Electron tomography analysis of envelope glycoprotein trimers on HIV and simian immunodeficiency virus virions
Open accessAbstract
We used electron tomography to directly visualize trilobed presumptive envelope (env) glycoprotein structures on the surface of negatively stained HIV type 1 (HIV-1) and simian immunodeficiency virus (SIV) virions. Wild-type HIV-1 and SIV virions had an average of 8-10 trimers per virion, consistent with predictions based on biochemical evidence. Mutant SIVs, biochemically demonstrated to contain high levels of the viral env proteins, averaged 70-79 trimers per virion in tomograms. These correlations strongly indicate that the visualized trimers represent env spikes. The env trimers were without obvious geometric distribution pattern or preferred rotational orientation. Combined with biochemical analysis of gag/env ratios in virions, these trimer counts allow calculation of the number of gag molecules per virion, yielding an average value of approximately 1400. Virion and env dimensions were also determined. Image-averaging analysis of SIV env trimers revealed a distinct chirality and strong concordance with recent molecular models. The results directly demonstrate the presence of env trimers on the surface of AIDS virus virions, albeit at numbers much lower than generally appreciated, and have important implications for understanding virion formation, virus interactions with host cells, and virus neutralization.
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The number of Gag molecules (about 2,000 per nascent particle) exceeds the smaller number of Env trimers (about 10 per virion).
“even though the number of Gag molecules (about 2,000 per nascent particle 56 ) exceeds the smaller number of Env trimers (about 10 per virion). 57”
From Revealing viral and cellular dynamics of HIV-1 at the single-cell level during early treatment periods (2023) · cites this paper as [57]
Cites
Fine structure of human immunodeficiency virus (HIV) and immunolocalization of structural proteins
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Chertova, E., Chertov, O., Coren, L. V., Roser, J. D., Trubey, C. M., Bess, J. W., Sowder, R. C., Barsov, E., Hood, B. L., Fisher, R. J., et al. (2006) · Journal of Virology · doi:10.1128/jvi.01013-06 · Cited by 462 · see citing works
Self-citationRecent advances in HIV-1 Gag inhibitor design and development
Dick, A., & Cocklin, S. (2020) · Molecules · doi:10.3390/molecules25071687 · Cited by 28 · see citing works
Viral and host factors regulating HIV-1 envelope protein trafficking and particle incorporation
Anokhin, B., & Spearman, P. (2022) · Viruses · doi:10.3390/v14081729 · Cited by 21 · see citing works
Sun, W., Reyes-Serratos, E., Barilla, D., Santos, J. R. L., Bujold, M., Graves, S., & Marcet-Palacios, M. (2019) · PLOS ONE · doi:10.1371/journal.pone.0224965 · Cited by 6 · see citing works
Otte, F., Zhang, Y., Spagnuolo, J., Thielen, A., Däumer, M., Wiethe, C., Stoeckle, M., Kusejko, K., Klein, F., Metzner, K. J., et al. (2023) · Cell Reports Methods · doi:10.1016/j.crmeth.2023.100485 · Cited by 4 · see citing works
“Benchmarking experiments confirmed a high test specificity and sensitivity of GERDA compared with all other molecular detection methods tested (Figures 2D–2F), even though the number of Gag molecules (about 2,000 per nascent particle(56)) exceeds the smaller number of Env trimers (about 10 per virion).(57) For benchma…”
Result
- Authors
- Zhu, P., Chertova, E., Bess, J., Lifson, J. D., Arthur, L. O., Liu, J., Taylor, K. A., & Roux, K. H.
- Affiliations
- Florida State University (US)
- Venue
- Proceedings of the National Academy of Sciences
- Publisher
- National Academy of Sciences
- Published
- 2003-12-10
- Volume
- 100
- Issue
- 26
- Pages
- 15812-15817
- ISSN
- 0027-8424 (ISSN-L)
- 1091-6490
- PMC
- PMC307650
- OpenAlex
- W2095678514
- Cited by
- 431
- References
- 1
- Citations by year
- 2026: 8 · 2025: 13 · 2024: 20 · 2023: 14 · 2022: 17 · 2021: 22 · 2020: 23 · 2019: 23 · 2018: 14 · 2017: 17 · 2016: 14 · 2015: 14 · 2014: 19 · 2013: 27 · 2012: 32
- FWCI
- 6.21
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Proceedings of the National Academy of Sciences (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Funders
- National Institutes of Health (5r21ai044291-02)
- U.S. Public Health Service (N01-C0-124000)
- National Institute of General Medical Sciences (GM 30598, R01GM030598)
- National Institute of Allergy and Infectious Diseases (R21 AI44291, R01AI055461)
- Topics
- Life Sciences › Immunology and Microbiology › Virology › HIV Research and Treatment
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Structural Biology › Advanced Electron Microscopy Techniques and Applications
- Life Sciences › Immunology and Microbiology › Immunology › T-cell and Retrovirus Studies
- Keywords
- HIV-1, simian immunodeficiency virus, envelope glycoprotein, Env trimer, viral spikes, virion structure, image averaging, virion formation, virus neutralization
- MeSH terms
- HIV, Image Processing, Computer-Assisted, Tomography, X-Ray Computed, Virion, Simian Immunodeficiency Virus, Gene Products, env, AIDS Vaccines
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