Cited by 229Cytokine Signaling Pathways and InteractionsProtein Kinase Regulation and GTPase SignalingProtein Tyrosine Phosphatases

Structure of the pseudokinase-kinase domains from protein kinase TYK2 reveals a mechanism for Janus kinase (JAK) autoinhibition

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Lupardus, Patrick J., Ultsch, Mark, Wallweber, Heidi, Bir Kohli, Pawan, Johnson, Adam R., Eigenbrot, Charles·2014·Proceedings of the National Academy of Sciences

Abstract

Significance: Cytokine signaling is essential for cell growth, hematopoiesis, and immune system function. Cytokine-mediated receptor dimerization induces intracellular activation of receptor-bound Janus kinases (JAKs), which then induce downstream transcriptional responses. We have determined a two-domain crystal structure containing the pseudokinase and kinase domains from the JAK family member TYK2, which identifies an inhibitory interaction interface between the two domains. Cancer-associated mutations found in other JAK family members map to this inhibitory interaction site, whereas analogous mutations in TYK2 cause in vitro activation of the kinase. This study identifies a mechanism for pseudokinase-mediated autoinhibition of the TYK2 kinase domain and suggests a means by which cancer-associated JAK mutations induce aberrant kinase activity.

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Crossref · 10.1073/pnas.1401180111

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  • JAKs have four structural domains: N-terminal FERM, SH2, catalytically active JH1 kinase, and pseudo-kinase JH2; JH2 is enzymatically inactive but represses kinase activity.

    “Recent X-ray crystal structural studies have provided a clearer delineation of JAK structural architecture, with four distinct domains: 1) N-terminal band 4.1, ezrin, radixin, moesin (FERM) domain; 2) SH2 domain; 3) the catalytically active JH1 kinase domain located at the C-terminal end; and 4) the pseudo-kinase domain (JH2), located adjacent to it, which is enzymatically inactive but has a cruc”

    From Targeting Janus Kinases and Signal Transducer and Activator of Transcription 3 To Treat Inflammation, Fibrosis, and Cancer: Rationale, Progress, and Caution (2020) · cites this paper as Lupardus et al., 2014

    The introductory passage describes four JAK domains in the stated order, and the Results show that the TYK2 pseudokinase inhibits kinase activity. But the introduction also reports weak catalytic activity in the JAK2 pseudokinase, so the categorical claim that JH2 is enzymatically inactive is not supported. Our copy provides no page number for these passages. (LLM, conf=0.90)

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Research works printed but not linked: 17

  1. [20]Lucet IS, et al. (2006) The structural basis of Janus kinase 2 inhibition by a potent and specific pan-Janus kinase inhibitor. Blood 107(1):176 -183.
  2. [21]Chrencik JE, et al. (2010) Structural and thermodynamic characterization of the TYK2 and JAK3 kinase domains in complex with CP-690550 and CMP-6. J Mol Biol 400(3): 413 -433.
  3. [22]Boggon TJ, Li Y, Manley PW, Eck MJ (2005) Crystal structure of the Jak3 kinase domain in complex with a staurosporine analog. Blood 106(3):996 -1002.
  4. [23]Scott LM (2011) The JAK2 exon 12 mutations: A comprehensive review. AmJ Hematol 86(8):668 -676.
  5. [24]Liang J, et al. (2013) Lead optimization of a 4-aminopyridine benzamide scaffold to identify potent, selective, and orally bioavailable TYK2 inhibitors. J Med Chem 56(11): 4521 -4536.
  6. [25]Tsui V, et al. (2011) A new regulatory switch in a JAK protein kinase. Proteins 79(2): 393 -401.
  7. [26]Flex E, et al. (2008) Somatically acquired JAK1 mutations in adult acute lymphoblastic leukemia. J Exp Med 205(4):751 -758.
  8. [27]Sato T, et al. (2008) Functional analysis of JAK3 mutations in transient myeloproliferative disorder and acute megakaryoblastic leukaemia accompanying Down syndrome. Br J Haematol 141(5):681 -688.
  9. [28]Bercovich D, et al. (2008) Mutations of JAK2 in acute lymphoblastic leukaemias associated with Down ' s syndrome. Lancet 372(9648):1484 -1492.
  10. [29]Mullighan CG, et al. (2009) JAK mutations in high-risk childhood acute lymphoblastic leukemia. Proc Natl Acad Sci USA 106(23):9414 -9418.
  11. [30]Kearney L, et al. (2009) Specific JAK2 mutation (JAK2R683) and multiple gene deletions in Down syndrome acute lymphoblastic leukemia. Blood 113(3):646 -648.
  12. [31]Gaikwad A, et al. (2009) Prevalence and clinical correlates of JAK2 mutations in Down syndrome acute lymphoblastic leukaemia. Br J Haematol 144(6):930 -932.
  13. [32]Korniski B, et al. (2010) Expression, purification, and characterization of TYK-2 kinase domain, a member of the Janus kinase family. Biochem Biophys Res Commun 396(2): 543 -548.
  14. [33]Dusa A, et al. (2008) Substitution of pseudokinase domain residue Val-617 by large non-polar amino acids causes activation of JAK2. J Biol Chem 283(19):12941 -12948.
  15. [34]Dusa A, Mouton C, Pecquet C, Herman M, Constantinescu SN (2010) JAK2 V617F constitutive activation requires JH2 residue F595: A pseudokinase domain target for specific inhibitors. PLoS One 5(6):e11157.
  16. [35]Boudeau J, Miranda-Saavedra D, Barton GJ, Alessi DR (2006) Emerging roles of pseudokinases. Trends Cell Biol 16(9):443 -452.
  17. [37]Hall T, et al. (2010) Expression, purification, characterization and crystallization of non- and phosphorylated states of JAK2 and JAK3 kinase domain. Protein Expr Purif 69(1):54 -63.

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Authors
Lupardus, P. J., Ultsch, M., Wallweber, H., Bir Kohli, P., Johnson, A. R., & Eigenbrot, C.
Affiliations
  • Departments of aStructural Biology and
  • Biochemical and Cellular Pharmacology, Genentech, South San Francisco, CA 94080
  • Genentech (US)
Venue
Proceedings of the National Academy of Sciences
Published
2014-05-19
Volume
111
Issue
22
Pages
8025-8030
ISSN
  • 0027-8424 (ISSN-L)
  • 1091-6490
OpenAlex
W2141682274
Cited by
229
References
2
Citations by year
2026: 21 · 2025: 17 · 2024: 21 · 2023: 30 · 2022: 22 · 2021: 15 · 2020: 15 · 2019: 20 · 2018: 16 · 2017: 13 · 2016: 16 · 2015: 18 · 2014: 5
FWCI
8.37
Type
journal article
Language
en
Open access
Locations
  • Proceedings of the National Academy of Sciences (publishedVersion)
  • Europe PMC (PubMed Central) (publishedVersion)
  • PubMed Central (publishedVersion)
  • PubMed (publishedVersion)
Topics
  • Health Sciences › Medicine › Oncology › Cytokine Signaling Pathways and Interactions
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Kinase Regulation and GTPase Signaling
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Tyrosine Phosphatases
Keywords
TYK2, Janus kinase, pseudokinase domain, protein kinase structure, JAK2 V617F mutation, receptor dimerization, kinase activation mechanism, cytokine signaling
MeSH terms
Animals, Cell Line, Enzyme Activation, Humans, Insecta, Mutation, Neoplasms, Structure-Activity Relationship, Signal Transduction, Protein Structure, Tertiary, Crystallography, X-Ray, Dimerization, Janus Kinase 1, Janus Kinase 2, Janus Kinase 3, TYK2 Kinase

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