Proteomics characterization of mouse kidney peroxisomes by tandem mass spectrometry and protein correlation profiling

A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding

Bradford, M. M. (1976) · Analytical Biochemistry · doi:10.1016/0003-2697(76)90527-3 · Cited by 255,302 · see citing works

Algorithm AS 136: A K-Means Clustering Algorithm

Hartigan, J. A., & Wong, M. A. (1979) · Applied Statistics · doi:10.2307/2346830 · Cited by 14,523 · see citing works

A Model for Random Sampling and Estimation of Relative Protein Abundance in Shotgun Proteomics

Liu, H., Sadygov, R. G., & Yates, J. R. (2004) · Analytical Chemistry · doi:10.1021/ac0498563 · Cited by 2,486 · see citing works

PSORT: a program for detecting sorting signals in proteins and predicting their subcellular localization

Nakai, K., & Horton, P. (1999) · Trends in Biochemical Sciences · doi:10.1016/s0968-0004(98)01336-x · Cited by 2,181 · cited 3× · see citing works

Proteomic characterization of the human centrosome by protein correlation profiling

Andersen, J. S., Wilkinson, C. J., Mayor, T., Mortensen, P., Nigg, E. A., & Mann, M. (2003) · Nature · doi:10.1038/nature02166 · Cited by 1,319 · see citing works

Trypsin Cleaves Exclusively C-terminal to Arginine and Lysine Residues

Olsen, J. V., Ong, S., & Mann, M. (2004) · Molecular & Cellular Proteomics · doi:10.1074/mcp.t400003-mcp200 · Cited by 1,258 · see citing works

Method to Correlate Tandem Mass Spectra of Modified Peptides to Amino Acid Sequences in the Protein Database

Yates, J. R., Eng, J. K., McCormack, A. L., & Schieltz, D. M. (1995) · Analytical Chemistry · doi:10.1021/ac00104a020 · Cited by 1,254 · see citing works

AAA+ proteins: have engine, will work

Hanson, P., & Whiteheart, S. (2005) · Nature reviews. Molecular cell biology · doi:10.1038/nrm1684 · Cited by 1,237 · see citing works

Biochemistry of mammalian peroxisomes revisited

Wanders, R. J. A., & Waterham, H. R. (2006) · Annual Review of Biochemistry · doi:10.1146/annurev.biochem.74.082803.133329 · Cited by 995 · see citing works

ANALYTICAL STUDY OF MICROSOMES AND ISOLATED SUBCELLULAR MEMBRANES FROM RAT LIVER

Beaufay, H., Amar-Costesec, A., Feytmans, E., Thinès-Sempoux, D., Wibo, M., Robbi, M., & Berthet, J. (1974) · The Journal of Cell Biology · doi:10.1083/jcb.61.1.188 · Cited by 834 · see citing works

A Mammalian Organelle Map by Protein Correlation Profiling

Foster, L. J., de Hoog, C. L., Zhang, Y., Zhang, Y., Xie, X. S., Mootha, V. K., & Mann, M. (2006) · Cell · doi:10.1016/j.cell.2006.03.022 · Cited by 573 · see citing works

Mapping the Arabidopsis organelle proteome

Dunkley, T. P. J., Hester, S., Shadforth, I., Runions, J., Weimar, T., Hanton, S. L., Griffin, J. L., Bessant, C., Brandizzí, F., Hawes, C. R., et al. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0506958103 · Cited by 523 · see citing works

Quantitative Proteomics Analysis of the Secretory Pathway

Gilchrist, A., Au, C. E., Hiding, J., Bell, A. W., Fernández-Rodrı́guez, J., Lesimple, S., Nagaya, H., Roy, L., Gosline, S. J. C., Hallett, M. T., et al. (2006) · Cell · doi:10.1016/j.cell.2006.10.036 · Cited by 457 · see citing works

MPV17 encodes an inner mitochondrial membrane protein and is mutated in infantile hepatic mitochondrial DNA depletion

Spinazzola, A., Viscomi, C., Fernandez-Vizarra, E., Carrara, F., D'Adamo, P., Calvo, S., Marsano, R. M., Donnini, C., Weiher, H., Strisciuglio, P., et al. (2006) · Nature Genetics · doi:10.1038/ng1765 · Cited by 427 · see citing works

Proteomics of organelles and large cellular structures

Yates, J. R., Gilchrist, A., Howell, K. E., & Bergeron, J. J. M. (2005) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm1711 · Cited by 390 · see citing works

Polypeptide and phospholipid composition of the membrane of rat liver peroxisomes: comparison with endoplasmic reticulum and mitochondrial membranes.

Fujiki, Y., Fowler, S., Shio, H., Hubbard, A. L., & Lazarow, P. B. (1982) · The Journal of Cell Biology · doi:10.1083/jcb.93.1.103 · Cited by 373 · see citing works

A Human Gene Responsible for Zellweger Syndrome That Affects Peroxisome Assembly

Shimozawa, N., Tsukamoto, T., Suzuki, Y., Orii, T., Shirayoshi, Y., Mori, T., & Fujiki, Y. (1992) · Science · doi:10.1126/science.1546315 · Cited by 361 · see citing works

Pex19 Binds Multiple Peroxisomal Membrane Proteins, Is Predominantly Cytoplasmic, and Is Required for Peroxisome Membrane Synthesis

Sacksteder, K. A., Jones, J. M., South, S. T., Li, X., Liu, Y., & Gould, S. J. (2000) · The Journal of Cell Biology · doi:10.1083/jcb.148.5.931 · Cited by 317 · see citing works

The gene responsible for adrenoleukodystrophy encodes a peroxisomal membrane protein

Mosser, J., Lutz, Y., Stoeckel, M. E., Sarde, C. O., Kretz, C., Douar, A. M., Lopez, J., Aubourg, P., & Mandel, J. L. (1994) · Human Molecular Genetics · doi:10.1093/hmg/3.2.265 · Cited by 281 · see citing works

The role Acyl-CoA thioesterases play in mediating intracellular lipid metabolism

Hunt, M. C., & Alexson, S. E. H. (2002) · Progress in Lipid Research · doi:10.1016/s0163-7827(01)00017-0 · Cited by 278 · see citing works

Proteomic Analysis of Rat Liver Peroxisome

Kikuchi, M., Hatano, N., Yokota, S., Shimozawa, N., Imanaka, T., & Taniguchi, H. (2004) · Journal of Biological Chemistry · doi:10.1074/jbc.m305623200 · Cited by 258 · see citing works

Gene redundancy and pharmacological gene therapy: Implications for X-linked adrenoleukodystrophy

Kemp, S., Wei, H.-M., Lu, J.-F., Braiterman, L. T., McGuinness, M. C., Moser, A. B., Watkins, P. A., & Smith, K. D. (1998) · Nature Medicine · doi:10.1038/3242 · Cited by 249 · see citing works

Proteomic analysis of the mouse liver mitochondrial inner membrane

Da Cruz, S., Xenarios, I., Langridge, J., Vilbois, F., Parone, P. A., & Martinou, J.-C. (2003) · Journal of Biological Chemistry · doi:10.1074/jbc.m304940200 · Cited by 247 · see citing works

Organellar proteomics: turning inventories into insights

Andersen, J., & Mann, M. (2006) · EMBO Reports · doi:10.1038/sj.embor.7400780 · Cited by 195 · see citing works

X-linked adrenoleukodystrophy: Genes, mutations, and phenotypes

Smith, K. D., Kemp, S., Braiterman, L. T., Lu, J.-F., Wei, H.-M., Geraghty, M., Stetten, G., Bergin, J. S., Pevsner, J., & Watkins, P. A. (1999) · Neurochemical Research · doi:10.1023/a:1022535930009 · Cited by 190 · see citing works

Subcellular localization and physiological role of α-methylacyl-CoA racemase

Ferdinandusse, S., Denis, S. W., IJlst, L., Dacremont, G., Waterham, H. R., & Wanders, R. J. A. (2000) · Journal of Lipid Research · doi:10.1016/s0022-2275(20)31983-0 · Cited by 183 · see citing works

Approaching complete peroxisome characterization by gas-phase fractionation

Yi, E. C., Marelli, M., Lee, H., Purvine, S. O., Aebersold, R. H., Aitchison, J. D., & Goodlett, D. R. (2002) · Electrophoresis · doi:10.1002/1522-2683(200209)23:18 · Cited by 183 · see citing works

The import receptor for the peroxisomal targeting signal 2 (PTS2) in Saccharomyces cerevisiae is encoded by the PAS7 gene.

Rehling, P., Marzioch, M., Niesen, F. E., Wittke, E., Marten Veenhuis, A., & Kunau, W. H. (1996) · The EMBO Journal · doi:10.1002/j.1460-2075.1996.tb00653.x · Cited by 177 · see citing works

Quantitative mass spectrometry reveals a role for the GTPase Rho1p in actin organization on the peroxisome membrane

Marelli, M., Smith, J. J., Jung, S., Yi, E. C., Nesvizhskii, A. I., Christmas, R. H., Saleem, R. A., Tam, Y. Y. C., Fagarasanu, A. D., Goodlett, D. R., et al. (2004) · The Journal of Cell Biology · doi:10.1083/jcb.200404119 · Cited by 153 · see citing works

Adrenoleukodystrophy-Related Protein Can Compensate Functionally for Adrenoleukodystrophy Protein Deficiency (X-ALD): Implications for Therapy

Netik, A., Forss-Petter, S., Holzinger, A., Molzer, B., Unterrainer, G., & Berger, J. (1999) · Human Molecular Genetics · doi:10.1093/hmg/8.5.907 · Cited by 148 · see citing works

Biogenesis of peroxisomes

Heiland, I., & Erdmann, R. (2005) · FEBS Journal · doi:10.1111/j.1742-4658.2005.04690.x · Cited by 144 · see citing works

Sjögren-Larsson syndrome: Diversity of mutations and polymorphisms in the fatty aldehyde dehydrogenase gene (ALDH3A2)

Rizzo, W. B., & Carney, G. (2005) · Human Mutation · doi:10.1002/humu.20181 · Cited by 138 · see citing works

Subcellular proteomics

Dreger, M. (2003) · Mass Spectrometry Reviews · doi:10.1002/mas.10047 · Cited by 138 · see citing works

Cloning, Sequencing, and Heterologous Expression of the Murine Peroxisomal Flavoprotein, N1-Acetylated Polyamine Oxidase

Wu, T., Yankovskaya, V. L., & McIntire, W. S. (2003) · Journal of Biological Chemistry · doi:10.1074/jbc.m302149200 · Cited by 120 · see citing works

The stress proteome of Enterococcus faecalis

Giárd, J.-C., Laplace, J., Rincé, A., Pichereau, V., Benachour, A., Leboeuf, C., Flahaut, S., Auffray, Y., & Hartke, A. (2001) · Electrophoresis · doi:10.1002/1522-2683(200108)22:14 · Cited by 120 · see citing works

Peroxisomal ABC transporters

Theodoulou, F. L., Holdsworth, M. J., & Baker, A. (2006) · FEBS Letters · doi:10.1016/j.febslet.2005.12.095 · Cited by 119 · see citing works

Molecular cloning of a cDNA coding for mouse liver xanthine dehydrogenase. Regulation of its transcript by interferons in vivo

Terao, M., Cazzaniga, G., Ghezzi, P., Bianchi, M., Francesco Falciani, B., Perani, P., & Garattini, E. (1992) · Biochemical Journal · doi:10.1042/bj2830863 · Cited by 117 · see citing works

The peroxisomal ABC transporter family

Wanders, R. J. A., Visser, W. F., van Roermund, C. W. T., Kemp, S., & Waterham, H. R. (2006) · Pflügers Archiv - European Journal of Physiology · doi:10.1007/s00424-006-0142-x · Cited by 111 · see citing works

The glomerulosclerosis gene Mpv17 encodes a peroxisomal protein producing reactive oxygen species.

Zwacka, R. M., Reuter, A., Pfaff, E., Moll, J., Gorgas, K., Karasawa, M., & Weiher, H. (1994) · The EMBO Journal · doi:10.1002/j.1460-2075.1994.tb06842.x · Cited by 108 · see citing works

The four murine peroxisomal ABC-transporter genes differ in constitutive, inducible and developmental expression

Berger, J., Albet, S., Bentejac, M., Netik, A., Holzinger, A., Roscher, A. A., Bugaut, M., & Forss‐Petter, S. (1999) · European Journal of Biochemistry · doi:10.1046/j.1432-1327.1999.00772.x · Cited by 106 · see citing works

MCD Encodes Peroxisomal and Cytoplasmic Forms of Malonyl-CoA Decarboxylase and Is Mutated in Malonyl-CoA Decarboxylase Deficiency

Sacksteder, K. A., Morrell, J. C., Wanders, R. J. A., Matalon, R. K., & Gould, S. J. (1999) · Journal of Biological Chemistry · doi:10.1074/jbc.274.35.24461 · Cited by 105 · see citing works

Characterization of the Mammalian Peroxisomal Import Machinery

Reguenga, C., Oliveira, M. E., Gouveia, A., Sá-Miranda, C., & Azevedo, J. E. (2001) · Journal of Biological Chemistry · doi:10.1074/jbc.m104114200 · Cited by 99 · see citing works

The Human Bile Acid-CoA:Amino Acid N-Acyltransferase Functions in the Conjugation of Fatty Acids to Glycine

O'Byrne, J., Hunt, M. C., Rai, D. K., Saeki, M., & Alexson, S. E. H. (2003) · Journal of Biological Chemistry · doi:10.1074/jbc.m300987200 · Cited by 96 · see citing works

The mouse Nudt7 gene encodes a peroxisomal nudix hydrolase specific for coenzyme A and its derivatives

Gasmi, L., & McLennan, A. G. (2001) · Biochemical Journal · doi:10.1042/0264-6021:3570033 · Cited by 88 · see citing works

A revised nomenclature for mammalian acyl-CoA thioesterases/hydrolases

Hunt, M. C., Yamada, J., Maltais, L. J., Wright, M. W., Podesta, E. J., & Alexson, S. E. H. (2005) · Journal of Lipid Research · doi:10.1194/jlr.e500003-jlr200 · Cited by 85 · see citing works

Proteomic analysis of mouse kidney peroxisomes: identification of RP2p as a peroxisomal nudix hydrolase with acyl-CoA diphosphatase activity

Ofman, R., Speijer, D., Leen, R., & Wanders, R. J. A. (2005) · Biochemical Journal · doi:10.1042/bj20050893 · Cited by 83 · see citing works

X-linked adrenoleukodystrophy: very long-chain fatty acid metabolism, ABC half-transporters and the complicated route to treatment

Kemp, S., & Wanders, R. J. A. (2007) · Molecular Genetics and Metabolism · doi:10.1016/j.ymgme.2006.10.001 · Cited by 82 · see citing works

Peroxisome biogenesis and the role of protein import

Brown, L., & Baker, A. (2003) · Journal of Cellular and Molecular Medicine · doi:10.1111/j.1582-4934.2003.tb00241.x · Cited by 81 · see citing works

Intramitochondrial protein sorting. Isolation and characterization of the yeast MSP1 gene which belongs to a novel family of putative ATPases.

Nakai, M., Endo, T., Hase, T., & Matsubara, H. (1993) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(20)80519-5 · Cited by 78 · see citing works

Comparison of two-dimensional electrophoresis patterns of heat shock protein Hsp27 species in normal and cardiomyopathic hearts

Scheler, C., Li, X., Salnikow, J., Dunn, M. J., & Jungblut, P. R. (1999) · Electrophoresis · doi:10.1002/(sici)1522-2683(19991201)20:18 · Cited by 72 · see citing works

Methods of quantitative proteomics and their application to plant organelle characterization

Lilley, K. S. (2006) · Journal of Experimental Botany · doi:10.1093/jxb/erj141 · Cited by 71 · see citing works

Insights into the membrane proteome of rat liver peroxisomes: Microsomal glutathione‐S‐transferase is shared by both subcellular compartments

Islinger, M., Lüers, G. H., Zischka, H., Ueffing, M., & Völkl, A. (2005) · PROTEOMICS · doi:10.1002/pmic.200401347 · Cited by 70 · see citing works

The use of isotope-coded affinity tags (ICAT) to study organelle proteomes in Arabidopsis thaliana

Dunkley, T. P. J., Dupree, P., Watson, R. B., & Lilley, K. S. (2004) · Biochemical Society Transactions · doi:10.1042/bst0320520 · Cited by 65 · see citing works

ATP Binding/Hydrolysis by and Phosphorylation of Peroxisomal ATP-binding Cassette Proteins PMP70 (ABCD3) and Adrenoleukodystrophy Protein (ABCD1)

Tanaka, A. R., Tanabe, K., Morita, M., Kurisu, M., Kashiwayama, Y., Matsuo, M., Kioka, N., Amachi, T., Imanaka, T., & Ueda, K. (2002) · Journal of Biological Chemistry · doi:10.1074/jbc.m205079200 · Cited by 63 · see citing works

Analytical study of microsomes and isolated subcellular membranes from rat liver. V. Immunological localization of cytochrome b5 by electron microscopy: methodology and application to various subcellular fractions.

Fowler, S., Remacle, J., Trouet, A., Beaufay, H., Berthet, J., Wibo, M., & Hauser, P. (1976) · The Journal of Cell Biology · doi:10.1083/jcb.71.2.535 · Cited by 63 · see citing works

The Peroxisome Proliferator-induced Cytosolic Type I Acyl-CoA Thioesterase (CTE-I) Is a Serine-Histidine-Aspartic Acid α/β Hydrolase

Huhtinen, K., O'Byrne, J., Lindquist, P. J. G., Contreras, J. A., & Alexson, S. E. H. (2002) · Journal of Biological Chemistry · doi:10.1074/jbc.m109040200 · Cited by 57 · see citing works

Automated reprocessing pipeline for searching heterogeneous mass spectrometric data of the HUPO Brain Proteome Project pilot phase

Stephan, C., Reidegeld, K. A., Hamacher, M., van Hall, A., Marcus, K., Taylor, C. F., JONES, P. M., Müller, M., Apweiler, R., Martens, L., et al. (2006) · PROTEOMICS · doi:10.1002/pmic.200600294 · Cited by 55 · see citing works

A peptide preconcentration approach for nano‐high‐performance liquid chromatography to diminish memory effects

Schaefer, H., Chervet, J.-P., Bunse, C., Joppich, C., Meyer, H. E., & Marcus, K. (2004) · PROTEOMICS · doi:10.1002/pmic.200300801 · Cited by 53 · see citing works

Proteomics of the peroxisome

Saleem, R. A., Smith, J. J., & Aitchison, J. D. (2006) · Biochimica et Biophysica Acta (BBA) - Molecular Cell Research · doi:10.1016/j.bbamcr.2006.09.005 · Cited by 49 · see citing works

Sjögren‐Larsson syndrome

Gordon, N. S. (2007) · Developmental Medicine & Child Neurology · doi:10.1111/j.1469-8749.2007.00152.x · Cited by 49 · see citing works

Molecular Cloning and Characterization of Two Mouse Peroxisome Proliferator-activated Receptor α (PPARα)-regulated Peroxisomal Acyl-CoA Thioesterases

Westin, M., Alexson, S. E. H., & Hunt, M. C. (2004) · Journal of Biological Chemistry · doi:10.1074/jbc.m313863200 · Cited by 46 · see citing works

A peroxisomal acyltransferase in mouse identifies a novel pathway for taurine conjugation of fatty acids

Reilly, S., O'Shea, E. M., Andersson, U., O'Byrne, J., Alexson, S. E. H., & Hunt, M. C. (2006) · The FASEB Journal · doi:10.1096/fj.06-6919com · Cited by 46 · see citing works

Differential regulation of cytosolic and peroxisomal bile acid amidation by PPARα activation favors the formation of unconjugated bile acids

Solaas, K., Kase, B. F., Pham, V., Bamberg, K., Hunt, M. C., & Alexson, S. E. H. (2004) · Journal of Lipid Research · doi:10.1194/jlr.m300291-jlr200 · Cited by 42 · see citing works

2-Hydroxyphytanic acid oxidase activity in rat and human liver and its deficiency in the Zellweger syndrome

Wanders, R. J. A., van Roermund, C. W. T., Schor, D. S. M., ten Brink, H. J., & Jakobs, C. (1994) · Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease · doi:10.1016/0925-4439(94)90092-2 · Cited by 36 · see citing works

Immunoblot analysis of peroxisomal proteins in liver and fibroblasts from patients

Wanders, R. J. A., Dekker, C., Ofman, R., Schutgens, R. B. H., & Mooijer, P. A. W. (1995) · Journal of Inherited Metabolic Disease · doi:10.1007/bf00711433 · Cited by 33 · see citing works

Identification of a 24 kDa intrinsic membrane protein from mammalian peroxisomes

Reguenga, C., Oliveira, M. E., Gouveia, A., Eckerskorn, C., Sá-Miranda, C., & Azevedo, J. E. (1999) · Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression · doi:10.1016/s0167-4781(99)00061-5 · Cited by 28 · see citing works

Cloning, Mapping, Genomic Organization, and Expression of Mouse M-LP, a New Member of the Peroxisomal Membrane Protein Mpv17 Domain Family

Iida, R., Yasuda, T., Tsubota, E., Matsuki, T., & Kishi, K. (2001) · Biochemical and Biophysical Research Communications · doi:10.1006/bbrc.2001.4769 · Cited by 27 · see citing works

Alkaline Density Gradient Floatation of Membranes: Polypeptide Composition of the Mammalian Peroxisomal Membrane

Gouveia, A., Reguenga, C., Oliveira, M. E., Eckerskorn, C., Sá-Miranda, C., & Azevedo, J. E. (1999) · Analytical Biochemistry · doi:10.1006/abio.1999.4281 · Cited by 21 · see citing works

Genomic Structure ofPEX13,a Candidate Peroxisome Biogenesis Disorder Gene

Björkman, J., Stetten, G., Moore, C. S., Gould, S. J., & Crane, D. I. (1998) · Genomics · doi:10.1006/geno.1998.5520 · Cited by 15 · see citing works

Microsomal Aldehyde Dehydrogenase or Its Cross-Reacting Protein Exists in Outer Mitochondrial Membranes and Peroxisomal Membranes in Rat Liver.

Miyauchi, K., Yamamoto, A., Masaki, R., Fujiki, Y., & Tashiro, Y. (1993) · Cell Structure and Function · doi:10.1247/csf.18.427 · Cited by 13 · see citing works

Mistargeted mitochondrial proteins activate a proteostatic response in the cytosol

Wróbel, L., Topf, U., Brągoszewski, P., Wiese, S., Sztolsztener, M. E., Oeljeklaus, S., Varabyova, A., Lirski, M., Chrościcki, P., Mroczek, S., et al. (2015) · Nature · doi:10.1038/nature14951 · Cited by 458 · see citing works

Quantitation in Mass-Spectrometry-Based Proteomics

Schulze, W. X., & Usadel, B. (2010) · Annual Review of Plant Biology · doi:10.1146/annurev-arplant-042809-112132 · Cited by 344 · see citing works

Biochemistry and genetics of inherited disorders of peroxisomal fatty acid metabolism

Veldhoven, P. P. V. (2010) · Journal of Lipid Research · doi:10.1194/jlr.r005959 · Cited by 328 · see citing works

In-Depth Proteome Analysis of Arabidopsis Leaf Peroxisomes Combined with in Vivo Subcellular Targeting Verification Indicates Novel Metabolic and Regulatory Functions of Peroxisomes

Reumann, S., Quan, S., Aung, K., Yang, P., Manandhar-Shrestha, K., Holbrook, D., Linka, N., Switzenberg, R., Wilkerson, C. G., Weber, A. P. M., et al. (2009) · PLANT PHYSIOLOGY · doi:10.1104/pp.109.137703 · Cited by 262 · see citing works

ACBD5 and VAPB mediate membrane associations between peroxisomes and the ER

Costello, J. L., Castro, I. G., Hacker, C., Schrader, T. A., Metz, J., Zeuschner, D., Azadi, A. S., Godinho, L. F., Costina, V., Findeisen, P., et al. (2017) · The Journal of Cell Biology · doi:10.1083/jcb.201607055 · Cited by 251 · see citing works

MITRAC Links Mitochondrial Protein Translocation to Respiratory-Chain Assembly and Translational Regulation

Mick, D. U., Dennerlein, S., Wiese, H., Reinhold, R., Pacheu-Grau, D., Lorenzi, I., Sasarman, F., Weraarpachai, W., Shoubridge, E. A., Warscheid, B., et al. (2012) · Cell · doi:10.1016/j.cell.2012.11.053 · Cited by 250 · see citing works

Mutations in ABCD4 cause a new inborn error of vitamin B12 metabolism

Coelho, D., Kim, J. C., Miousse, I. R., Fung, S., du Moulin, M., Buers, I., Suormala, T., Burda, P., Frapolli, M., Stucki, M., et al. (2012) · Nature Genetics · doi:10.1038/ng.2386 · Cited by 231 · see citing works

Metabolic functions of peroxisomes in health and disease

Wanders, R. J. A. (2013) · Biochimie · doi:10.1016/j.biochi.2013.08.022 · Cited by 232 · see citing works

The physiological functions of human peroxisomes

Wanders, R. J. A., Baes, M., Ribeiro, D., Ferdinandusse, S., & Waterham, H. R. (2023) · Physiological Reviews · doi:10.1152/physrev.00051.2021 · Cited by 228 · see citing works

Peroxisome‐mitochondria interplay and disease

Schrader, M., Costello, J. L., Godinho, L. F., & Islinger, M. (2015) · Journal of Inherited Metabolic Disease · doi:10.1007/s10545-015-9819-7 · Cited by 217 · see citing works

Genome-wide Characterization of miR-34a Induced Changes in Protein and mRNA Expression by a Combined Pulsed SILAC and Microarray Analysis

Kaller, M., Liffers, S., Oeljeklaus, S., Kuhlmann, K., Röh, S., Hoffmann, R. F. G., Warscheid, B., & Hermeking, H. (2011) · Molecular & Cellular Proteomics · doi:10.1074/mcp.m111.010462 · Cited by 203 · see citing works

The emerging role of acyl-CoA thioesterases and acyltransferases in regulating peroxisomal lipid metabolism

Hunt, M. C., Siponen, M. I., & Alexson, S. E. H. (2012) · Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease · doi:10.1016/j.bbadis.2012.03.009 · Cited by 196 · see citing works

Peroxisomes in brain development and function

Berger, J., Dorninger, F., Forss-Petter, S., & Kunze, M. (2016) · Biochimica et Biophysica Acta (BBA) - Molecular Cell Research · doi:10.1016/j.bbamcr.2015.12.005 · Cited by 194 · see citing works

The peroxisome: still a mysterious organelle

Schrader, M., & Fahimi, H. D. (2008) · Histochemistry and Cell Biology · doi:10.1007/s00418-008-0396-9 · Cited by 192 · see citing works

Nanobody Technology: A Versatile Toolkit for Microscopic Imaging, Protein–Protein Interaction Analysis, and Protein Function Exploration

Beghein, E., & Gettemans, J. (2017) · Frontiers in Immunology · doi:10.3389/fimmu.2017.00771 · Cited by 190 · see citing works

A Quantitative Proteomics Analysis of Subcellular Proteome Localization and Changes Induced by DNA Damage

Boisvert, F.-M., Lam, Y. W., Lamont, D., & Lamond, A. I. (2010) · Molecular & Cellular Proteomics · doi:10.1074/mcp.m900429-mcp200 · Cited by 185 · see citing works

Peroxisome biogenesis disorders: Biological, clinical and pathophysiological perspectives

Braverman, N., D’Agostino, D., & MacLean, G. E. (2013) · Developmental Disabilities Research Reviews · doi:10.1002/ddrr.1113 · Cited by 162 · see citing works

Organelle interplay-peroxisome interactions in health and disease.

Schrader, M., Kamoshita, M., & Islinger, M. (2020) · Journal of Inherited Metabolic Disease · doi:10.1002/jimd.12083 · Cited by 149 · see citing works

Fluorescent nanothermometers for intracellular thermal sensing.

Jaque, D., del Rosal, B., Rodríguez, E., Maestro, L. M., Haro-González, P., & Solé, J. (2014) · Nanomedicine · doi:10.2217/nnm.14.59 · Cited by 125 · see citing works

Members of the E2D (UbcH5) Family Mediate the Ubiquitination of the Conserved Cysteine of Pex5p, the Peroxisomal Import Receptor

Grou, C. P. O., Carvalho, A. F., Pinto, M. P., Wiese, S., Piechura, H., Meyer, H. E., Warscheid, B., Sá-Miranda, C., & Azevedo, J. E. (2008) · Journal of Biological Chemistry · doi:10.1074/jbc.m800402200 · Cited by 140 · see citing works

Subcellular proteomics

Christopher, J. A., Stadler, C., Martin, C. E., Morgenstern, M., Pan, Y., Betsinger, C. N., Rattray, D., Mahdessian, D., Gingras, A., Warscheid, B., et al. (2021) · Nature Reviews Methods Primers · doi:10.1038/s43586-021-00029-y · Cited by 137 · see citing works

Hitchhiking of Cu/Zn Superoxide Dismutase to Peroxisomes – Evidence for a Natural Piggyback Import Mechanism in Mammals

Islinger, M., Li, K. W., Seitz, J., Völkl, A., & Lüers, G. H. (2009) · Traffic · doi:10.1111/j.1600-0854.2009.00966.x · Cited by 138 · see citing works

Lipidomic and proteomic characterization of platelet extracellular vesicle subfractions from senescent platelets

Pienimaeki‐Roemer, A., Kuhlmann, K., Böttcher, A., Konovalova, T., Black, A., Orsó, E., Liebisch, G., Ahrens, M., Eisenacher, M., Meyer, H. E., et al. (2014) · Transfusion · doi:10.1111/trf.12874 · Cited by 126 · see citing works

Subcellular fractionation methods and strategies for proteomics

Lee, Y. H., Tan, H. T., & Chung, M. C. M. (2010) · PROTEOMICS · doi:10.1002/pmic.201000289 · Cited by 125 · see citing works

What Can Proteomics Tell Us About Platelets?

Burkhart, J. M., Gambaryan, S. P., Watson, S. P., Jurk, K., Walter, U., Sickmann, A., Heemskerk, J. W. M., & Zahedi, R. P. (2014) · Circulation Research · doi:10.1161/circresaha.114.301598 · Cited by 122 · see citing works

Peroxisome Biogenesis and Function

Kaur, N., Reumann, S., & Hu, J. (2009) · The Arabidopsis Book · doi:10.1199/tab.0123 · Cited by 122 · see citing works

Peroxisome biogenesis disorders

Argyriou, C., D’Agostino, D., & Braverman, N. (2016) · Translational Science of Rare Diseases · doi:10.3233/trd-160003 · Cited by 126 · see citing works

ACBD5 deficiency causes a defect in peroxisomal very long-chain fatty acid metabolism

Ferdinandusse, S., Falkenberg, K. D., Koster, J., Mooyer, P. A., Jones, R., van Roermund, C. W. T., Pizzino, A., Schrader, M., Wanders, R. J. A., Vanderver, A., et al. (2017) · Journal of Medical Genetics · doi:10.1136/jmedgenet-2016-104132 · Cited by 120 · see citing works

The similarity between N-terminal targeting signals for protein import into different organelles and its evolutionary relevance

Kunze, M., & Berger, J. (2015) · Frontiers in Physiology · doi:10.3389/fphys.2015.00259 · Cited by 117 · see citing works

Be different—The diversity of peroxisomes in the animal kingdom

Islinger, M., Cardoso, M. J., & Schrader, M. (2010) · Biochimica et Biophysica Acta (BBA) - Molecular Cell Research · doi:10.1016/j.bbamcr.2010.03.013 · Cited by 115 · see citing works

Mitochondrial Outer Membrane Proteome of Trypanosoma brucei Reveals Novel Factors Required to Maintain Mitochondrial Morphology

Niemann, M., Wiese, S., Mani, J., Chanfon, A., Jackson, C. B., Meisinger, C., Warscheid, B., & Schneider, A. (2012) · Molecular & Cellular Proteomics · doi:10.1074/mcp.m112.023093 · Cited by 107 · see citing works

The Proteome of Human Liver Peroxisomes: Identification of Five New Peroxisomal Constituents by a Label-Free Quantitative Proteomics Survey

Gronemeyer, T., Wiese, S., Ofman, R., Bunse, C., Pawlas, M., Hayen, H., Eisenacher, M., Stephan, C., Meyer, H. E., Waterham, H. R., et al. (2013) · PLoS ONE · doi:10.1371/journal.pone.0057395 · Cited by 111 · see citing works

Predicting the targeting of tail-anchored proteins to subcellular compartments in mammalian cells

Costello, J. L., Castro, I. G., Camões, F., Schrader, T. A., McNeall, D., Yang, J., Giannopoulou, E., Gomes, S. R. A. M., Pogenberg, V., Bonekamp, N. A., et al. (2017) · Journal of Cell Science · doi:10.1242/jcs.200204 · Cited by 107 · see citing works

Plasmalogen homeostasis – regulation of plasmalogen biosynthesis and its physiological consequence in mammals

Honsho, M., & Fujiki, Y. (2017) · FEBS Letters · doi:10.1002/1873-3468.12743 · Cited by 106 · see citing works

Proteomics methods for subcellular proteome analysis

Drissi, R., Dubois, M., & Boisvert, F. (2013) · FEBS Journal · doi:10.1111/febs.12502 · Cited by 104 · see citing works

Ubp15p, a Ubiquitin Hydrolase Associated with the Peroxisomal Export Machinery

Debelyy, M. O., Platta, H. W., Saffian, D., Hensel, A., Thoms, S., Meyer, H. E., Warscheid, B., Girzalsky, W., & Erdmann, R. (2011) · Journal of Biological Chemistry · doi:10.1074/jbc.m111.238600 · Cited by 104 · see citing works

Tmem16b is Specifically Expressed in the Cilia of Olfactory Sensory Neurons

Rasche, S., Toetter, B., Adler, J., Tschapek, A., Doerner, J. F., Kurtenbach, S., Hatt, H. H., Meyer, H. E., Warscheid, B., & Neuhaus, E. M. (2010) · Chemical Senses · doi:10.1093/chemse/bjq007 · Cited by 103 · see citing works

Peroxisomal Atg37 binds Atg30 or palmitoyl-CoA to regulate phagophore formation during pexophagy

Nazarko, T. Y., Ozeki, K., Till, A., Ramakrishnan, G., Lotfi, P., Yan, M., & Subramani, S. (2014) · Journal of Cell Biology · doi:10.1083/jcb.201307050 · Cited by 99 · see citing works

ACBD2/ECI2-Mediated Peroxisome-Mitochondria Interactions in Leydig Cell Steroid Biosynthesis

Fan, J., Li, X., Issop, L., Culty, M., & Papadopoulos, V. (2016) · Molecular Endocrinology · doi:10.1210/me.2016-1008 · Cited by 99 · see citing works

A Combined Approach of Quantitative Interaction Proteomics and Live-cell Imaging Reveals a Regulatory Role for Endoplasmic Reticulum (ER) Reticulon Homology Proteins in Peroxisome Biogenesis

David, C., Koch, J., Oeljeklaus, S., Laernsack, A., Melchior, S., Wiese, S., Schummer, A., Erdmann, R., Warscheid, B., & Brocard, C. (2013) · Molecular & Cellular Proteomics · doi:10.1074/mcp.m112.017830 · Cited by 94 · see citing works

Organelle dynamics and dysfunction: A closer link between peroxisomes and mitochondria

Camões, F., Bonekamp, N. A., Delille, H. K., & Schrader, M. (2008) · Journal of Inherited Metabolic Disease · doi:10.1007/s10545-008-1018-3 · Cited by 91 · see citing works

Glutathione and peroxisome redox homeostasis

Ferreira, M. J., Rodrigues, T. A., Pedrosa, A. G., Silva, A. R., Vilarinho, B. G., Francisco, T., & Azevedo, J. E. (2023) · Redox Biology · doi:10.1016/j.redox.2023.102917 · Cited by 94 · see citing works

Regulation of peroxisomal lipid metabolism: The role of acyl-CoA and coenzyme A metabolizing enzymes

Hunt, M. C., Tillander, V., & Alexson, S. E. H. (2014) · Biochimie · doi:10.1016/j.biochi.2013.12.018 · Cited by 87 · see citing works

Deciphering preferential interactions within supramolecular protein complexes: the proteasome case

Fabre, B., Lambour, T., Garrigues, L., Amalric, F., Vigneron, N., Menneteau, T., Stella, A., Monsarrat, B., den Eynde, B. J. V., Burlet‐Schiltz, O., et al. (2015) · Molecular Systems Biology · doi:10.15252/msb.20145497 · Cited by 87 · see citing works

The importance of ether-phospholipids: A view from the perspective of mouse models

da Silva, T. F., Sousa, V., Malheiro, A. R., & Brites, P. (2012) · Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease · doi:10.1016/j.bbadis.2012.05.014 · Cited by 86 · see citing works

Deficiency of a Retinal Dystrophy Protein, Acyl-CoA Binding Domain-containing 5 (ACBD5), Impairs Peroxisomal β-Oxidation of Very-long-chain Fatty Acids

Yagita, Y., Shinohara, K., Abe, Y., Nakagawa, K., Al-Owain, M., Alkuraya, F. S., & Fujiki, Y. (2017) · Journal of Biological Chemistry · doi:10.1074/jbc.m116.760090 · Cited by 85 · see citing works

A role for Mitochondrial Rho GTPase 1 (MIRO1) in motility and membrane dynamics of peroxisomes

Castro, I. G., Richards, D. M., Metz, J., Costello, J. L., Passmore, J. B., Schrader, T. A., Gouveia, A., Ribeiro, D., & Schrader, M. (2018) · Traffic · doi:10.1111/tra.12549 · Cited by 84 · see citing works

Getting a camel through the eye of a needle: the import of folded proteins by peroxisomes

Lanyon‐Hogg, T., Warriner, S. L., & Baker, A. (2010) · Biology of the Cell · doi:10.1042/bc20090159 · Cited by 83 · see citing works

Sub‐cellular localization of membrane proteins

Sadowski, P. G., Groen, A. J., Dupree, P., & Lilley, K. S. (2008) · PROTEOMICS · doi:10.1002/pmic.200800217 · Cited by 80 · see citing works

Short- and medium-chain carnitine acyltransferases and acyl-CoA thioesterases in mouse provide complementary systems for transport of β-oxidation products out of peroxisomes

Westin, M. A. K., Hunt, M. C., & Alexson, S. E. H. (2008) · Cellular and Molecular Life Sciences · doi:10.1007/s00018-008-7576-6 · Cited by 82 · see citing works

Evolution of the Tim17 protein family

Žárský, V., & Doležal, P. (2016) · Biology Direct · doi:10.1186/s13062-016-0157-y · Cited by 81 · see citing works

The Mitochondrial Amidoxime-reducing Component (mARC1) Is a Novel Signal-anchored Protein of the Outer Mitochondrial Membrane

Klein, J. M., Busch, J. D., Potting, C., Baker, M. J., Langer, T., & Schwarz, G. (2012) · Journal of Biological Chemistry · doi:10.1074/jbc.m112.419424 · Cited by 79 · see citing works

Peroxisomal protein translocation

Girzalsky, W., Saffian, D., & Erdmann, R. (2010) · Biochimica et Biophysica Acta (BBA) - Molecular Cell Research · doi:10.1016/j.bbamcr.2010.01.002 · Cited by 77 · see citing works

The mammalian molybdenum enzymes of mARC

Ott, G., Havemeyer, A., & Clement, B. (2014) · JBIC Journal of Biological Inorganic Chemistry · doi:10.1007/s00775-014-1216-4 · Cited by 76 · see citing works

Protein transport into peroxisomes: Knowns and unknowns

Francisco, T., Rodrigues, T. A., Dias, A. F., Barros‐Barbosa, A., Bicho, D., & Azevedo, J. E. (2017) · BioEssays · doi:10.1002/bies.201700047 · Cited by 76 · see citing works

Organelle interplay in peroxisomal disorders

Thoms, S., Grønborg, S. W., & Gärtner, J. (2009) · Trends in Molecular Medicine · doi:10.1016/j.molmed.2009.05.002 · Cited by 74 · see citing works

Novel functions of acyl-CoA thioesterases and acyltransferases as auxiliary enzymes in peroxisomal lipid metabolism

Hunt, M. C., & Alexson, S. E. (2008) · Progress in Lipid Research · doi:10.1016/j.plipres.2008.05.001 · Cited by 74 · see citing works

PEX14 is required for microtubule-based peroxisome motility in human cells

Bharti, P., Schliebs, W., Schievelbusch, T., Neuhaus, A., David, C., Kock, K., Herrmann, C., Meyer, H. E., Wiese, S., Warscheid, B., et al. (2011) · Journal of Cell Science · doi:10.1242/jcs.079368 · Cited by 74 · see citing works

The peroxisome as a cell signaling organelle

Tripathi, D. N., & Walker, C. L. (2016) · Current Opinion in Cell Biology · doi:10.1016/j.ceb.2016.02.017 · Cited by 71 · see citing works

The proteome map of spinach leaf peroxisomes indicates partial compartmentalization of phylloquinone (vitamin K1) biosynthesis in plant peroxisomes

Babujee, L., Wurtz, V., Ma, C., Lueder, F., Soni, P., DORSSELAER, A. V., & Reumann, S. (2010) · Journal of Experimental Botany · doi:10.1093/jxb/erq014 · Cited by 70 · see citing works

Endoplasmic Reticulum-Associated Secretory Proteins Sec20p, Sec39p, and Dsl1p Are Involved in Peroxisome Biogenesis

Perry, R. J., Mast, F. D., & Rachubinski, R. A. (2009) · Eukaryotic Cell · doi:10.1128/ec.00024-09 · Cited by 70 · see citing works

Identification of Trans-Golgi Network Proteins in Arabidopsis thaliana Root Tissue

Groen, A. J., Sáncho-Andrés, G., Breckels, L. M., Gatto, L., Aniento, F., & Lilley, K. S. (2013) · Journal of Proteome Research · doi:10.1021/pr4008464 · Cited by 64 · see citing works

The fourth mammalian molybdenum enzyme mARC: current state of research

Havemeyer, A., Lang, J., & Clement, B. (2011) · Drug Metabolism Reviews · doi:10.3109/03602532.2011.608682 · Cited by 67 · see citing works

Organelle proteomics experimental designs and analysis

Gatto, L., Vizcaíno, J. A., Hermjakob, H., Huber, W. K., & Lilley, K. S. (2010) · PROTEOMICS · doi:10.1002/pmic.201000244 · Cited by 64 · see citing works

New insights into the peroxisomal protein inventory: Acyl-CoA oxidases and -dehydrogenases are an ancient feature of peroxisomes

Camões, F., Islinger, M., Guimarães, S., Kilaru, S., Schuster, M., Godinho, L. F., Steinberg, G., & Schrader, M. (2014) · Biochimica et Biophysica Acta (BBA) - Molecular Cell Research · doi:10.1016/j.bbamcr.2014.10.005 · Cited by 63 · see citing works

Advancements in plant proteomics using quantitative mass spectrometry

Oeljeklaus, S., Meyer, H. E., & Warscheid, B. (2008) · Journal of Proteomics · doi:10.1016/j.jprot.2008.11.008 · Cited by 63 · see citing works

The functional readthrough extension of malate dehydrogenase reveals a modification of the genetic code

Hofhuis, J., Schueren, F., Nötzel, C., Lingner, T., Gärtner, J., Jahn, O., & Thoms, S. (2016) · Open Biology · doi:10.1098/rsob.160246 · Cited by 59 · see citing works

Peroxisomal Targeting of PTS2 Pre‐Import Complexes in the Yeast Saccharomyces cerevisiae

Grunau, S., Schliebs, W., Linnepe, R., Neufeld, C., Cizmowski, C., Reinartz, B. S., Meyer, H. E., Warscheid, B., Girzalsky, W., & Erdmann, R. (2009) · Traffic · doi:10.1111/j.1600-0854.2008.00876.x · Cited by 62 · see citing works

Peroxisomal Metabolite and Cofactor Transport in Humans

Chornyi, S., IJlst, L., van Roermund, C. W. T., Wanders, R. J. A., & Waterham, H. R. (2021) · Frontiers in Cell and Developmental Biology · doi:10.3389/fcell.2020.613892 · Cited by 61 · see citing works

Toward a definition of the complete proteome of plant peroxisomes: Where experimental proteomics must be complemented by bioinformatics

Reumann, S. (2011) · PROTEOMICS · doi:10.1002/pmic.201000681 · Cited by 61 · see citing works

70-kDa peroxisomal membrane protein related protein (P70R/ABCD4) localizes to endoplasmic reticulum not peroxisomes, and NH2-terminal hydrophobic property determines the subcellular localization of ABC subfamily D proteins

Kashiwayama, Y., Seki, M., Yasui, A., Murasaki, Y., Morita, M., Yamashita, Y., Sakaguchi, M., Tanaka, Y., & Imanaka, T. (2008) · Experimental Cell Research · doi:10.1016/j.yexcr.2008.10.031 · Cited by 60 · see citing works

The effect of organelle discovery upon sub-cellular protein localisation

Breckels, L. M., Gatto, L., Christoforou, A., Groen, A. J., Lilley, K. S., & Trotter, M. W. B. (2013) · Journal of Proteomics · doi:10.1016/j.jprot.2013.02.019 · Cited by 59 · see citing works

Peroxisome membrane proteins: multiple trafficking routes and multiple functions?

Theodoulou, F. L., Bernhardt, K., Linka, N., & Baker, A. (2013) · Biochemical Journal · doi:10.1042/bj20130078 · Cited by 59 · see citing works

Defining the Plant Peroxisomal Proteome: From Arabidopsis to Rice

Kaur, N., & Hu, J. (2011) · Frontiers in Plant Science · doi:10.3389/fpls.2011.00103 · Cited by 59 · see citing works

Proteomic identification of unique photoreceptor disc components reveals the presence of PRCD, a protein linked to retinal degeneration

Skiba, N., Spencer, W. J., Salinas, R. Y., Lieu, E. C., Thompson, J., & Arshavsky, V. (2013) · Journal of Proteome Research · doi:10.1021/pr4003678 · Cited by 56 · see citing works

The diversity of ACBD proteins – From lipid binding to protein modulators and organelle tethers

Islinger, M., Costello, J. L., Kors, S., Soupène, E., Levine, T. P., Kuypers, F. A., & Schrader, M. (2020) · Biochimica et Biophysica Acta (BBA) - Molecular Cell Research · doi:10.1016/j.bbamcr.2020.118675 · Cited by 55 · see citing works

The Organelle Proteome of the DT40 Lymphocyte Cell Line

Hall, S. L., Hester, S., Griffin, J. L., Lilley, K. S., & Jackson, A. P. (2009) · Molecular & Cellular Proteomics · doi:10.1074/mcp.m800394-mcp200 · Cited by 55 · see citing works

The Involvement of Mitochondrial Amidoxime Reducing Components 1 and 2 and Mitochondrial Cytochrome b5 in N-Reductive Metabolism in Human Cells

Plitzko, B., Ott, G., Reichmann, D., Henderson, C. J., Wolf, C. R., Mendel, R. R., Bittner, F., Clement, B., & Havemeyer, A. (2013) · Journal of Biological Chemistry · doi:10.1074/jbc.m113.474916 · Cited by 51 · see citing works

Peroxisomes from the Heavy Mitochondrial Fraction: Isolation by Zonal Free Flow Electrophoresis and Quantitative Mass Spectrometrical Characterization

Islinger, M., Li, K. W., Loos, M., Liebler, S. S., Angermüller, S., Eckerskorn, C., Weber, G., Abdolzade‐Bavil, A., & Völkl, A. (2009) · Journal of Proteome Research · doi:10.1021/pr9004663 · Cited by 52 · see citing works

Peroxisomal monoubiquitinated PEX5 interacts with the AAA ATPases PEX1 and PEX6 and is unfolded during its dislocation into the cytosol

Pedrosa, A. G., Francisco, T., Bicho, D., Dias, A. F., Barros‐Barbosa, A., Hagmann, V., Dodt, G., Rodrigues, T. A., & Azevedo, J. E. (2018) · Journal of Biological Chemistry · doi:10.1074/jbc.ra118.003669 · Cited by 51 · see citing works

Subcellular Transcriptomics and Proteomics: A Comparative Methods Review

Christopher, J. A., Geladaki, A., Dawson, C. S., Vennard, O. L., & Lilley, K. S. (2021) · Molecular & Cellular Proteomics · doi:10.1016/j.mcpro.2021.100186 · Cited by 48 · see citing works

Learning from Heterogeneous Data Sources: An Application in Spatial Proteomics

Breckels, L. M., Holden, S. B., Wojnar, D., Mulvey, C. M., Christoforou, A., Groen, A. J., Trotter, M. W. B., Kohlbacher, O., Lilley, K. S., & Gatto, L. (2016) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1004920 · Cited by 49 · see citing works

Improved sub‐cellular resolution via simultaneous analysis of organelle proteomics data across varied experimental conditions

Trotter, M. W. B., Sadowski, P. G., Dunkley, T. P. J., Groen, A. J., & Lilley, K. S. (2010) · PROTEOMICS · doi:10.1002/pmic.201000359 · Cited by 48 · see citing works

Mapping the Cargo Protein Membrane Translocation Step into the PEX5 Cycling Pathway

Alencastre, I. S., Rodrigues, T. A., Grou, C. P. O., Fransen, M., Sá-Miranda, C., & Azevedo, J. E. (2009) · Journal of Biological Chemistry · doi:10.1074/jbc.m109.032565 · Cited by 47 · see citing works

A three‐way proteomics strategy allows differential analysis of yeast mitochondrial membrane protein complexes under anaerobic and aerobic conditions

Helbig, A. O., de Groot, M. J. L., van Gestel, R. A., Mohammed, S., de Hulster, E. A. F., Luttik, M. A. H., Daran-Lapujade, P. A. S., Pronk, J. T., Heck, A. J. R., & Slijper, M. (2009) · PROTEOMICS · doi:10.1002/pmic.200800951 · Cited by 45 · see citing works

Identification of Core Components and Transient Interactors of the Peroxisomal Importomer by Dual-Track Stable Isotope Labeling with Amino Acids in Cell Culture Analysis

Oeljeklaus, S., Reinartz, B. S., Wolf, J., Wiese, S., Tonillo, J., Podwojski, K., Kuhlmann, K., Stephan, C., Meyer, H. E., Schliebs, W., et al. (2012) · Journal of Proteome Research · doi:10.1021/pr3000333 · Cited by 45 · see citing works

Proteins and lipids of glycosomal membranes from Leishmania tarentolae and Trypanosoma brucei

Colasante, C., Voncken, F. G. J., Manful, T., Ruppert, T., Tielens, A. G. M., van Hellemond, J. J., & CLAYTON, C. E. (2013) · F1000Research · doi:10.12688/f1000research.2-27.v1 · Cited by 45 · see citing works

Identification of PEX33, a novel component of the peroxisomal docking complex in the filamentous fungus Neurospora crassa

Managadze, D., Würtz, C., Wiese, S., Schneider, M., Girzalsky, W., Meyer, H. E., Erdmann, R., Warscheid, B., & Rottensteiner, H. (2010) · European Journal of Cell Biology · doi:10.1016/j.ejcb.2010.07.003 · Cited by 44 · see citing works

Ubiquitin in the peroxisomal protein import pathway

Francisco, T., Rodrigues, T. A., Pinto, M. P., Carvalho, A. F., Azevedo, J. E., & Grou, C. P. O. (2013) · Biochimie · doi:10.1016/j.biochi.2013.08.003 · Cited by 42 · see citing works

Peroxisomes in mouse and human lung: their involvement in pulmonary lipid metabolism

Karnati, S., & Baumgart‐Vogt, E. (2008) · Histochemistry and Cell Biology · doi:10.1007/s00418-008-0462-3 · Cited by 42 · see citing works

Pex35 is a regulator of peroxisome abundance

Yofe, I., Soliman, K., Chuartzman, S. G., Morgan, B., Weill, U., Yifrach, E., Dick, T. P., Cooper, S. J., Ejsing, C. S., Schuldiner, M., et al. (2017) · Journal of Cell Science · doi:10.1242/jcs.187914 · Cited by 41 · see citing works

Two NAD-linked redox shuttles maintain the peroxisomal redox balance in Saccharomyces cerevisiae

Al-Saryi, N. A., Al-Hejjaj, M. Y., van Roermund, C. W. T., Hulmes, G. E., Ekal, L., Payton, C., Wanders, R. J. A., & Hettema, E. H. (2017) · Scientific Reports · doi:10.1038/s41598-017-11942-2 · Cited by 41 · see citing works

Evolution of organelle-associated protein profiling

Yan, W., Aebersold, R. H., & Raines, E. W. (2008) · Journal of Proteomics · doi:10.1016/j.jprot.2008.11.017 · Cited by 40 · see citing works

Iodination of proteins, proteomes and antibodies with potassium triodide for LA-ICP-MS based proteomic analyses

Waentig, L., Jakubowski, N., Hayen, H., & Roos, P. H. (2011) · Journal of Analytical Atomic Spectrometry · doi:10.1039/c1ja10090d · Cited by 39 · see citing works

TMEM135 regulates primary ciliogenesis through modulation of intracellular cholesterol distribution

Maharjan, Y., Lee, J. N., Kwak, S., Dutta, R. K., Park, C., Choe, S., & Park, R. (2020) · EMBO Reports · doi:10.15252/embr.201948901 · Cited by 39 · see citing works

The Cys-N-degron pathway modulates pexophagy through the N-terminal oxidation and arginylation of ACAD10

Shim, S. M., Choi, H. R., Kwon, S. C., Kim, H. Y., Sung, K. W., Jung, E. J., Mun, S. R., Bae, T. H., Kim, D. H., Son, Y. S., et al. (2022) · Autophagy · doi:10.1080/15548627.2022.2126617 · Cited by 39 · see citing works

TMEM135 links peroxisomes to the regulation of brown fat mitochondrial fission and energy homeostasis

Hu, D., Tan, M., Lu, D., Kleiboeker, B. A., Liu, X., Park, H., Kravitz, A. V., Shoghi, K. I., Tseng, Y., Razani, B., et al. (2023) · Nature Communications · doi:10.1038/s41467-023-41849-8 · Cited by 39 · see citing works

Transient Complex Interactions of Mammalian Peroxisomes Without Exchange of Matrix or Membrane Marker Proteins

Bonekamp, N. A., Sampaio, P., de Abreu, F. V., Lüers, G. H., & Schrader, M. (2012) · Traffic · doi:10.1111/j.1600-0854.2012.01356.x · Cited by 38 · see citing works

Multi-localized Proteins: The Peroxisome-Mitochondria Connection

Costello, J. L., Passmore, J. B., Islinger, M., & Schrader, M. (2018) · Sub-cellular biochemistry/Subcellular biochemistry · doi:10.1007/978-981-13-2233-4_17 · Cited by 38 · see citing works

The peroxisomal protein import machinery displays a preference for monomeric substrates

Freitas, M. O., Francisco, T., Rodrigues, T. A., Lismont, C., Domingues, P. M., Pinto, M. P., Grou, C. P. O., Fransen, M., & Azevedo, J. E. (2015) · Open Biology · doi:10.1098/rsob.140236 · Cited by 37 · see citing works

Identifying novel peroxisome-associated proteins in mouse liver and pig heart by implementing different quantitative proteomics approaches

Singin, Ö. (2024) · heiDOK (Heidelberg University) · doi:10.11588/heidok.00035487

Identification of Potential Peroxisomal Proteins in MousePreprint

Kurochkin, I. V., RIKEN GER Group, Members, G., Konagaya, A., Nagashima, T., & Schönbach, C. (2003) · Genome Research · doi:10.1101/gr.1456303 · Cited by 3 · see citing works

The Proteomics Toolbox Applied to Peroxisomes

Oeljeklaus, S., Schummer, A., & Warscheid, B. (2014) · Springer eBooks · doi:10.1007/978-3-7091-1788-0_12 · Cited by 2 · see citing works

Defining the Mammalian Peroxisomal Proteome

Yifrach, E., Fischer, S., Oeljeklaus, S., Schuldiner, M., Zalckvar, E., & Warscheid, B. (2018) · Sub-cellular biochemistry/Subcellular biochemistry · doi:10.1007/978-981-13-2233-4_2 · Cited by 36 · see citing works

Quantitative proteomic comparison of mouse peroxisomes from liver and kidney

Mi, J., Kirchner, E., & Cristobal, S. (2007) · PROTEOMICS · doi:10.1002/pmic.200600638 · Cited by 46 · see citing works