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Kruppel-like Transcription Factor 6 Regulates Inflammatory Macrophage Polarization
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“To achieve a larger model size without introducing model parallelism, ZeRO-DP stage two 64 and checkpointing technique 65 were experimentally verified reducing model state memory and residual state memory in our environment settings without expanding training time too much while introducing extra communication and computational costs.”
From Large-scale foundation model on single-cell transcriptomics (2024) · cites this paper as [64]
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Citations
Cites
Macrophage plasticity and polarization: in vivo veritas
Sica, A., & Mantovani, A. (2012) · Journal of Clinical Investigation · doi:10.1172/jci59643 · Cited by 6,335
Protective and pathogenic functions of macrophage subsets
Murray, P. J., & Wynn, T. A. (2011) · Nature Reviews Immunology · doi:10.1038/nri3073 · Cited by 5,269
Transcriptional regulation of macrophage polarization: enabling diversity with identity
Lawrence, T., & Natoli, G. (2011) · Nature Reviews Immunology · doi:10.1038/nri3088 · Cited by 2,284
Research works printed but not linked: 23
- Olefsky, 2010, Macrophages, inflammation, and insulin resistance, Annu. Rev. Physiol., 72, 219, 10.1146/annurev-physiol-021909-135846 · DOI · Paper page
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- Szanto, 2010, STAT6 transcription factor is a facilitator of the nuclear receptor PPARγ-regulated gene expression in macrophages and dendritic cells, Immunity., 33, 699, 10.1016/j.immuni.2010.11.009 · DOI
- Andreoli, 2010, Biology of Kruppel-like factor 6 transcriptional regulator in cell life and death, IUBMB Life., 62, 896, 10.1002/iub.396 · DOI
- Mahabeleshwar, 2011, The myeloid transcription factor KLF2 regulates the host response to polymicrobial infection and endotoxic shock, Immunity., 34, 715, 10.1016/j.immuni.2011.04.014 · DOI
- Liao, 2011, Kruppel-like factor 4 regulates macrophage polarization, J. Clin. Invest., 121, 2736, 10.1172/JCI45444 · DOI · Paper page
- Davis, 2013, Isolation, culture, and functional evaluation of bone marrow-derived macrophages, Methods Mol. Biol., 1031, 27, 10.1007/978-1-62703-481-4_3 · DOI
- Leow, 2009, Prostate-specific Klf6 inactivation impairs anterior prostate branching morphogenesis through increased activation of the Shh pathway, J. Biol. Chem., 284, 21057, 10.1074/jbc.M109.001776 · DOI
- Nayak, 2013, Kruppel-like factor 2 is a transcriptional regulator of chronic and acute inflammation, Am. J. Pathol., 182, 1696, 10.1016/j.ajpath.2013.01.029 · DOI
- Cao, 2010, Role of Kruppel-like factors in leukocyte development, function, and disease, Blood., 116, 4404, 10.1182/blood-2010-05-285353 · DOI
- Matsumoto, 2006, Developmental regulation of yolk sac hematopoiesis by Kruppel-like factor 6, Blood., 107, 1357, 10.1182/blood-2005-05-1916 · DOI
- Lawrence, 2005, IKKα limits macrophage NF-κB activation and contributes to the resolution of inflammation, Nature., 434, 1138, 10.1038/nature03491 · DOI
- McConnell, 2010, Mammalian Kruppel-like factors in health and diseases, Physiol. Rev., 90, 1337, 10.1152/physrev.00058.2009 · DOI
- Ye, 2003, Hematopoietic stem cells expressing the myeloid lysozyme gene retain long-term, multilineage repopulation potential, Immunity., 19, 689, 10.1016/S1074-7613(03)00299-1 · DOI
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Cited by
Sorted by citations
Macrophage activation and polarization: nomenclature and experimental guidelines
Murray, P. J., Allen, J. E., Biswas, S. K., Fisher, E. A., Gilroy, D. W., Goerdt, S., Gordon, S., Hamilton, J. A., Ivashkiv, L. B., Lawrence, T., et al. (2014) · Immunity · doi:10.1016/j.immuni.2014.06.008 · Cited by 6,337
Macrophage phenotypes in atherosclerosis
Colin, S., Chinetti‐Gbaguidi, G., & Staels, B. (2014) · Immunological Reviews · doi:10.1111/imr.12218 · Cited by 657
Mechanically activated ion channel Piezo1 modulates macrophage polarization and stiffness sensing
Atcha, H., Jairaman, A., Holt, J. R., Meli, V. S., Nagalla, R. R., Veerasubramanian, P. K., Brumm, K. T., Lim, H. E., Othy, S., Cahalan, M. D., et al. (2021) · Nature Communications · doi:10.1038/s41467-021-23482-5 · Cited by 644
Large-scale foundation model on single-cell transcriptomics
Hao, M., Gong, J., Zeng, X., Liu, C., Guo, Y., Cheng, X., Wang, T., Ma, J., Zhang, X., & Song, L. (2024) · Nature Methods · doi:10.1038/s41592-024-02305-7 · Cited by 628
Macrophage phenotype in response to ECM bioscaffolds
Huleihel, L., Dziki, J. L., Bartolacci, J. G., Rausch, T., Scarritt, M. E., Cramer, M. C., Vorobyov, T., LoPresti, S. T., Swineheart, I. T., White, L. J., et al. (2017) · Seminars in Immunology · doi:10.1016/j.smim.2017.04.004 · Cited by 169
Metadata
- Authors
- Date, D., Das, R., Narla, G., Simon, D. I., Jain, M. K., & Mahabeleshwar, G. H.
- Venue
- Journal of Biological Chemistry
- Publisher
- Elsevier BV
- Published
- 2014-04
- Volume
- 289
- Issue
- 15
- Pages
- 10318-10329
- ISSN
- 0021-9258
- Cited by
- 156
- References
- 3
- Language
- en
- Licence
- Funders
- National Institutes of Health (HL097023, HL57506, HL72952, HL75427, HL76754, HL086548)
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