Proteomic Analysis of Rat Liver Peroxisome

Mass Spectrometric Sequencing of Proteins from Silver-Stained Polyacrylamide Gels

Shevchenko, A., Wilm, M. S., Vorm, O., & Mann, M. (1996) · Analytical Chemistry · doi:10.1021/ac950914h · Cited by 8,930 · see citing works

Large-scale analysis of the yeast proteome by multidimensional protein identification technology

Washburn, M. P., Wolters, D. A., & Yates, J. R. (2001) · Nature Biotechnology · doi:10.1038/85686 · Cited by 4,759 · see citing works

Quantitative analysis of complex protein mixtures using isotope-coded affinity tags

Gygi, S. P., Rist, B., Gerber, S. A., Turecek, F., Gelb, M. H., & Aebersold, R. (1999) · Nature Biotechnology · doi:10.1038/13690 · Cited by 4,683 · see citing works

Proteomics to study genes and genomes

Pandey, A., & Mann, M. (2000) · Nature · doi:10.1038/35015709 · Cited by 2,373 · see citing works

Linking genome and proteome by mass spectrometry: Large-scale identification of yeast proteins from two dimensional gels

Shevchenko, A., Jensen, O. N., Podtelejnikov, A. V., Sagliocco, F. A., Wilm, M. S., Vorm, O., Mortensen, P. M., Shevchenko, A., Boucherie, H., & Mann, M. (1996) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.93.25.14440 · Cited by 1,429 · see citing works

A fatty acyl-CoA oxidizing system in rat liver peroxisomes; enhancement by clofibrate, a hypolipidemic drug.

Lazarow, P. B., & de Duve, C. (1976) · Proceedings of the National Academy of Sciences of the United States of America · doi:10.1073/pnas.73.6.2043 · Cited by 1,044 · see citing works

Directed Proteomic Analysis of the Human Nucleolus

Andersen, J., Lyon, C. E., Fox, A. H., Leung, A. K. L., Lam, Y. W., Steen, H., Mann, M., & Lamond, A. I. (2002) · Current Biology · doi:10.1016/s0960-9822(01)00650-9 · Cited by 1,024 · see citing works

Dnm1p Gtpase-Mediated Mitochondrial Fission Is a Multi-Step Process Requiring the Novel Integral Membrane Component Fis1p

Mozdy, A. D., McCaffery, J. M., & Shaw, J. M. (2000) · The Journal of Cell Biology · doi:10.1083/jcb.151.2.367 · Cited by 725 · see citing works

The application of mass spectrometry to membrane proteomics

Wu, C. C., & Yates, J. R. (2003) · Nature Biotechnology · doi:10.1038/nbt0303-262 · Cited by 558 · see citing works

The mechanism and functions of ATP‐dependent proteases in bacterial and animal cells

Goldberg, A. L. (1992) · European Journal of Biochemistry · doi:10.1111/j.1432-1033.1992.tb19822.x · Cited by 454 · see citing works

A Human Gene Responsible for Zellweger Syndrome That Affects Peroxisome Assembly

Shimozawa, N., Tsukamoto, T., Suzuki, Y., Orii, T., Shirayoshi, Y., Mori, T., & Fujiki, Y. (1992) · Science · doi:10.1126/science.1546315 · Cited by 361 · see citing works

Requirement for the Yeast Gene LON in Intramitochondrial Proteolysis and Maintenance of Respiration

Suzuki, C. K., Suda, K., Wang, N., & Schatz, G. (1994) · Science · doi:10.1126/science.8146662 · Cited by 272 · see citing works

Phosphorylation sites of protein kinase C δ in H2O2-treated cells and its activation by tyrosine kinase in vitro

Konishi, H., Yamauchi, E., Taniguchi, H., Yamamoto, T., Matsuzaki, H., Takemura, Y., Ohmae, K., Kikkawa, U., & Nishizuka, Y. (2001) · Proceedings of the National Academy of Sciences of the United States of America · doi:10.1073/pnas.111158798 · Cited by 269 · see citing works

Proteomics Characterization of Abundant Golgi Membrane Proteins

Bell, A. W., Ward, M. A., Blackstock, W. P., Freeman, H. N., Choudhary, J. S., Lewis, A. P., Chotai, D., Fazel, A., Gushue, J. N., Paiement, J. M., et al. (2001) · Journal of Biological Chemistry · doi:10.1074/jbc.m006143200 · Cited by 244 · see citing works

PIM1 encodes a mitochondrial ATP-dependent protease that is required for mitochondrial function in the yeast Saccharomyces cerevisiae.

van Dyck, L., Pearce, D. A., & Sherman, F. (1994) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(17)42340-4 · Cited by 233 · see citing works

Chloroplast and Mitochondrial Proteases in Arabidopsis. A Proposed Nomenclature

Adam, Z., Adamska, I., Nakabayashi, K., Ostersetzer, O., Haußühl, K., Manuell, A. L., Zheng, B., Vallon, O., Rodermel, S. R., Shinozaki, K., et al. (2001) · PLANT PHYSIOLOGY · doi:10.1104/pp.125.4.1912 · Cited by 216 · see citing works

A human mitochondrial ATP-dependent protease that is highly homologous to bacterial Lon protease.

Wang, N., Gottesman, S., Willingham, M. C., Gottesman, M. M., & Maurizi, M. R. (1993) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.90.23.11247 · Cited by 186 · see citing works

[25] ATP-dependent protease La (Lon) from Escherichia coli

Goldberg, A. L., Moerschell, R. P., Hachung, C., & Maurizi, M. R. (1994) · Methods in enzymology on CD-ROM/Methods in enzymology · doi:10.1016/0076-6879(94)44027-1 · Cited by 178 · see citing works

Insertion of the 70-kDa Peroxisomal Membrane Protein into Peroxisomal Membranes in Vivo and in Vitro

Imanaka, T., Shiina, Y., Takano, T., Hashimoto, T., & Osumi, T. (1996) · Journal of Biological Chemistry · doi:10.1074/jbc.271.7.3706 · Cited by 123 · see citing works

Mass spectrometry compatibility of two-dimensional gel protein stains

Lauber, W. M., Carroll, J. A., Dufield, D. R., Kiesel, J. R., Radabaugh, M. R., & Malone, J. P. (2001) · Electrophoresis · doi:10.1002/1522-2683()22:5 · Cited by 119 · see citing works

A Cytoplasmic Male Sterility–Associated Mitochondrial Peptide in Common Bean Is Post-Translationally Regulated

Sarria, R., Lyznik, A., Vallejos, C. E., & Mackenzie, S. A. (1998) · The Plant Cell · doi:10.1105/tpc.10.7.1217 · Cited by 113 · see citing works

d-3-Hydroxyacyl-CoA Dehydratase/d-3-Hydroxyacyl-CoA Dehydrogenase Bifunctional Protein Deficiency: A Newly Identified Peroxisomal Disorder

Suzuki, Y., Jiang, L., Souri, M., Miyazawa, S., Fukuda, S., Zhang, Z., Une, M., Shimozawa, N., Kondo, N., Orii, T., et al. (1997) · The American Journal of Human Genetics · doi:10.1086/301599 · Cited by 107 · see citing works

The Gene Encoding the Acyl-CoA-binding Protein Is Activated by Peroxisome Proliferator-activated Receptor γ through an Intronic Response Element Functionally Conserved between Humans and Rodents

Helledie, T., Grøntved, L., Jensen, S. S., Kiilerich, P., RIETVELD, L. E. G., Albrektsen, T., Sandberg, M. B., Nøhr, J., Larsen, L. K., Fleckner, J., et al. (2002) · Journal of Biological Chemistry · doi:10.1074/jbc.m111295200 · Cited by 99 · see citing works

The human proteomics initiative (HPI)

O’Donovan, C., Apweiler, R., & Bairoch, A. (2001) · Trends in biotechnology · doi:10.1016/s0167-7799(01)01598-0 · Cited by 86 · see citing works

Analytical study of microsomes and isolated subcellular membranes from rat liver. V. Immunological localization of cytochrome b5 by electron microscopy: methodology and application to various subcellular fractions.

Fowler, S., Remacle, J., Trouet, A., Beaufay, H., Berthet, J., Wibo, M., & Hauser, P. (1976) · The Journal of Cell Biology · doi:10.1083/jcb.71.2.535 · Cited by 63 · see citing works

Molecular cloning, sequencing, and expression of cDNA for rat liver microsomal aldehyde dehydrogenase.

Miyauchi, K., Masaki, R., Taketani, S., Yamamoto, A., Akayama, M., & Tashiro, Y. (1991) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(18)55028-6 · Cited by 62 · see citing works

Localization of Cytosolic NADP-dependent Isocitrate Dehydrogenase in the Peroxisomes of Rat Liver Cells

Yoshihara, T., Hamamoto, T., Munakata, R., Tajiri, R., Ohsumi, M., & Yokota, S. (2001) · Journal of Histochemistry & Cytochemistry · doi:10.1177/002215540104900906 · Cited by 58 · see citing works

Identification of a Type 1 Peroxisomal Targeting Signal in a Viral Protein and Demonstration of Its Targeting to the Organelle

Mohan, K. V. K., Som, I., & Atreya, C. D. (2002) · Journal of Virology · doi:10.1128/jvi.76.5.2543-2547.2002 · Cited by 51 · see citing works

A mass spectrometric study on the in vivo posttranslational modification of GAP-43.

Taniguchi, H., Suzuki, M., Manenti, S., & Titani, K. (1994) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(17)31670-8 · Cited by 50 · see citing works

Regulators of membrane trafficking andMycobacterium tuberculosis phagosome maturation block

Fratti, R. A., Vergne, I., Chua, J., Skidmore, J. M., & Deretic, V. P. (2000) · Electrophoresis · doi:10.1002/1522-2683(20001001)21:16 · Cited by 43 · see citing works

Maize contains a Lon protease gene that can partially complement a yeast pim1-deletion mutant

Barakat, S., Pearce, D. A., Sherman, F., & Rapp, W. D. (1998) · Plant Molecular Biology · doi:10.1023/a:1005912831051 · Cited by 37 · see citing works

Genetic heterogeneity of peroxisome biogenesis disorders among Japanese patients: Evidence for a founder haplotype for the most common PEX10 gene mutation

Shimozawa, N., Nagase, T., Takemoto, Y., Ohura, T., Suzuki, Y., & Kondo, N. (2003) · American Journal of Medical Genetics Part A · doi:10.1002/ajmg.a.20030 · Cited by 34 · see citing works

Purification and Characterization of MAR1

Alfonzo, J. D., Thiemann, O. H., & Simpson, L. (1998) · Journal of Biological Chemistry · doi:10.1074/jbc.273.45.30003 · Cited by 22 · see citing works

A novel 57 kDa peroxisomal membrane polypeptide detected by monoclonal antibody (PXM1a/207B)

Imanaka, T., Lazarow, P. B., & Takano, T. (1991) · Biochimica et Biophysica Acta (BBA) - Biomembranes · doi:10.1016/0005-2736(91)90401-s · Cited by 21 · see citing works

MOLECULAR AND EVOLUTIONARY BASIS OF THE CELLULAR STRESS RESPONSE

Kültz, D. (2004) · Annual Review of Physiology · doi:10.1146/annurev.physiol.67.040403.103635 · Cited by 1,502 · see citing works

Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae

Galagan, J. E., Calvo, S. E., Cuomo, C. A., Ma, L., Wortman, J. R., Batzoglou, S., Lee, S., Baştürkmen, M., Spevak, C. C., Clutterbuck, J., et al. (2005) · Nature · doi:10.1038/nature04341 · Cited by 1,359 · see citing works

Role of peroxisomes in ros/rns-metabolism: Implications for human disease

Fransen, M., Nordgren, M., Wang, B., & Apanasets, O. (2012) · Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease · doi:10.1016/j.bbadis.2011.12.001 · Cited by 644 · see citing works

PGC7/Stella protects against DNA demethylation in early embryogenesis

Nakamura, T., Arai, Y., Umehara, H., Masuhara, M., Kimura, T., Taniguchi, H., Sekimoto, T., Ikawa, M., Yoneda, Y., Okabe, M., et al. (2006) · Nature Cell Biology · doi:10.1038/ncb1519 · Cited by 580 · see citing works

Contribution of the Endoplasmic Reticulum to Peroxisome Formation

Hoepfner, D., Schildknegt, D., Braakman, I., Philippsen, P., & Tabak, H. F. (2005) · Cell · doi:10.1016/j.cell.2005.04.025 · Cited by 463 · see citing works

Rab18 localizes to lipid droplets and induces their close apposition to the endoplasmic reticulum-derived membrane

Ozeki, S., Cheng, J., Tauchi-Sato, K., Hatano, N., Taniguchi, H., & Fujimoto, T. (2005) · Journal of Cell Science · doi:10.1242/jcs.02401 · Cited by 369 · see citing works

Proteome Analysis ofArabidopsisLeaf Peroxisomes Reveals Novel Targeting Peptides, Metabolic Pathways, and Defense Mechanisms

Reumann, S., Babujee, L., Ma, C., Wienkoop, S., Siemsen, T., Antonicelli, G. E., Rasche, N., Lueder, F., Weckwerth, W., & Jahn, O. (2007) · The Plant Cell · doi:10.1105/tpc.107.050989 · Cited by 352 · see citing works

Biochemistry and genetics of inherited disorders of peroxisomal fatty acid metabolism

Veldhoven, P. P. V. (2010) · Journal of Lipid Research · doi:10.1194/jlr.r005959 · Cited by 328 · see citing works

Mitochondrial morphology transitions and functions: implications for retrograde signaling?

Picard, M. A., Shirihai, O. S., Gentil, B. J., & Burelle, Y. (2013) · American Journal of Physiology-Regulatory, Integrative and Comparative Physiology · doi:10.1152/ajpregu.00584.2012 · Cited by 320 · see citing works

The peroxisome: an update on mysteries

Islinger, M., Grille, S., Fahimi, H. D., & Schrader, M. (2012) · Histochemistry and Cell Biology · doi:10.1007/s00418-012-0941-4 · Cited by 279 · see citing works

The Impact of Peroxisomes on Cellular Aging and Death

Manivannan, S., Scheckhuber, C. Q., Marten Veenhuis, A., & van der Klei, I. J. (2012) · Frontiers in Oncology · doi:10.3389/fonc.2012.00050 · Cited by 273 · see citing works

In-Depth Proteome Analysis of Arabidopsis Leaf Peroxisomes Combined with in Vivo Subcellular Targeting Verification Indicates Novel Metabolic and Regulatory Functions of Peroxisomes

Reumann, S., Quan, S., Aung, K., Yang, P., Manandhar-Shrestha, K., Holbrook, D., Linka, N., Switzenberg, R., Wilkerson, C. G., Weber, A. P. M., et al. (2009) · PLANT PHYSIOLOGY · doi:10.1104/pp.109.137703 · Cited by 262 · see citing works

Mutations in ABCD4 cause a new inborn error of vitamin B12 metabolism

Coelho, D., Kim, J. C., Miousse, I. R., Fung, S., du Moulin, M., Buers, I., Suormala, T., Burda, P., Frapolli, M., Stucki, M., et al. (2012) · Nature Genetics · doi:10.1038/ng.2386 · Cited by 231 · see citing works

Proteomics characterization of mouse kidney peroxisomes by tandem mass spectrometry and protein correlation profiling

Wiese, S., Gronemeyer, T., Ofman, R., Kunze, M., Grou, C. P., Almeida, J. A., Eisenacher, M., Stephan, C., Hayen, H., Schollenberger, L., et al. (2007) · Molecular & Cellular Proteomics · doi:10.1074/mcp.m700169-mcp200 · Cited by 231 · see citing works

AraPerox. A Database of Putative Arabidopsis Proteins from Plant Peroxisomes

Reumann, S., Ma, C., Lemke, S., & Babujee, L. (2004) · PLANT PHYSIOLOGY · doi:10.1104/pp.104.043695 · Cited by 229 · see citing works

Peroxisomes Are Oxidative Organelles

Antonenkov, V. D., Grunau, S., Ohlmeier, S., & Hiltunen, J. K. (2009) · Antioxidants and Redox Signaling · doi:10.1089/ars.2009.2996 · Cited by 223 · see citing works

Zooming in: Fractionation strategies in proteomics

Stasyk, T., & Huber, L. A. (2004) · PROTEOMICS · doi:10.1002/pmic.200401048 · Cited by 216 · see citing works

Highly Oxidized Peroxisomes Are Selectively Degraded via Autophagy in Arabidopsis

Shibata, M., Oikawa, K., Yoshimoto, K., Kondo, M., Mano, S., Yamada, K., Hayashi, M., Sakamoto, W., Ohsumi, Y., & Nishimura, M. (2013) · The Plant Cell · doi:10.1105/tpc.113.116947 · Cited by 208 · see citing works

Lipidomics era: Accomplishments and challenges

Khalil, M. B., Hou, W., Zhou, H., Elisma, F., Swayne, L. A., Blanchard, A. P., Yao, Z., Bennett, S. A. L., & Figeys, D. (2010) · Mass Spectrometry Reviews · doi:10.1002/mas.20294 · Cited by 205 · see citing works

The emerging role of acyl-CoA thioesterases and acyltransferases in regulating peroxisomal lipid metabolism

Hunt, M. C., Siponen, M. I., & Alexson, S. E. H. (2012) · Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease · doi:10.1016/j.bbadis.2012.03.009 · Cited by 196 · see citing works

The peroxisome: still a mysterious organelle

Schrader, M., & Fahimi, H. D. (2008) · Histochemistry and Cell Biology · doi:10.1007/s00418-008-0396-9 · Cited by 192 · see citing works

Nanobody Technology: A Versatile Toolkit for Microscopic Imaging, Protein–Protein Interaction Analysis, and Protein Function Exploration

Beghein, E., & Gettemans, J. (2017) · Frontiers in Immunology · doi:10.3389/fimmu.2017.00771 · Cited by 190 · see citing works

Peroxisomal matrix protein import: the transient pore model

Erdmann, R., & Schliebs, W. (2005) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm1710 · Cited by 190 · see citing works

Peroxisome diversity and evolution

Gabaldón, T. (2010) · Philosophical Transactions of the Royal Society B Biological Sciences · doi:10.1098/rstb.2009.0240 · Cited by 183 · see citing works

Gene and Protein Characterization of the Human Glutathione S-Transferase Kappa and Evidence for a Peroxisomal Localization

Morel, F., Rauch, C., Petit, E., Piton, A., Théret, N., Coles, B., & Guillouzo, A. (2004) · Journal of Biological Chemistry · doi:10.1074/jbc.m313357200 · Cited by 179 · see citing works

Novel Proteins, Putative Membrane Transporters, and an Integrated Metabolic Network Are Revealed by Quantitative Proteomic Analysis of Arabidopsis Cell Culture Peroxisomes

Eubel, H., Meyer, E. H., Taylor, N. L., Bussell, J. D., O’Toole, N., Heazlewood, J. L., Castleden, I. R., Small, I., Smith, S. M., & Millar, A. H. (2008) · PLANT PHYSIOLOGY · doi:10.1104/pp.108.129999 · Cited by 178 · see citing works

Origin and evolution of the peroxisomal proteome

Gabaldón, T., Snel, ‎., van Zimmeren, F., Hemrika, W., Tabak, H. F., & Huynen, M. A. (2006) · Biology Direct · doi:10.1186/1745-6150-1-8 · Cited by 176 · see citing works

Ubiquitination of Mammalian Pex5p, the Peroxisomal Import Receptor

Carvalho, A. F., Pinto, M. P., Grou, C. P. O., Alencastre, I. S., Fransen, M., Sá-Miranda, C., & Azevedo, J. E. (2007) · Journal of Biological Chemistry · doi:10.1074/jbc.m706325200 · Cited by 174 · see citing works

Proteomic responses to environmentally induced oxidative stress

Tomanek, L. (2015) · Journal of Experimental Biology · doi:10.1242/jeb.116475 · Cited by 173 · see citing works

Protease gene families in Populus and Arabidopsis

García-Lorenzo, M., Sjödin, A., Jansson, S., & Funk, C. (2006) · BMC Plant Biology · doi:10.1186/1471-2229-6-30 · Cited by 166 · see citing works

Lipidomics: Practical aspects and applications

Wolf, C., & Quinn, P. J. (2007) · Progress in Lipid Research · doi:10.1016/j.plipres.2007.09.001 · Cited by 148 · see citing works

Abiotic environmental stress induced changes in the Arabidopsis thaliana chloroplast, mitochondria and peroxisome proteomes

Taylor, N. L., Tan, Y., Jacoby, R. P., & Millar, A. H. (2008) · Journal of Proteomics · doi:10.1016/j.jprot.2008.11.006 · Cited by 147 · see citing works

Transfer of metabolites across the peroxisomal membrane.

Antonenkov, V. D., & Hiltunen, J. (2012) · Biochimica et Biophysica Acta · doi:10.1016/j.bbadis.2011.12.011 · Cited by 152 · see citing works

Redox Regulation of Homeostasis and Proteostasis in Peroxisomes

Walker, C. L., Pomatto, L. C. D., Tripathi, D. N., & Davies, K. J. A. (2017) · Physiological Reviews · doi:10.1152/physrev.00033.2016 · Cited by 145 · see citing works

Comparative proteomics of glycosomes from bloodstream form and procyclic culture form Trypanosoma brucei brucei

Colasante, C., Ellis, M., Ruppert, T., & Voncken, F. G. J. (2006) · PROTEOMICS · doi:10.1002/pmic.200500668 · Cited by 142 · see citing works

Peroxisomal acyl-CoA synthetases

Watkins, P. A., & Ellis, J. M. (2012) · Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease · doi:10.1016/j.bbadis.2012.02.010 · Cited by 145 · see citing works

Presence of bone marrow micrometastasis is associated with different recurrence risk within molecular subtypes of breast cancer

Naume, B., Zhao, X., Synnestvedt, M., Borgen, E., Russnes, H. G., Lingjærde, O. C., Strømberg, M., Wiedswang, G., Kvalheim, G., Kåresen, R., et al. (2007) · Molecular Oncology · doi:10.1016/j.molonc.2007.03.004 · Cited by 143 · see citing works

N-Acetylglucosaminyltransferase III Antagonizes the Effect of N-Acetylglucosaminyltransferase V on α3β1 Integrin-mediated Cell Migration

Zhao, Y., Nakagawa, T., Itoh, S., Inamori, K., Isaji, T., Kariya, Y., Kondo, A., Miyoshi, E., Miyazaki, K., Kawasaki, N., et al. (2006) · Journal of Biological Chemistry · doi:10.1074/jbc.m607274200 · Cited by 142 · see citing works

α‐Tomatine, the major saponin in tomato, induces programmed cell death mediated by reactive oxygen species in the fungal pathogen Fusarium oxysporum

Ito, S., Ihara, T., Tamura, H., Tanaka, S., Ikeda, T., Kajihara, H., Dissanayake, C., Abdel-Motaal, F. F., & El-Sayed, M. (2007) · FEBS Letters · doi:10.1016/j.febslet.2007.06.010 · Cited by 142 · see citing works

Members of the E2D (UbcH5) Family Mediate the Ubiquitination of the Conserved Cysteine of Pex5p, the Peroxisomal Import Receptor

Grou, C. P. O., Carvalho, A. F., Pinto, M. P., Wiese, S., Piechura, H., Meyer, H. E., Warscheid, B., Sá-Miranda, C., & Azevedo, J. E. (2008) · Journal of Biological Chemistry · doi:10.1074/jbc.m800402200 · Cited by 140 · see citing works

Subcellular proteomics

Christopher, J. A., Stadler, C., Martin, C. E., Morgenstern, M., Pan, Y., Betsinger, C. N., Rattray, D., Mahdessian, D., Gingras, A., Warscheid, B., et al. (2021) · Nature Reviews Methods Primers · doi:10.1038/s43586-021-00029-y · Cited by 137 · see citing works

Deletion of Core Fucosylation on α3β1 Integrin Down-regulates Its Functions

Zhao, Y., Itoh, S., Wang, X., Isaji, T., Miyoshi, E., Kariya, Y., Miyazaki, K., Kawasaki, N., Taniguchi, N., & Gu, J. (2006) · Journal of Biological Chemistry · doi:10.1074/jbc.m608764200 · Cited by 136 · see citing works

Acyl-CoA Dehydrogenases: Dynamic History of Protein Family Evolution

Swigoňová, Z., Mohsen, A.-W. A., & Vockley, J. (2009) · Journal of Molecular Evolution · doi:10.1007/s00239-009-9263-0 · Cited by 126 · see citing works

Phosphoproteomics strategies for the functional analysis of signal transduction

Morandell, S., Stasyk, T., Grosstessner‐Hain, K., Roitinger, E., Mechtler, K., Bonn, G. K., & Huber, L. A. (2006) · PROTEOMICS · doi:10.1002/pmic.200600058 · Cited by 128 · see citing works

Subcellular fractionation methods and strategies for proteomics

Lee, Y. H., Tan, H. T., & Chung, M. C. M. (2010) · PROTEOMICS · doi:10.1002/pmic.201000289 · Cited by 125 · see citing works

Mammalian plasma membrane proteomics

Josić, D., & Clifton, J. G. (2007) · PROTEOMICS · doi:10.1002/pmic.200700139 · Cited by 125 · see citing works

Identification and Functional Characterization ofArabidopsisPEROXIN4 and the Interacting Protein PEROXIN22[W]

Zolman, B. K., Monroe-Augustus, M., Silva, I. D., & Bartel, B. (2005) · The Plant Cell · doi:10.1105/tpc.105.035691 · Cited by 125 · see citing works

Identification and characterization of new long chain Acyl-CoA dehydrogenases

He, M., Pei, Z., Mohsen, A.-W. A., Watkins, P. A., MURDOCH, G. H., Veldhoven, P. P. V., Ensenauer, R. E., & Vockley, J. E. (2010) · Molecular Genetics and Metabolism · doi:10.1016/j.ymgme.2010.12.005 · Cited by 124 · see citing works

Proteome Analysis of Pitcher Fluid of the Carnivorous Plant Nepenthes alata

Hatano, N., & Hamada, T. (2008) · Journal of Proteome Research · doi:10.1021/pr700566d · Cited by 123 · see citing works

Peroxisome Biogenesis and Function

Kaur, N., Reumann, S., & Hu, J. (2009) · The Arabidopsis Book · doi:10.1199/tab.0123 · Cited by 122 · see citing works

Rat Liver Peroxisomes after Fibrate Treatment

Islinger, M., Luöers, G. H., Li, K. W., Loos, M., & Völkl, A. (2007) · Journal of Biological Chemistry · doi:10.1074/jbc.m610910200 · Cited by 121 · see citing works

Disrupting Autophagy Restores Peroxisome Function to anArabidopsis lon2Mutant and Reveals a Role for the LON2 Protease in Peroxisomal Matrix Protein Degradation

Farmer, L. M., Rinaldi, M. A., Young, P. G., Danan, C. H., Burkhart, S. E., & Bartel, B. (2013) · The Plant Cell · doi:10.1105/tpc.113.113407 · Cited by 120 · see citing works

ACBD5 deficiency causes a defect in peroxisomal very long-chain fatty acid metabolism

Ferdinandusse, S., Falkenberg, K. D., Koster, J., Mooyer, P. A., Jones, R., van Roermund, C. W. T., Pizzino, A., Schrader, M., Wanders, R. J. A., Vanderver, A., et al. (2017) · Journal of Medical Genetics · doi:10.1136/jmedgenet-2016-104132 · Cited by 120 · see citing works

Functional mechanics of the ATP-dependent Lon protease- lessons from endogenous protein and synthetic peptide substrates

Lee, I., & Suzuki, C. K. (2008) · Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics · doi:10.1016/j.bbapap.2008.02.010 · Cited by 119 · see citing works

Mitochondrial Lon protease at the crossroads of oxidative stress, ageing and cancer

Pinti, M., Gibellini, L., Liu, Y., Xu, S., Lü, B., & Cossarizza, A. (2015) · Cellular and Molecular Life Sciences · doi:10.1007/s00018-015-2039-3 · Cited by 117 · see citing works

Be different—The diversity of peroxisomes in the animal kingdom

Islinger, M., Cardoso, M. J., & Schrader, M. (2010) · Biochimica et Biophysica Acta (BBA) - Molecular Cell Research · doi:10.1016/j.bbamcr.2010.03.013 · Cited by 115 · see citing works

Sample preparation and fractionation for proteome analysis and cancer biomarker discovery by mass spectrometry

Ahmed, F. E. (2009) · Journal of Separation Science · doi:10.1002/jssc.200800622 · Cited by 111 · see citing works

The Proteome of Human Liver Peroxisomes: Identification of Five New Peroxisomal Constituents by a Label-Free Quantitative Proteomics Survey

Gronemeyer, T., Wiese, S., Ofman, R., Bunse, C., Pawlas, M., Hayen, H., Eisenacher, M., Stephan, C., Meyer, H. E., Waterham, H. R., et al. (2013) · PLoS ONE · doi:10.1371/journal.pone.0057395 · Cited by 111 · see citing works

Alcohol oxidase: A complex peroxisomal, oligomeric flavoprotein

Ozimek, P. Z., Marten Veenhuis, A., & van der Klei, I. J. (2005) · FEMS Yeast Research · doi:10.1016/j.femsyr.2005.06.005 · Cited by 111 · see citing works

Membrane Association of the Cycling Peroxisome Import Receptor Pex5p

Kerssen, D., Hambruch, E., Klaas, W., Platta, H. W., KRUIJFF, B. D., Erdmann, R., Kunau, W., & Schliebs, W. (2006) · Journal of Biological Chemistry · doi:10.1074/jbc.m509257200 · Cited by 108 · see citing works

Plasmalogen homeostasis – regulation of plasmalogen biosynthesis and its physiological consequence in mammals

Honsho, M., & Fujiki, Y. (2017) · FEBS Letters · doi:10.1002/1873-3468.12743 · Cited by 106 · see citing works

Derlin-1 and UBXD8 are engaged in dislocation and degradation of lipidated ApoB-100 at lipid droplets

Suzuki, M., Otsuka, T., Ohsaki, Y., Cheng, J., Taniguchi, T., Hashimoto, H., Taniguchi, H., & Fujimoto, T. (2012) · Molecular Biology of the Cell · doi:10.1091/mbc.e11-11-0950 · Cited by 105 · see citing works

Proteome of plant peroxisomes: new perspectives on the role of these organelles in cell biology

Palma, J. M., Corpas, F. J., & del Río, L. A. (2009) · PROTEOMICS · doi:10.1002/pmic.200700732 · Cited by 105 · see citing works

Novel peroxisomal protease Tysnd1 processes PTS1‐ and PTS2‐containing enzymes involved in β‐oxidation of fatty acids

Kurochkin, I. V., Mizuno, Y., Konagaya, A., Sakaki, Y., Schönbach, C., & Okazaki, Y. (2007) · The EMBO Journal · doi:10.1038/sj.emboj.7601525 · Cited by 102 · see citing works

The glutathione transferase kappa family

Morel, F., & Aninat, C. (2011) · Drug Metabolism Reviews · doi:10.3109/03602532.2011.556122 · Cited by 100 · see citing works

Peroxisomal Atg37 binds Atg30 or palmitoyl-CoA to regulate phagophore formation during pexophagy

Nazarko, T. Y., Ozeki, K., Till, A., Ramakrishnan, G., Lotfi, P., Yan, M., & Subramani, S. (2014) · Journal of Cell Biology · doi:10.1083/jcb.201307050 · Cited by 99 · see citing works

A Peroxisomal Lon Protease and Peroxisome Degradation by Autophagy Play Key Roles in Vitality of<i>Hansenula polymorpha</i>Cells

Aksam, E. B., Koek, A., Jourdan, S., Veenhuis, M., & van der Klei, I. J. (2007) · Autophagy · doi:10.4161/auto.3534 · Cited by 95 · see citing works

Chromatin remodeller SMARCA4 recruits topoisomerase 1 and suppresses transcription-associated genomic instability

Husain, A., Begum, N. A., Taniguchi, T., Taniguchi, H., Kobayashi, M., & Honjo, T. (2016) · Nature Communications · doi:10.1038/ncomms10549 · Cited by 93 · see citing works

Glutathione and peroxisome redox homeostasis

Ferreira, M. J., Rodrigues, T. A., Pedrosa, A. G., Silva, A. R., Vilarinho, B. G., Francisco, T., & Azevedo, J. E. (2023) · Redox Biology · doi:10.1016/j.redox.2023.102917 · Cited by 94 · see citing works

Mammalian SOD2 is exclusively located in mitochondria and not present in peroxisomes

Karnati, S., Lüers, G. H., Pfreimer, S., & Baumgart‐Vogt, E. (2013) · Histochemistry and Cell Biology · doi:10.1007/s00418-013-1099-4 · Cited by 91 · see citing works

Role of Lon1 protease in post‐germinative growth and maintenance of mitochondrial function in Arabidopsis thaliana

Rigas, S., Δάρας, Γ., Laxa, M., Marathias, N., Fasseas, C., Sweetlove, L. J., & Hatzopoulos, P. (2008) · New Phytologist · doi:10.1111/j.1469-8137.2008.02701.x · Cited by 85 · see citing works

Deficiency of a Retinal Dystrophy Protein, Acyl-CoA Binding Domain-containing 5 (ACBD5), Impairs Peroxisomal β-Oxidation of Very-long-chain Fatty Acids

Yagita, Y., Shinohara, K., Abe, Y., Nakagawa, K., Al-Owain, M., Alkuraya, F. S., & Fujiki, Y. (2017) · Journal of Biological Chemistry · doi:10.1074/jbc.m116.760090 · Cited by 85 · see citing works

Arabidopsis LON2 Is Necessary for Peroxisomal Function and Sustained Matrix Protein Import

Lingard, M. J., & Bartel, B. (2009) · PLANT PHYSIOLOGY · doi:10.1104/pp.109.142505 · Cited by 84 · see citing works

Sub‐cellular localization of membrane proteins

Sadowski, P. G., Groen, A. J., Dupree, P., & Lilley, K. S. (2008) · PROTEOMICS · doi:10.1002/pmic.200800217 · Cited by 80 · see citing works

Use of magnetic beads with immobilized monoclonal antibodies for isolation of highly pure plasma membranes

Lawson, E. L., Clifton, J. G., Huang, F., Li, X., Hixson, D. C., & Josić, D. (2006) · Electrophoresis · doi:10.1002/elps.200600059 · Cited by 77 · see citing works

Organelle Proteomics of Rat Synaptic Proteins: Correlation-Profiling by Isotope-Coded Affinity Tagging in Conjunction with Liquid Chromatography-Tandem Mass Spectrometry to Reveal Post-synaptic Density Specific Proteins

Li, K. W., Hornshaw, M. P., van Minnen, J., Smalla, K., Gundelfinger, E. D., & Smit, A. B. (2005) · Journal of Proteome Research · doi:10.1021/pr049802+ · Cited by 76 · see citing works

A Comparative Proteomic Strategy for Subcellular Proteome Research

Jiang, X.-S., Dai, J., Sheng, Q., Zhang, L., Xia, Q., Wu, J., & Zeng, R. (2004) · Molecular & Cellular Proteomics · doi:10.1074/mcp.m400079-mcp200 · Cited by 77 · see citing works

Proteomic analysis of mouse liver plasma membrane: Use of differential extraction to enrich hydrophobic membrane proteins

Zhang, L., Xie, J., Xie, W., Liu, X., Tang, X., Cao, R., Hu, W., Nie, S., Fan, C., & Liang, S. (2005) · PROTEOMICS · doi:10.1002/pmic.200401318 · Cited by 77 · see citing works

Emerging roles of mitochondria in the evolution, biogenesis, and function of peroxisomes

Mohanty, A., & McBride, H. M. (2013) · Frontiers in Physiology · doi:10.3389/fphys.2013.00268 · Cited by 76 · see citing works

Protein transport into peroxisomes: Knowns and unknowns

Francisco, T., Rodrigues, T. A., Dias, A. F., Barros‐Barbosa, A., Bicho, D., & Azevedo, J. E. (2017) · BioEssays · doi:10.1002/bies.201700047 · Cited by 76 · see citing works

A leucine‐rich repeat membrane protein, 5T4, is expressed by a subtype of granule cells with dendritic arbors in specific strata of the mouse olfactory bulb

Imamura, F., Nagao, H., Naritsuka, H., Murata, Y., Taniguchi, H., & Mori, K. (2006) · The Journal of Comparative Neurology · doi:10.1002/cne.20896 · Cited by 75 · see citing works

Chaperone and Protease Functions of LON Protease 2 Modulate the Peroxisomal Transition and Degradation with Autophagy

Goto‐Yamada, S., Mano, S., Nakamori, C., Kondo, M., Yamawaki, R., Kato, A., & Nishimura, M. (2014) · Plant and Cell Physiology · doi:10.1093/pcp/pcu017 · Cited by 71 · see citing works

Insights into the membrane proteome of rat liver peroxisomes: Microsomal glutathione‐S‐transferase is shared by both subcellular compartments

Islinger, M., Lüers, G. H., Zischka, H., Ueffing, M., & Völkl, A. (2005) · PROTEOMICS · doi:10.1002/pmic.200401347 · Cited by 70 · see citing works

The proteome map of spinach leaf peroxisomes indicates partial compartmentalization of phylloquinone (vitamin K1) biosynthesis in plant peroxisomes

Babujee, L., Wurtz, V., Ma, C., Lueder, F., Soni, P., DORSSELAER, A. V., & Reumann, S. (2010) · Journal of Experimental Botany · doi:10.1093/jxb/erq014 · Cited by 70 · see citing works

The biochemistry and physiology of long-chain dicarboxylic acid metabolism

Ranea‐Robles, P., & Houten, S. M. (2023) · Biochemical Journal · doi:10.1042/bcj20230041 · Cited by 70 · see citing works

Peroxisome degradation in mammals: mechanisms of action, recent advances, and perspectives

Nordgren, M., Wang, B., Apanasets, O., & Fransen, M. (2013) · Frontiers in Physiology · doi:10.3389/fphys.2013.00145 · Cited by 67 · see citing works

Multiple Intracellular Locations of Lon Protease in Arabidopsis: Evidence for the Localization of AtLon4 to Chloroplasts

Ostersetzer, O., Kato, Y., Adam, Z., & Sakamoto, W. (2007) · Plant and Cell Physiology · doi:10.1093/pcp/pcm052 · Cited by 67 · see citing works

Proteome Analysis of Peroxisomes from Etiolated Arabidopsis Seedlings Identifies a Peroxisomal Protease Involved in β-Oxidation and Development

Quan, S., Yang, P., Cassin-Ross, G., Kaur, N., Switzenberg, R., Aung, K., Li, J., & Hu, J. (2013) · PLANT PHYSIOLOGY · doi:10.1104/pp.113.223453 · Cited by 64 · see citing works

New insights into the peroxisomal protein inventory: Acyl-CoA oxidases and -dehydrogenases are an ancient feature of peroxisomes

Camões, F., Islinger, M., Guimarães, S., Kilaru, S., Schuster, M., Godinho, L. F., Steinberg, G., & Schrader, M. (2014) · Biochimica et Biophysica Acta (BBA) - Molecular Cell Research · doi:10.1016/j.bbamcr.2014.10.005 · Cited by 63 · see citing works

Autophagic degradation of peroxisomes in mammals

Zientara‐Rytter, K., & Subramani, S. E. (2016) · Biochemical Society Transactions · doi:10.1042/bst20150268 · Cited by 63 · see citing works

Hepatic dysfunction in peroxisomal disorders

Baes, M. I., & Veldhoven, P. P. V. (2015) · Biochimica et Biophysica Acta (BBA) - Molecular Cell Research · doi:10.1016/j.bbamcr.2015.09.035 · Cited by 62 · see citing works

Two Proteases, Trypsin Domain-containing 1 (Tysnd1) and Peroxisomal Lon Protease (PsLon), Cooperatively Regulate Fatty Acid β-Oxidation in Peroxisomal Matrix

Okumoto, K., Kametani, Y., & Fujiki, Y. (2011) · Journal of Biological Chemistry · doi:10.1074/jbc.m111.285197 · Cited by 63 · see citing works

Proteomic analysis of plasma membrane vesicles isolated from the rat renal cortex

Cutillas, P. R., Biber, J., Marks, J., Jacob, R. J., Stieger, B., Cramer, R., Waterfield, M. D., Burlingame, A. L., & Unwin, R. J. (2004) · PROTEOMICS · doi:10.1002/pmic.200400886 · Cited by 62 · see citing works

Peroxisomal Metabolite and Cofactor Transport in Humans

Chornyi, S., IJlst, L., van Roermund, C. W. T., Wanders, R. J. A., & Waterham, H. R. (2021) · Frontiers in Cell and Developmental Biology · doi:10.3389/fcell.2020.613892 · Cited by 61 · see citing works

The Import Competence of a Peroxisomal Membrane Protein Is Determined by Pex19p before the Docking Step

Pinto, M. P., Grou, C. P. O., Alencastre, I. S., Oliveira, M. E., Sá-Miranda, C., Fransen, M., & Azevedo, J. E. (2006) · Journal of Biological Chemistry · doi:10.1074/jbc.m607183200 · Cited by 61 · see citing works

Toward a definition of the complete proteome of plant peroxisomes: Where experimental proteomics must be complemented by bioinformatics

Reumann, S. (2011) · PROTEOMICS · doi:10.1002/pmic.201000681 · Cited by 61 · see citing works

Peroxisomal proteomics, a new tool for risk assessment of peroxisome proliferating pollutants in the marine environment

Mi, J., Orbea, A., Syme, N. R., Ahmed, M., Cajaraville, M. P., & Cristóbal, S. (2005) · PROTEOMICS · doi:10.1002/pmic.200401243 · Cited by 60 · see citing works

Peroxisomal Proteostasis Involves a Lon Family Protein That Functions as Protease and Chaperone

Bartoszewska, M., Williams, C., Kikhney, A., Opaliński, Ł., van Roermund, C. W. T., de Boer, R., Marten Veenhuis, A., & van der Klei, I. J. (2012) · Journal of Biological Chemistry · doi:10.1074/jbc.m112.381566 · Cited by 61 · see citing works

70-kDa peroxisomal membrane protein related protein (P70R/ABCD4) localizes to endoplasmic reticulum not peroxisomes, and NH2-terminal hydrophobic property determines the subcellular localization of ABC subfamily D proteins

Kashiwayama, Y., Seki, M., Yasui, A., Murasaki, Y., Morita, M., Yamashita, Y., Sakaguchi, M., Tanaka, Y., & Imanaka, T. (2008) · Experimental Cell Research · doi:10.1016/j.yexcr.2008.10.031 · Cited by 60 · see citing works

Defining the Plant Peroxisomal Proteome: From Arabidopsis to Rice

Kaur, N., & Hu, J. (2011) · Frontiers in Plant Science · doi:10.3389/fpls.2011.00103 · Cited by 59 · see citing works

Contribution of Peroxisome-specific Isoform of Lon Protease in Sorting PTS1 Proteins to Peroxisomes

Omi, S., Nakata, R., Okamura‐Ikeda, K., Konishi, H., & Taniguchi, H. (2008) · The Journal of Biochemistry · doi:10.1093/jb/mvn020 · Cited by 32 · see citing works

Isolation and Evaluation of Different Peroxisomes Subppopulations from Rat Liver

Islinger, M., Abdolzade‐Bavil, A., Liebler, S. S., Dower, S., Eckerskorn, C., Völkl, A., & Weber, G. (2008) · Journal of Proteomics & Bioinformatics · doi:10.4172/jpb.s1000124

Identifying novel peroxisome-associated proteins in mouse liver and pig heart by implementing different quantitative proteomics approaches

Singin, Ö. (2024) · heiDOK (Heidelberg University) · doi:10.11588/heidok.00035487

Proteomics characterization of mouse kidney peroxisomes by tandem mass spectrometry and protein correlation profiling

Wiese, S., Gronemeyer, T., Ofman, R., Kunze, M., Grou, C. P., Almeida, J. A., Eisenacher, M., Stephan, C., Hayen, H., Schollenberger, L., et al. (2007) · Molecular &amp; Cellular Proteomics · doi:10.1074/mcp.m700169-mcp200 · Cited by 231 · see citing works

The Proteomics Toolbox Applied to Peroxisomes

Oeljeklaus, S., Schummer, A., & Warscheid, B. (2014) · Springer eBooks · doi:10.1007/978-3-7091-1788-0_12 · Cited by 2 · see citing works