The DOI matches its Crossref record; 3 of the 3 references it cites were found in a registry or an index.
The Burmese python genome reveals the molecular basis for extreme adaptation in snakes
Open accessAbstract
Significance: The molecular basis of morphological and physiological adaptations in snakes is largely unknown. Here, we study these phenotypes using the genome of the Burmese python ( Python molurus bivittatus ), a model for extreme phenotypic plasticity and metabolic adaptation. We discovered massive rapid changes in gene expression that coordinate major changes in organ size and function after feeding. Many significantly responsive genes are associated with metabolism, development, and mammalian diseases. A striking number of genes experienced positive selection in ancestral snakes. Such genes were related to metabolism, development, lungs, eyes, heart, kidney, and skeletal structure—all highly modified features in snakes. Snake phenotypic novelty seems to be driven by the system-wide coordination of protein adaptation, gene expression, and changes in genome structure.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
De novo assembly of human genomes with massively parallel short read sequencing
Li, R., Zhu, H., Ruan, J., Qian, W., Fang, X., Shi, Z., Li, Y., Li, S., Shan, G., Kristiansen, K., et al. (2010) · Genome Research · doi:10.1101/gr.097261.109 · Cited by 2,926 · cited 1×
“The genome was assembled using SOAPdenovo (39) and Newbler (Roche), and alternate assemblies were merged (40).”
EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates
Vilella, A. J., Severin, J., Ureta-Vidal, A., Heng, L., Durbin, R., & Birney, E. (2009) · Genome Research · doi:10.1101/gr.073585.107 · Cited by 1,238
Evolution at Two Levels: On Genes and Form
Carroll, S. B. (2005) · PLoS Biology · doi:10.1371/journal.pbio.0030245 · Cited by 882
Cited by
The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system
Vonk, F. J., Casewell, N. R., Henkel, C. V., Heimberg, A. M., Jansen, H. J., McCleary, R. J. R., Kerkkamp, H. M. E., Vos, R. A., Guerreiro, I., Calvete, J. J., et al. (2013) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1314702110 · Cited by 474
Self-citationThree crocodilian genomes reveal ancestral patterns of evolution among archosaurs
Green, R. E., Braun, E. L., Armstrong, J., Earl, D., Nguyen, N., Hickey, G., Vandewege, M. W., St. John, J. A., Capella-Gutiérrez, S., Castoe, T. A., et al. (2014) · Science · doi:10.1126/science.1254449 · Cited by 359
Self-citationThe Genome 10K Project: A Way Forward
Koepfli, K.-P., Paten, B., Scientists, T. G. 1. C. O., & O’Brien, S. J. (2015) · Annual Review of Animal Biosciences · doi:10.1146/annurev-animal-090414-014900 · Cited by 311
Evolution and Diversity of Transposable Elements in Vertebrate Genomes
Sotero-Caio, C. G., Platt, R. N., Suh, A., & Ray, D. A. (2017) · Genome Biology and Evolution · doi:10.1093/gbe/evw264 · Cited by 283
Self-citationIntegrative Physiology of Fasting
Secor, S. M. (2016) · Comprehensive physiology · doi:10.1002/cphy.c150013 · Cited by 183
Metadata
- Authors
- Castoe, T. A., de Koning, A. P. J., Hall, K. T., Card, D. C., Schield, D. R., Fujita, M. K., Ruggiero, R. P., Degner, J. F., Daza, J. M., Gu, W., Reyes-Velasco, J., Shaney, K. J., Castoe, J. M., Fox, S. E., Poole, A. W., Polanco, D., Dobry, J., Vandewege, M. W., Li, Q., Schott, R. K., Kapusta, A., Minx, P., Feschotte, C., Uetz, P., Ray, D. A., Hoffmann, F. G., Bogden, R., Smith, E. N., Chang, B. S. W., Vonk, F. J., Casewell, N. R., Henkel, C. V., Richardson, M. K., Mackessy, S. P., Bronikowski, A. M., Yandell, M., Warren, W. C., Secor, S. M., & Pollock, D. D.
- Venue
- Proceedings of the National Academy of Sciences
- Published
- 2013-12-02
- Volume
- 110
- Issue
- 51
- Pages
- 20645-20650
- ISSN
- 0027-8424 (ISSN-L)
- 1091-6490
- OpenAlex
- W2017454882
- Cited by
- 287
- References
- 3
- FWCI
- 13.18
- Type
- journal article
- Language
- en
- Open access
- green
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
How to cite
Cite CoChat for the checks on this page, and the paper for its own findings.
- This page
- CoChat. (2026). Citation check: The Burmese python genome reveals the molecular basis for extreme adaptation in snakes. https://app.cochat.ai/papers/10.1073/pnas.1314475110
- The paper
- Castoe, T. A., de Koning, A. P. J., Hall, K. T., Card, D. C., Schield, D. R., Fujita, M. K., Ruggiero, R. P., Degner, J. F., Daza, J. M., Gu, W., Reyes-Velasco, J., Shaney, K. J., Castoe, J. M., Fox, S. E., Poole, A. W., Polanco, D., Dobry, J., Vandewege, M. W., Li, Q., . . . Pollock, D. D. (2013). The Burmese python genome reveals the molecular basis for extreme adaptation in snakes. Proceedings of the National Academy of Sciences. https://doi.org/10.1073/pnas.1314475110
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.