The DOI matches its Crossref record; 30 of the 30 references it cites were found in a registry or an index.
MicroRNA regulation of plant innate immune receptors
Open accessAbstract
Plant genomes contain large numbers of cell surface leucine-rich repeat (LRR) and intracellular nucleotide binding (NB)-LRR immune receptors encoded by resistance ( R ) genes that recognize specific pathogen effectors and trigger resistance responses. The unregulated expression of NB-LRR genes can trigger autoimmunity in the absence of pathogen infection and inhibit plant growth. Despite the potential serious consequence on agricultural production, the mechanisms regulating R -gene expression are not well understood. We identified microRNA (miRNA) progenitor genes precursor transcripts, and two miRNAs [nta-miR6019 (22-nt) and nta-miR6020 (21-nt)] that guide cleavage of transcripts of the Toll and Interleukin-1 receptor-NB-LRR immune receptor N from tobacco that confers resistance to tobacco mosaic virus (TMV). We further showed that cleavage by nta-miR6019 triggers RNA-dependent RNA polymerase 6- and ribonuclease Dicer-like 4-dependent biogenesis of 21-nt secondary siRNAs “in phase” with the 22-nt miR6019 cleavage site. Furthermore, we found that processing of the 22-nt nta-miR6019 depended on an asymmetric bulge caused by mismatch in the nta-miR6019 precursor. Interestingly, coexpression of N with nta-miR6019 and nta-miR6020 resulted in attenuation of N -mediated resistance to TMV, indicating that these miRNAs have functional roles in NB-LRR regulation. Using a bioinformatics approach, we identified six additional 22-nt miRNA and two 21-nt miRNA families from three Solanaceae species—tobacco, tomato, and potato. We show that members of these miRNA families cleave transcripts of predicted functional R genes and trigger production of phased secondary 21-nt siRNAs. Our results demonstrate a conserved role for miRNAs and secondary siRNAs in NB-LRR/LRR immune receptor gene regulation and pathogen resistance in Solanaceae .
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Mfold web server for nucleic acid folding and hybridization prediction
Zuker, M. (2003) · Nucleic Acids Research · doi:10.1093/nar/gkg595 · Cited by 13,404
Jones, J. D. G., & Dangl, J. L. (2006) · Nature · doi:10.1038/nature05286 · Cited by 13,177
Host-Microbe Interactions: Shaping the Evolution of the Plant Immune Response
Chisholm, S. T., Coaker, G., Day, B., & Staskawicz, B. J. (2006) · Cell · doi:10.1016/j.cell.2006.02.008 · Cited by 2,957
microRNA-Directed Phasing during Trans-Acting siRNA Biogenesis in Plants
Allen, E., Xie, Z., Gustafson, A. M., & Carrington, J. C. (2005) · Cell · doi:10.1016/j.cell.2005.04.004 · Cited by 2,268
Whitham, S., Dinesh-Kumar, S. P., Choi, D., Hehl, R., Corr, C., & Baker, B. (1994) · Cell · doi:10.1016/0092-8674(94)90283-6 · Cited by 1,346
Self-citationClusters of Resistance Genes in Plants Evolve by Divergent Selection and a Birth-and-Death Process
Michelmore, R. W., & Meyers, B. C. (1998) · Genome Research · doi:10.1101/gr.8.11.1113 · Cited by 1,002
Isolation of the Tomato Cf-9 Gene for Resistance to Cladosporium fulvum by Transposon Tagging
Jones, D. A., Thomas, C. M., Hammond-Kosack, K. E., Balint-Kurti, P. J., & Jones, J. D. G. (1994) · Science · doi:10.1126/science.7973631 · Cited by 925
Signaling in Plant-Microbe Interactions
Baker, B., Zambryski, P., Staskawicz, B., & Dinesh-Kumar, S. P. (1997) · Science · doi:10.1126/science.276.5313.726 · Cited by 831
Self-citationFitness costs of R-gene-mediated resistance in Arabidopsis thaliana
Tian, D., Traw, M. B., Chen, J. Q., Kreitman, M., & Bergelson, J. (2003) · Nature · doi:10.1038/nature01588 · Cited by 788
Signaling in Plant-Microbe Interactions
Pandey, A., & Chatterjee, S. (2013) · Cited by 767
Cited by
A Truncated Singleton NLR Causes Hybrid Necrosis in Arabidopsis thaliana
Barragan, A. C., Collenberg, M., Wang, J., Lee, R. R. Q., Cher, W. Y., Rabanal, F. A., Ashkenazy, H., Weigel, D., & Chae, E. (2021) · Molecular Biology and Evolution · doi:10.1093/molbev/msaa245 · Cited by 46
Metadata
- Authors
- Li, F., Pignatta, D., Bendix, C., Brunkard, J. O., Cohn, M. M., Tung, J., Sun, H., Kumar, P., & Baker, B.
- Venue
- Proceedings of the National Academy of Sciences
- Published
- 2012-01-18
- Volume
- 109
- Issue
- 5
- Pages
- 1790-1795
- ISSN
- 0027-8424 (ISSN-L)
- 1091-6490
- OpenAlex
- W2096194109
- Cited by
- 616
- References
- 30
- FWCI
- 54.93
- Type
- journal article
- Language
- en
- Open access
- bronze
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
How to cite
Cite CoChat for the checks on this page, and the paper for its own findings.
- This page
- CoChat. (2026). Citation check: MicroRNA regulation of plant innate immune receptors. https://app.cochat.ai/papers/10.1073/pnas.1118282109
- The paper
- Li, F., Pignatta, D., Bendix, C., Brunkard, J. O., Cohn, M. M., Tung, J., Sun, H., Kumar, P., & Baker, B. (2012). MicroRNA regulation of plant innate immune receptors. Proceedings of the National Academy of Sciences. https://doi.org/10.1073/pnas.1118282109
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.