., Kasahara, M., Yoshioka, H., Morohashi, K.-I., & Umesono, K. (2002) · Molecular and Cellular Biology · doi:10.1128/mcb.23.1.238-249.2003 · Cited by 153 · see citing works
Schoonjans, K., Dubuquoy, L., Mebis, J., Fayard, E., Wendling, O., Haby, C., Geboes, K. J., & Auwerx, J. H. (2005) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0409756102 · Cited by 147 · see citing works
Centenera, M. M., Harris, J. M., Tilley, W. D., & Butler, L. M. (2008) · Molecular Endocrinology · doi:10.1210/me.2008-0017 · Cited by 146 · see citing works
Mizusaki, H., Kawabe, K., Mukai, T., Ariyoshi, E., Kasahara, M., Yoshioka, H., Swain, A., & Morohashi, K.-I. (2003) · Molecular Endocrinology · doi:10.1210/me.2002-0362 · Cited by 140 · see citing works
Benod, C. C., Vinogradova, M. V., Jouravel, N., Kim, G., Fletterick, R. J., & Sablin, E. P. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1112047108 · Cited by 128 · see citing works
Self-citationMueller, M., Cima, I., Noti, M., Fuhrer, A. C., Jakob, S., Dubuquoy, L., Schoonjans, K., & Brunner, T. (2006) · The Journal of Experimental Medicine · doi:10.1084/jem.20060357 · Cited by 121 · see citing works
Li, M., Xie, Y., Kong, Y., Wu, X., Zhu, L., & Wang, Y. (1998) · Journal of Biological Chemistry · doi:10.1074/jbc.273.44.29022 · Cited by 112 · see citing works
A method for the analysis of domain movements in large biomolecular complexes
Poornam, G., Matsumoto, A., Ishida, H., & Hayward, S. (2008) · Proteins Structure Function and Bioinformatics · doi:10.1002/prot.22339 · Cited by 109 · see citing works
Boerboom, D., Pilon, N., Behdjani, R., Silversides, D. W., & Sirois, J. (2000) · Endocrinology · doi:10.1210/endo.141.12.7808 · Cited by 108 · see citing works
Mulholland, D. J., Read, J. T., Rennie, P. S., Cox, M., & Nelson, C. C. (2003) · Oncogene · doi:10.1038/sj.onc.1206802 · Cited by 106 · see citing works
The structure of corepressor Dax-1 bound to its target nuclear receptor LRH-1
Sablin, E. P., Woods, A., Krylova, I. N., Hwang, P. K., Ingraham, H. A., & Fletterick, R. J. (2008) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0808936105 · Cited by 106 · see citing works
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Annicotte, J., Carine Chavey, A., Servant, N., Teyssier, J., Bardin, A., Licznar, A., Badia, É., Pujol, P., Vignon, F., Maudelondé, T., et al. (2005) · Oncogene · doi:10.1038/sj.onc.1208950 · Cited by 105 · see citing works
Gummow, B. M., Winnay, J. N., & Hammer, G. D. (2003) · Journal of Biological Chemistry · doi:10.1074/jbc.m212677200 · Cited by 96 · see citing works
Li, Y., Choi, M., Suino, K., Kovach, A., Daugherty, J., Kliewer, S. A., & Xu, H. E. (2005) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0501204102 · Cited by 95 · see citing works
Annicotte, J., Fayard, E., Swift, G. H., Selander, L., Edlund, H., Tanaka, T., Kodama, T., Schoonjans, K., & Auwerx, J. (2003) · Molecular and Cellular Biology · doi:10.1128/mcb.23.19.6713-6724.2003 · Cited by 92 · see citing works
Phosphorylation of the Hinge Domain of the Nuclear Hormone Receptor LRH-1 Stimulates Transactivation
Lee, Y., Choi, Y., Chua, S. S., Park, Y. J., & Moore, D. D. (2006) · Journal of Biological Chemistry · doi:10.1074/jbc.m509115200 · Cited by 89 · see citing works
Yazawa, T., Inanoka, Y., Mizutani, T., Kuribayashi, M., Umezawa, A., & Miyamoto, K. (2009) · Endocrinology · doi:10.1210/en.2008-1310 · Cited by 75 · see citing works
Synergistic Effects of Coactivators GRIP1 and β-Catenin on Gene Activation
Li, H., Kim, J. H., Koh, S. S., & Stallcup, M. R. (2004) · Journal of Biological Chemistry · doi:10.1074/jbc.m311374200 · Cited by 70 · see citing works
Maximal Activity of the Luteinizing Hormoneβ-Subunit Gene Requires β-Catenin
Salisbury, T. B., Binder, A. K., Grammer, J. C., & Nilson, J. H. (2007) · Molecular Endocrinology · doi:10.1210/me.2006-0383 · Cited by 67 · see citing works
Hossain, A., & Saunders, G. F. (2003) · Journal of Biological Chemistry · doi:10.1074/jbc.m300804200 · Cited by 64 · see citing works
Solomon, I. H., Hager, J., Safi, R., McDonnell, D. P., Redinbo, M. R., & Ortlund, E. A. (2005) · Journal of Molecular Biology · doi:10.1016/j.jmb.2005.10.009 · Cited by 61 · see citing works
Interaction of β-Catenin and TIF2/GRIP1 in Transcriptional Activation by the Androgen Receptor
Song, L., & Gelmann, E. P. (2005) · Journal of Biological Chemistry · doi:10.1074/jbc.m503850200 · Cited by 51 · see citing works
Xu, P., Liu, Y.-Q., Shan, S., Kong, Y., Zhou, Q., Li, M., Ding, J., Xie, Y., & Wang, Y. (2004) · Molecular Endocrinology · doi:10.1210/me.2003-0334 · Cited by 45 · see citing works
Asahina, M., Valenta, T., Macůrková, M., Kořínek, V., & Jindra, M. (2006) · Developmental Cell · doi:10.1016/j.devcel.2006.06.003 · Cited by 42 · see citing works
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Self-citation
- Authors
- Yumoto, F., Nguyen, P., Sablin, E. P., Baxter, J. D., Webb, P., & Fletterick, R. J.
- Affiliations
- University of California, San Francisco (US)
- Houston Methodist (US)
- Venue
- Proceedings of the National Academy of Sciences
- Publisher
- National Academy of Sciences
- Published
- 2011-12-20
- Volume
- 109
- Issue
- 1
- Pages
- 143-148
- ISSN
- 0027-8424 (ISSN-L)
- 1091-6490
- PMC
- PMC3252924
- OpenAlex
- W2054093429
- Cited by
- 63
- References
- 65
- Citations by year
- 2026: 3 · 2025: 1 · 2024: 4 · 2023: 4 · 2022: 6 · 2021: 5 · 2020: 5 · 2019: 3 · 2018: 1 · 2017: 4 · 2016: 2 · 2015: 8 · 2014: 4 · 2013: 9 · 2012: 4
- FWCI
- 2.33
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Proceedings of the National Academy of Sciences (publishedVersion)
- Europe PMC (PubMed Central) (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Funders
- National Institute of Diabetes and Digestive and Kidney Diseases (DK 41482, DK51281, R01DK078075, R21DK084504, R01DK051281)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Wnt/β-catenin signaling in development and cancer
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Receptor Mechanisms and Signaling
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Structure and Dynamics
- Keywords
- β-catenin, LRH-1, armadillo repeats, protein-protein interaction, ligand-binding domain, T-cell factor 4, androgen receptor, transcriptional coactivator, protein complex structure
- MeSH terms
- DNA Mutational Analysis, Humans, Luciferases, Models, Molecular, Protein Binding, Receptors, Androgen, Structure-Activity Relationship, Point Mutation, Protein Structure, Tertiary, Receptors, Cytoplasmic and Nuclear, beta Catenin, Enzyme Assays
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