The DOI matches its Crossref record; 39 of the 41 references it cites were found in a registry or an index.
Origin of the metazoan phyla: Molecular clocks confirm paleontological estimates
Open accessAbstract
The time of origin of the animal phyla is controversial. Abundant fossils from the major animal phyla are found in the Cambrian, starting 544 million years ago. Many paleontologists hold that these phyla originated in the late Neoproterozoic, during the 160 million years preceding the Cambrian fossil explosion. We have analyzed 18 protein-coding gene loci and estimated that protostomes (arthropods, annelids, and mollusks) diverged from deuterostomes (echinoderms and chordates) about 670 million years ago, and chordates from echinoderms about 600 million years ago. Both estimates are consistent with paleontological estimates. A published analysis of seven gene loci that concludes that the corresponding divergence times are 1,200 and 1,000 million years ago is shown to be flawed because it extrapolates from slow-evolving vertebrate rates to faster-evolving invertebrate rates, as well as in other ways.
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“Depending on the proteins, calibration points and rate substitution models used, these estimates range from 600 to 1200 Mya (Wray et al., 1996;Ayala et al., 1998;Bromham et al., 1998;Gu, 1998;Cutler, 2000).”
From The last common bilaterian ancestor (2002) · cites this paper as Ayala et al., 1998
In the citing paper
“Our data suggest that, inconsistent with most molecular clock estimates but consistent with paleontological predictions (e.g., refs. 13 and 14), bilaterians do not have a significant precambrian evolutionary history.”
From Estimating metazoan divergence times with a molecular clock (2004) · cites this paper as [13]
In the citing paper
“The combination of a rate constancy test with high resolution of long DNA sequences (two data sets totaling over 7,000 bp), use of a wide range of taxa and fossil dates (rather than reliance on a single calibration rate), and a maximum likelihood analysis makes this method more reliable than previous molecular dating techniques (11).”
From Testing the Cambrian explosion hypothesis by using a molecular dating technique (1998) · cites this paper as [23]
In the citing paper
“Molecular phylogenies based on sequence comparisons of protein domains shared by all bilaterians suggest that the time of divergence of these proteins may extend back to 600–1,200 million years (megaannuum; Ma) ago (11–16).”
From Precambrian animal diversity: Putative phosphatized embryos from the Doushantuo Formation of China (2000) · cites this paper as [12]
In the citing paper
“Among the limitations noted are nucleotide compositional bias, among site rate variation, and heterogeneous rates of evolution across lineages (12–16).”
From Evaluating hypotheses of basal animal phylogeny using complete sequences of large and small subunit rRNA (2001) · cites this paper as [15]
Citations
Cites
Thompson, J. D., Higgins, D. G., & Gibson, T. J. (1994) · Nucleic Acids Research · doi:10.1093/nar/22.22.4673 · Cited by 64,617
The neighbor-joining method: a new method for reconstructing phylogenetic trees.
Saitou, N., & Nei, M. (1987) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a040454 · Cited by 59,959
The Advanced Theory of Statistics.
Clarke, G. M., Kendall, M. G., & Stuart, A. (1978) · Journal of the Royal Statistical Society Series A (General) · doi:10.2307/2344782 · Cited by 6,727
Atlas of protein sequence and structure
Chang, M.-Y., Dayhoff, M. O., Eck, R. V., & Sochard, M. R. (1965) · NASA Technical Reports Server (NASA) · Cited by 4,383
Evolutionary divergence and convergence in proteins.
ZUCKERKANDL, E., & PAULING, L. (1965) · Evolving Genes and Proteins · doi:10.1016/b978-1-4832-2734-4.50017-6 · Cited by 3,020
Atlas of Protein Sequence and Structure, 1972.
Fitch, W. M., & Dayhoff, M. O. (1973) · Systematic Zoology · doi:10.2307/2412105 · Cited by 2,454
Bryson, V., & Vogel, H. J. (1965) · Science · doi:10.1126/science.147.3653.68 · Cited by 1,343
The causes of molecular evolution
Gillespie, J. H. (1992) · Choice Reviews Online · doi:10.5860/choice.30-2064 · Cited by 1,214
Yang, Z. (1993) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a040082 · Cited by 1,040
(1992) · Cambridge University Press eBooks · doi:10.1017/cbo9780511601064 · Cited by 902
Research works printed but not linked: 16
- T Dobzhansky, F J Ayala, G L Stebbins, J W Valentine Evolution (Freeman, San Francisco, 1977).
- J W Valentine, S M Awramik, P W Signor, P M Sadler Evol Biol 25, 279–356 (1991).
- S J Gould Wonderful Life (Norton, New York, 1989).
- 10.1111/j.1096-3642.1989.tb02257.x · DOI
- H Phillipe, A Chenuil, A Adoutte Development (Cambridge, UK) Suppl 1994, 15–25 (1994).
- B Runnegar Paleontology 29, 1–24 (1986).
- M Nei, J C Stephens, N Saitou Mol Biol Evol 2, 66–85 (1985).
- G B Golding Mol Biol Evol 1, 125–142 (1983).
- L Jin, M Nei Mol Biol Evol 10, 1396–1402 (1990).
- Z Yang Mol Biol Evol 10, 1396–1402 (1993).
- N Takezaki, A Rzhetsky, M Nei Mol Biol Evol 12, 823–833 (1995).
- N Saitou, M Nei Mol Biol Evol 4, 406–425 (1987).
- W-H Li Molecular Evolution (Sinauer, Sunderland, MA, 1997).
- J W Valentine Patterns of Evolution, ed A Hallam (Elsevier, Amsterdam), pp. 27–58 (1977).
- T Ohita, M Nei Mol Biol Evol 11, 469–482 (1994).
- R R Sokal, F J Rohlf Biometry (Freeman, 2nd Ed., New York, 1981).
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Lowe, C. J. (2009) · Oxford University Press eBooks · doi:10.1093/acprof:oso/9780199549429.003.0010
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Tautz, D. (1999) · Trends in Genetics · doi:10.1016/s0168-9525(99)01700-x
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(2009) · Oxford University Press eBooks · doi:10.1093/acprof:oso/9780199549429.002.0008
Molecules and Evolutionary History
Collins, A. G. (1999) · The Paleontological Society Special Publications · doi:10.1017/s2475262200014118
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Monk, T., Mani, S., Hurley, P., & André, V. S. (2026) · Neural Computation · doi:10.1162/neco.a.1569
Ediacaran fossils from the southwestern Great Basin, United States
HAGADORN, J. W., & WAGGONER, B. (2000) · Journal of Paleontology · doi:10.1017/s0022336000031553 · Cited by 51
Dewel (2000) · doi:10.1002/(sici)1097-4687(200001)243:1
Collins, A. G. (2000) · doi:10.1666/0094-8373(2000)026
Laflamme (2004) · doi:10.1666/0022-3360(2004)078
Metadata
- Authors
- Ayala, F. J., Rzhetsky, A., & Ayala, F. J.
- Affiliations
- Institute of Molecular Evolutionary Genetics, Pennsylvania State University, University Park, PA 16802; Columbia Genome Center, Columbia University, New York, NY 10032; and Department of Ecology and Evolutionary Biology, University of California, Irvine, CA 92697
- Pennsylvania State University (US)
- ORCID
- Rzhetsky, Andrey
- Venue
- Proceedings of the National Academy of Sciences
- Publisher
- National Academy of Sciences
- Published
- 1998-01-20
- Volume
- 95
- Issue
- 2
- Pages
- 606-611
- ISSN
- 0027-8424 (ISSN-L)
- 1091-6490
- PMC
- PMC18467
- OpenAlex
- W2146480768
- Cited by
- 342
- References
- 41
- Citations by year
- 2026: 1 · 2024: 7 · 2023: 6 · 2022: 2 · 2021: 3 · 2020: 1 · 2019: 4 · 2018: 1 · 2017: 5 · 2016: 7 · 2015: 5 · 2014: 8 · 2013: 13 · 2012: 7
- FWCI
- 41.96
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Locations
- Proceedings of the National Academy of Sciences (publishedVersion)
- Europe PMC (PubMed Central) (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- eScholarship (California Digital Library) (submittedVersion, cc-by)
- Funders
- National Institutes of Health (5p01gm042397-05)
- National Institute of General Medical Sciences (GM 42397)
- Topics
- Physical Sciences › Earth and Planetary Sciences › Paleontology › Evolution and Paleontology Studies
- Life Sciences › Agricultural and Biological Sciences › Animal Science and Zoology › Marine Invertebrate Physiology and Ecology
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Phylogenetic Studies
- Keywords
- divergence time estimation, Cambrian explosion, Neoproterozoic, protein-coding genes, molecular clock rates, invertebrate evolution, arthropods, Annelida, Mollusca, Echinodermata
- MeSH terms
- Animals, Fossils, Phylogeny, Proteins, Evolution, Molecular
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