The DOI matches its Crossref record; 41 of the 41 references it cites were found in a registry or an index.
X-linked H3K27me3 demethylase Utx is required for embryonic development in a sex-specific manner
Open accessAbstract
Embryogenesis requires the timely and coordinated activation of developmental regulators. It has been suggested that the recently discovered class of histone demethylases (UTX and JMJD3) that specifically target the repressive H3K27me3 modification play an important role in the activation of “bivalent” genes in response to specific developmental cues. To determine the requirements for UTX in pluripotency and development, we have generated Utx -null ES cells and mutant mice. The loss of UTX had a profound effect during embryogenesis. Utx -null embryos had reduced somite counts, neural tube closure defects and heart malformation that presented between E9.5 and E13.5. Unexpectedly, homozygous mutant female embryos were more severely affected than hemizygous mutant male embryos. In fact, we observed the survival of a subset of UTX-deficient males that were smaller in size and had reduced lifespan. Interestingly, these animals were fertile with normal spermatogenesis. Consistent with a midgestation lethality, UTX-null male and female ES cells gave rise to all three germ layers in teratoma assays, though sex-specific differences could be observed in the activation of developmental regulators in embryoid body assays. Lastly, ChIP-seq analysis revealed an increase in H3K27me3 in Utx -null male ES cells. In summary, our data demonstrate sex-specific requirements for this X-linked gene while suggesting a role for UTY during development.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
In the citing paper
“In mice, loss of Utx is associated with severe developmental defects in females, but not males, and a shortened male lifespan (Welstead et al., 2012).”
From The Aging Epigenome (2016) · cites this paper as Welstead et al., 2012
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
A bivalent chromatin structure marks key developmental genes in embryonic stem cells
Bernstein, B. E., Mikkelsen, T. S., Xie, X., Kamal, M., Huebert, D. J., Cuff, J., Fry, B., Meissner, A., Wernig, M., Plath, K., et al. (2006) · Cell · doi:10.1016/j.cell.2006.02.041 · Cited by 5,361
Self-citationRole of Histone H3 Lysine 27 Methylation in Polycomb-Group Silencing
Cao, R., Wang, L., Wang, H., Xia, L., Erdjument-Bromage, H., Tempst, P., Jones, R. S., & Zhang, Y. (2002) · Science · doi:10.1126/science.1076997 · Cited by 3,775
The Polycomb complex PRC2 and its mark in life
Margueron, R., & Reinberg, D. (2011) · Nature · doi:10.1038/nature09784 · Cited by 3,347
A Chromatin Landmark and Transcription Initiation at Most Promoters in Human Cells
Guenther, M. G., Levine, S. S., Boyer, L. A., Jaenisch, R., & Young, R. A. (2007) · Cell · doi:10.1016/j.cell.2007.05.042 · Cited by 2,002
Self-citationMorin, R. D., Johnson, N. A., Severson, T., Mungall, A. J. J., An, J., Goya, R., Paul, J. E., Boyle, M., Woolcock, B. W., Kuchenbauer, F. C., et al. (2010) · Nature Genetics · doi:10.1038/ng.518 · Cited by 1,719
Czermin, B., Melfi, R., McCabe, D., Seitz, V., Imhof, A., & Pirrotta, V. (2002) · Cell · doi:10.1016/s0092-8674(02)00975-3 · Cited by 1,536
Stem Cells, the Molecular Circuitry of Pluripotency and Nuclear Reprogramming
Jaenisch, R., & Young, R. A. (2008) · Cell · doi:10.1016/j.cell.2008.01.015 · Cited by 1,465
Self-citationUTX and JMJD3 are histone H3K27 demethylases involved in HOX gene regulation and development
Agger, K., Cloos, P. A., Christensen, J. F., Pasini, D., Rose, S., Rappsilber, J., Issaeva, I., Canaani, E., Salcini, A. E., & Helin, K. (2007) · Nature · doi:10.1038/nature06145 · Cited by 1,392
Systematic sequencing of renal carcinoma reveals inactivation of histone modifying genes
Dalgliesh, G. L., Furge, K., Greenman, C., Chen, L., Bignell, G., Butler, A., Davies, H., Edkins, S., Hardy, C., Latimer, C., et al. (2010) · Nature · doi:10.1038/nature08672 · Cited by 1,173
Genetic engineering of human pluripotent cells using TALE nucleases
Hockemeyer, D. F., Wang, H., Kiani, S., Lai, C. S., Gao, Q., Cassady, J. P., Cost, G. J., Zhang, L., Santiago, Y., Miller, J. C., et al. (2011) · Nature Biotechnology · doi:10.1038/nbt.1927 · Cited by 1,161
Self-citationHockemeyer, D. F., Soldner, F., Beard, C., Gao, Q., Mitalipova, M. M., DeKelver, R. C., Katibah, G. E., Amora, R., Boydston, E. A., Zeitler, B., et al. (2009) · Nature Biotechnology · doi:10.1038/nbt.1562 · Cited by 1,064
Self-citationA histone H3 lysine 27 demethylase regulates animal posterior development
Lan, F., Bayliss, P. E., Rinn, J. L., Whetstine, J. R., Wang, J. K., Chen, S., Iwase, S., Alpatov, R., Issaeva, I., Canaani, E., et al. (2007) · Nature · doi:10.1038/nature06192 · Cited by 808
Demethylation of H3K27 Regulates Polycomb Recruitment and H2A Ubiquitination
Lee, M. G., Villa, R., Trojer, P., Norman, J. A., Yan, K.-P., Reinberg, D., Croce, L. D., & Shiekhattar, R. (2007) · Science · doi:10.1126/science.1149042 · Cited by 789
Somatic mutations of the histone H3K27 demethylase gene UTX in human cancer
van Haaften, G., Dalgliesh, G. L., Davies, H., Chen, L., Bignell, G., Greenman, C., Edkins, S., Hardy, C., O'Meara, S., Teague, J., et al. (2009) · Nature Genetics · doi:10.1038/ng.349 · Cited by 784
Frequent mutations of chromatin remodeling genes in transitional cell carcinoma of the bladder
Gui, Y., Guo, G., Huang, Y., Hu, X., Tang, A., Gao, S., Wu, R., Chen, C., Li, X., Zhou, L., et al. (2011) · Nature Genetics · doi:10.1038/ng.907 · Cited by 759
Identification of JmjC domain-containing UTX and JMJD3 as histone H3 lysine 27 demethylases
Hong, S., Cho, Y., Yu, L., Yu, H., Veenstra, T. D., & Ge, K. (2007) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0707292104 · Cited by 716
Eggan, K. C., Akutsu, H., Loring, J. M., Jackson‐Grusby, L., Klemm, M., Rideout, W. M., Yanagimachi, R., & Jaenisch, R. (2001) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.101118898 · Cited by 613
Self-citationPTIP Associates with MLL3- and MLL4-containing Histone H3 Lysine 4 Methyltransferase Complex
Cho, Y., Hong, T., Hong, S., Guo, H. W., Yu, H., Kim, D., Guszczynski, T., Dressler, G. R., Copeland, T. D., Kalkum, M., et al. (2007) · Journal of Biological Chemistry · doi:10.1074/jbc.m701574200 · Cited by 534
SMRT-mediated repression of an H3K27 demethylase in progression from neural stem cell to neuron
Jepsen, K., Solum, D., Zhou, T., McEvilly, R. J., Kim, H., Glass, C. K., Hermanson, O., & Rosenfeld, M. G. (2007) · Nature · doi:10.1038/nature06270 · Cited by 407
Issaeva, I., Zonis, Y. A., Rozovskaia, T., Orlovsky, K., Croce, C. M., Nakamura, T., Mazo, A., Eisenbach, L., & Canaani, E. (2006) · Molecular and Cellular Biology · doi:10.1128/mcb.01506-06 · Cited by 386
Miller, S. A., Mohn, S. E., & Weinmann, A. S. (2010) · Molecular Cell · doi:10.1016/j.molcel.2010.10.028 · Cited by 373
Jankowska, A. M., Makishima, H., Tiu, R. V., Szpurka, H., Huang, Y., Traina, F., Visconte, V., Sugimoto, Y., Prince, C. J., O’Keefe, C. L., et al. (2011) · Blood · doi:10.1182/blood-2010-10-311019 · Cited by 345
H3K27 Demethylases, at Long Last
Swigut, T., & Wysocka, J. (2007) · Cell · doi:10.1016/j.cell.2007.09.026 · Cited by 327
The UTX gene escapes X inactivation in mice and humans
Greenfield, A. (1998) · Human Molecular Genetics · doi:10.1093/hmg/7.4.737 · Cited by 276
Lee, S., Lee, J. W., & Lee, S. (2011) · Developmental Cell · doi:10.1016/j.devcel.2011.11.009 · Cited by 260
Lee, J., Kim, D., Lee, S., Yang, Q.-H., Lee, D. K., Lee, S., Roeder, R. G., & Lee, J. W. (2009) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0902873106 · Cited by 215
Lee, J., Saha, P., Yang, Q.-H., Lee, S., Park, J. Y., Suh, Y., Lee, S., Chan, L., Roeder, R. G., & Lee, J. W. (2008) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0810100105 · Cited by 189
Dubois, N. C., Hofmann, D., Kaloulis, K., Bishop, J. M., & Trumpp, A. (2006) · genesis · doi:10.1002/dvg.20226 · Cited by 181
Sex-Specific Differences in Expression of Histone DemethylasesUtxandUtyin Mouse Brain and Neurons
Xu, J., Deng, X., Watkins, R., & Distèche, C. M. (2008) · Journal of Neuroscience · doi:10.1523/jneurosci.5382-07.2008 · Cited by 173
Structural basis for histone H3 Lys 27 demethylation by UTX/KDM6APreprint
Sengoku, T., & Yokoyama, S. (2011) · Genes & Development · doi:10.1101/gad.172296.111 · Cited by 165
The histone demethylase UTX enables RB-dependent cell fate controlPreprint
Wang, J. K., Tsai, M.-C., Poulin, G. B., Adler, A. S., Chen, S., Liu, H., Shi, Y., & Chang, H. Y. (2010) · Genes & Development · doi:10.1101/gad.1882610 · Cited by 152
Neurotrophin–3 is required for proper cerebellar development
Bates, B., Rios, M., Trumpp, A., Chen, C. S., Fan, G., Bishop, J. M., & Jaenisch, R. (1999) · Nature Neuroscience · doi:10.1038/5669 · Cited by 136
Self-citationLee, S., Lee, J., Lee, S.-K., & Lee, J. W. (2008) · Molecular Endocrinology · doi:10.1210/me.2008-0012 · Cited by 102
Wartman, L. D., Larson, D. E., Xiang, Z., Ding, L., Chen, K., Lin, L., Cahan, P., Klco, J. M., Welch, J. S., Li, C., et al. (2011) · Journal of Clinical Investigation · doi:10.1172/jci45284 · Cited by 101
Ananthanarayanan, M., Li, Y., Surapureddi, S., Balasubramaniyan, N., Ahn, J.-Y., Goldstein, J. A., & Suchy, F. J. (2011) · American Journal of Physiology-Gastrointestinal and Liver Physiology · doi:10.1152/ajpgi.00499.2010 · Cited by 71
Somatic cell nuclear transfer and derivation of embryonic stem cells in the mouse
Markoulaki, S., Meissner, A., & Jaenisch, R. (2008) · Methods · doi:10.1016/j.ymeth.2008.04.002 · Cited by 59
Self-citationCrucial Roles for Interactions between MLL3/4 and INI1 in Nuclear Receptor Transactivation
Lee, S., Kim, D., Goo, Y. H., Lee, Y. C., Lee, S., & Lee, J. W. (2009) · Molecular Endocrinology · doi:10.1210/me.2008-0455 · Cited by 49
Kim, D., Lee, J., Lee, B., & Lee, J. W. (2009) · Molecular Endocrinology · doi:10.1210/me.2009-0099 · Cited by 47
Lee, S., Roeder, R. G., & Lee, J. W. (2009) · Progress in molecular biology and translational science · doi:10.1016/s1877-1173(09)87010-5 · Cited by 36
Jmjd3 activates Mash1 gene in RA‐induced neuronal differentiation of P19 cells
Dai, J., Lu, J., Zhang, Y., & Shen, Y. (2010) · Journal of Cellular Biochemistry · doi:10.1002/jcb.22703 · Cited by 29
Genetic Heterogeneity and Chromatin Modifiers in Renal Clear Cell Carcinoma
Staller, P. (2010) · Future Oncology · doi:10.2217/fon.10.50 · Cited by 9
Cited by
Sorted by citations
Mammalian Y chromosomes retain widely expressed dosage-sensitive regulators
Bellott, D. W., Hughes, J. F., Skaletsky, H., Brown, L. G., Pyntikova, T., Cho, T.-J., Koutseva, N., Zaghlul, S., Graves, T., Rock, S., et al. (2014) · Nature · doi:10.1038/nature13206 · Cited by 658
The interplay of epigenetic marks during stem cell differentiation and development
Atlasi, Y., & Stunnenberg, H. G. (2017) · Nature Reviews Genetics · doi:10.1038/nrg.2017.57 · Cited by 583
Booth, L. N., & Brunet, A. (2016) · Molecular Cell · doi:10.1016/j.molcel.2016.05.013 · Cited by 499
Tumor-suppressor genes that escape from X-inactivation contribute to cancer sex bias
Dunford, A. J., Weinstock, D. M., Savova, V., Schumacher, S. E., Cleary, J. P., Yoda, A., Sullivan, T. J., Hess, J. M., Gimelbrant, A. A., Beroukhim, R., et al. (2016) · Nature Genetics · doi:10.1038/ng.3726 · Cited by 471
Contrasting roles of histone 3 lysine 27 demethylases in acute lymphoblastic leukaemia
Ntziachristos, P., Tsirigos, A., Welstead, G. G., Trimarchi, T., Bakogianni, S., Xu, L., Loizou, E., Holmfeldt, L., Strikoudis, A., King, B., et al. (2014) · Nature · doi:10.1038/nature13605 · Cited by 377
Self-citation
Metadata
- Authors
- Welstead, G. G., Creyghton, M. P., Bilodeau, S., Cheng, A. W., Markoulaki, S., Young, R. A., & Jaenisch, R.
- Affiliations
- Whitehead Institute for Biomedical Research (US)
- ORCID
- Venue
- Proceedings of the National Academy of Sciences
- Publisher
- National Academy of Sciences
- Published
- 2012-07-23
- Volume
- 109
- Issue
- 32
- Pages
- 13004-13009
- ISSN
- 0027-8424 (ISSN-L)
- 1091-6490
- PMC
- PMC3420177
- OpenAlex
- W1985370709
- Cited by
- 194
- References
- 41
- Citations by year
- 2026: 4 · 2025: 7 · 2024: 10 · 2023: 12 · 2022: 13 · 2021: 16 · 2020: 19 · 2019: 15 · 2018: 15 · 2017: 15 · 2016: 24 · 2015: 13 · 2014: 15 · 2013: 13 · 2012: 3
- FWCI
- 5.65
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Locations
- Proceedings of the National Academy of Sciences (publishedVersion)
- Europe PMC (PubMed Central) (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Data Archiving and Networked Services (DANS) (submittedVersion)
- DSpace@MIT (Massachusetts Institute of Technology) (submittedVersion, cc-by-nc)
- KNAW Research Portal (The Royal Netherlands Academy of Arts and Sciences) (submittedVersion)
- Funders
- National Institutes of Health (HD 045022)
- Eunice Kennedy Shriver National Institute of Child Health and Human Development (R01HD045022, R37HD045022, 5-F32-F32HD055038, F32HD055038)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Epigenetics and DNA Methylation
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Pluripotent Stem Cells Research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Developmental Biology and Gene Regulation
- Keywords
- KDM6A, H3K27me3 demethylase, embryonic development, X-linked genes, UTY, pluripotency, bivalent genes, neural tube closure, somitogenesis, cardiac anomalies, germ layer differentiation, teratoma, histone demethylation, JMJD3, embryoid body differentiation
- MeSH terms
- Animals, Female, Male, Mice, Mutant Strains, Sex Factors, Gene Expression Regulation, Developmental, Embryonic Development, Chromatin Immunoprecipitation, Mice, Embryonic Stem Cells, Gene Knockout Techniques, Histone Demethylases, Jumonji Domain-Containing Histone Demethylases
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review