The DOI matches its Crossref record; 29 of the 30 references it cites were found in a registry or an index.
A deletion in a photoreceptor-specific nuclear receptor mRNA causes retinal degeneration in the rd7 mouse
Open accessAbstract
The rd7 mouse, an animal model for hereditary retinal degeneration, has some characteristics similar to human flecked retinal disorders. Here we report the identification of a deletion in a photoreceptor-specific nuclear receptor (mPNR) mRNA that is responsible for hereditary retinal dysplasia and degeneration in the rd7 mouse. mPNR was isolated from a pool of photoreceptor-specific cDNAs originally created by subtractive hybridization of mRNAs from normal and photoreceptorless rd mouse retinas. Localization of the gene corresponding to mPNR to mouse Chr 9 near the rd7 locus made it a candidate for the site of the rd7 mutation. Northern analysis of total RNA isolated from rd7 mouse retinas revealed no detectable signal after hybridization with the mPNR cDNA probe. However, with reverse transcription-PCR, we were able to amplify different fragments of mPNR from rd7 retinal RNA and to sequence them directly. We found a 380-nt deletion in the coding region of the rd7 mPNR message that creates a frame shift and produces a premature stop codon. This deletion accounts for more than 32% of the normal protein and eliminates a portion of the DNA-binding domain. In addition, it may result in the rapid degradation of the rd7 mPNR message by the nonsense-mediated decay pathway, preventing the synthesis of the corresponding protein. Our findings demonstrate that mPNR expression is critical for the normal development and function of the photoreceptor cells.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
In the citing paper
“The Nr2e3rd7 mouse has an exon 4,5 deletion in the Nr2e3 gene, causing a frameshift mutation that results in a premature stop codon”
From Retinal ultrastructure of murine models of dry age-related macular degeneration (AMD) (2010) · cites this paper as Akhmedov et al., 2000
In the citing paper
“There is additional retinal vascular attenuation and mottled retinal pigmentation at 16 months of age”
From Retinal ultrastructure of murine models of dry age-related macular degeneration (AMD) (2010) · cites this paper as Akhmedov et al., 2000
In the citing paper
“ERGs of homozygous Nr2e3rd7 mice show progressive reduction of both rod and cone signals starting at 5 months of age, and wave amplitudes were 50% of normal by 16 months of age”
From Retinal ultrastructure of murine models of dry age-related macular degeneration (AMD) (2010) · cites this paper as Akhmedov et al., 2000
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
The nuclear receptor superfamily: the second decade
Mangelsdorf, D. J., Thummel, C., Beato, M., Herrlich, P., Schütz, G., Umesono, K., Blumberg, B., Kastner, P., Mark, M., Chambon, P., et al. (1995) · Cell · doi:10.1016/0092-8674(95)90199-x · Cited by 6,964
The RXR heterodimers and orphan receptors
Mangelsdorf, D. J., & Evans, R. M. (1995) · Cell · doi:10.1016/0092-8674(95)90200-7 · Cited by 3,165
Defective myosin VIIA gene responsible for Usher syndrome type IB
Well, D., Blanchard, S., Kaplan, J., Guilford, P., Gibson, F., Walsh, J., Mburu, P., Varela, A., Levilliers, J., Weston, M. D., et al. (1995) · Nature · doi:10.1038/374060a0 · Cited by 1,068
Rickman, C. B., Li, T., Danciger, M., Baxter, L. C., Applebury, M., & Farber, D. B. (1990) · Nature · doi:10.1038/347677a0 · Cited by 852
Self-citationMultiplicity generates diversity in the retinoic acid signalling pathways
Leid, M., Kastner, P., & Chambon, P. (1992) · Trends in Biochemical Sciences · doi:10.1016/0968-0004(92)90014-z · Cited by 821
A type VII myosin encoded by the mouse deafness gene shaker-1
Gibson, F., Walsh, J. C., Mburu, P., Varela, A., Brown, K. A., Antonio, M., Beisel, K. W., Steel, K. P., & Brown, S. D. M. (1995) · Nature · doi:10.1038/374062a0 · Cited by 682
McLaughlin, M. E., Sandberg, M. A., Berson, E. L., & Dryja, T. P. (1993) · Nature Genetics · doi:10.1038/ng0693-130 · Cited by 602
Increasing the Complexity of Coactivation in Nuclear Receptor Signaling
Freedman, L. P. (1999) · Cell · doi:10.1016/s0092-8674(00)80708-4 · Cited by 437
Culbertson, M. R., & Culbertson, M. R. (1999) · Trends in Genetics · doi:10.1016/s0168-9525(98)01658-8 · Cited by 400
Travis, G. H., Brennan, M. B., Danielson, P. E., Kozak, C. A., & Sutcliffe, J. G. (1989) · Nature · doi:10.1038/338070a0 · Cited by 400
Self-citationA candidate gene for the mouse mutation tubby
Noben‐Trauth, K., Naggert, J. K., North, M. A., & Nishina, P. M. (1996) · Nature · doi:10.1038/380534a0 · Cited by 356
Self-citationOrphan nuclear receptors—new ligands and new possibilities: Figure 1.Preprint
Blumberg, B., & Evans, R. M. (1998) · Genes & Development · doi:10.1101/gad.12.20.3149 · Cited by 304
Methodology in mammalian genetics
Burdette, W. J. (1963) · Holden-Day eBooks · doi:10.5962/bhl.title.6428 · Cited by 302
Identification of a photoreceptor cell-specific nuclear receptor
Kobayashi, M., Takezawa, S., Hara, K., Yu, R. T., Umesono, Y., Agata, K., Taniwaki, M., Yasuda, K., & Umesono, K. (1999) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.96.9.4814 · Cited by 215
Hagstrom, S. A., North, M. A., Nishina, P. M., Berson, E. L., & Dryja, T. P. (1998) · Nature Genetics · doi:10.1038/ng0298-174 · Cited by 204
Self-citationIsolation of DNA from biological specimens without extraction with phenol.
Buffone, G. J., & Darlington, G. J. (1985) · Clinical Chemistry · doi:10.1093/clinchem/31.1.164 · Cited by 192
TULP1 mutation in two extended Dominican kindreds with autosomal recessive Retinitis pigmentosa
Banerjee, P., Kleyn, P. W., Knowles, J. A., Lewis, C. A., Ross, B. M., Parano, E., Kovats, S. G., Lee, J. J., Penchaszadeh, G. K., Ott, J., et al. (1998) · Nature Genetics · doi:10.1038/ng0298-177 · Cited by 153
Mouse fundus photography and angiography: a catalogue of normal and mutant phenotypes.
Hawes, N. L., Smith, R. S., Chang, B., Davisson, M. T., Heckenlively, J. R., & John, S. W. M. (1999) · PubMed · Cited by 143
Self-citationAdamson, M. C., Silver, J. E., & Kozak, C. A. (1991) · Virology · doi:10.1016/0042-6822(91)91010-e · Cited by 126
Self-citationBruford, E. A., Riise, R., Teague, P., Porter, K., Thomson, K. L., Moore, A. T., Jay, M., Warburg, M., Schinzel, A., Tommerup, N., et al. (1997) · Genomics · doi:10.1006/geno.1997.4613 · Cited by 125
Molecular genetic markers spanning mouse chromosome 10
Kozak, C. A., Peyser, M., Krall, M., Mariano, T. M., Kumar, C. S., Pestka, S., & Mock, B. A. (1990) · Genomics · doi:10.1016/0888-7543(90)90039-w · Cited by 119
Self-citationMutations in the PDE6B Gene in Autosomal Recessive Retinitis Pigmentosa
Danciger, M., BLANEY, J., GAO, Y. Q., Zhao, D., Heckenlively, J. R., Jacobson, S. G., & Farber, D. B. (1995) · Genomics · doi:10.1006/geno.1995.0001 · Cited by 119
Self-citationTaylor, B. A., Navin, A., & Phillips, S. J. (1994) · Genomics · doi:10.1006/geno.1994.1323 · Cited by 90
The mouse X-linked juvenile retinoschisis cDNA: expression in photoreceptors.
Reid, S. N., Akhmedov, N. B., Piriev, N. I., Kozak, C., Danciger, M., & Farber, D. B. (1999) · Gene · doi:10.1016/s0378-1119(98)00578-2 · Cited by 76
Self-citationIsolation of a candidate cDNA for the gene causing retinal degeneration in the rd mouse.
Rickman, C. B., Danciger, M., Kozak, C. A., & Farber, D. B. (1989) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.86.24.9722 · Cited by 71
Self-citationBayés, M., Giordano, M., Balcells, S., Grinberg, D., Vilageliu, L., Martinez, I., Ayuso, C., Benitez, J. J., Ramos-Arroyo, M. A., Chivelet, P., et al. (1995) · Human Mutation · doi:10.1002/humu.1380050307 · Cited by 70
Screening for mouse retinal degenerations
Heckenlively, J. R., Winston, J. V., & Roderick, T. H. (1989) · Documenta Ophthalmologica · doi:10.1007/bf00170972 · Cited by 32
Self-citationHughes, D. J., Hill, A. J. M., Maçek, M., Redmond, A. O. B., Nevin, N. C., & Graham, C. A. (1996) · Human Mutation · doi:10.1002/(sici)1098-1004(1996)8:4 · Cited by 26
Mitchell, S. J., McHale, D. P., Campbell, D. A., Lench, N., Mueller, R. F., Bundey, S., & MARKHAM, A. F. (1998) · The American Journal of Human Genetics · doi:10.1086/301821 · Cited by 16
Flagged first, then by citations
1 of the 30 references couldn’t be matched to a known paper.
Research works printed but not linked: 3
- NL Hawes, RS Smith, B Chang, M Davisson, JR Heckenlively, SW John Mol Vis 5, 22 (1999).
- S N Reid, N B Akhmedov, N I Piriev, C A Kozak, M Danciger, D B Farber Gene 18, 227, , 257–266. (1999).
- S Gerber, L Santos, L Lopez, O Gribouval, F Ferraz, J Kaplan Invest Ophthalmol Visual Sci 40, S604 (1999).
Cited by
Sorted by citations
Anatomical profiling of nuclear receptor expression reveals a hierarchical transcriptional network
Bookout, A. L., Jeong, Y., Downes, M., Yu, R. T., Evans, R. M., & Mangelsdorf, D. J. (2006) · Cell · doi:10.1016/j.cell.2006.06.049 · Cited by 1,015
Nrl is required for rod photoreceptor development
Mears, A. J., Kondo, M., Swain, P. K., Takada, Y., Bush, R. A., Saunders, T. L., Sieving, P. A., & Swaroop, A. (2001) · Nature Genetics · doi:10.1038/ng774 · Cited by 912
Retinal degeneration mutants in the mouse
Chang, B., Hawes, N. L., Hurd, R. E., Davisson, M. T., Nusinowitz, S., & Heckenlively, J. R. (2002) · Vision Research · doi:10.1016/s0042-6989(01)00146-8 · Cited by 840
Self-citationA thyroid hormone receptor that is required for the development of green cone photoreceptors
Ng, L., Hurley, J. B., Dierks, B. D., Srinivas, M., Saltó, C., Vennström, B., Reh, T. A., & Forrest, D. (2001) · Nature Genetics · doi:10.1038/83829 · Cited by 576
Transcriptional regulation of photoreceptor development and homeostasis in the mammalian retina
Swaroop, A., Kim, D., & Forrest, D. (2010) · Nature Reviews Neuroscience · doi:10.1038/nrn2880 · Cited by 560
Metadata
- Authors
- Akhmedov, N. B., Piriev, N. I., Chang, B., Rapoport, A. L., Hawes, N. L., Nishina, P. M., Nusinowitz, S., Heckenlively, J. R., Roderick, T. H., Kozak, C. A., Danciger, M., Davisson, M. T., & Farber, D. B.
- Affiliations
- University of California, Los Angeles (US)
- Jules Stein Eye Institute, University of California School of Medicine, Los Angeles, CA 90095-7000; The Jackson Laboratory, 600 Main Street, Bar Harbor, ME 04609-1500; National Institute of Allergy and Infectious Diseases, Bethesda, MD 20892; Department of Biology, Loyola Marymount University, Los Angeles, CA 90045; and Molecular Biology Institute, University of California, Los Angeles, CA 90095
- Corresponding author
- Farber, Debora B.
- Venue
- Proceedings of the National Academy of Sciences
- Publisher
- National Academy of Sciences
- Published
- 2000-05-09
- Volume
- 97
- Issue
- 10
- Pages
- 5551-5556
- ISSN
- 0027-8424 (ISSN-L)
- 1091-6490
- PMC
- PMC25866
- OpenAlex
- W2127724565
- Cited by
- 221
- References
- 30
- Citations by year
- 2026: 6 · 2025: 5 · 2024: 4 · 2023: 6 · 2022: 1 · 2021: 7 · 2020: 6 · 2019: 3 · 2018: 6 · 2017: 14 · 2016: 2 · 2015: 9 · 2014: 5 · 2013: 7 · 2012: 9
- FWCI
- 3.14
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Proceedings of the National Academy of Sciences (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- The Mouseion at the JAXlibrary (Jackson Laboratory) (submittedVersion)
- Funders
- Research to Prevent Blindness
- National Institutes of Health
- National Eye Institute (R01EY008285, R01EY007758, EY 11996, EY07758, R01EY011996, EY08285)
- Topics
- Health Sciences › Medicine › Ophthalmology › Retinal Development and Disorders
- Health Sciences › Medicine › Ophthalmology › Retinal Diseases and Treatments
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Retinoids in leukemia and cellular processes
- Keywords
- inherited retinal degeneration, photoreceptors, nuclear receptors, nonsense mutation, frame shift, DNA-binding domain, nonsense-mediated mRNA decay, photoreceptor development, retinal dysplasia, mouse chromosome 9
- MeSH terms
- Amino Acid Sequence, Animals, Base Sequence, Chromosome Mapping, Electroretinography, Genetic Markers, Humans, Mice, Inbred C57BL, Mice, Inbred Strains, Mice, Mutant Strains, Molecular Sequence Data, Retinal Degeneration, RNA, Messenger, Transcription Factors, Sequence Deletion, DNA Primers, Receptors, Cytoplasmic and Nuclear, Codon, Terminator, Reverse Transcriptase Polymerase Chain Reaction, Photoreceptor Cells, Vertebrate, Mice, Orphan Nuclear Receptors
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review