The DOI matches its Crossref record; 5 of the 5 references it cites were found in a registry or an index.
In Vivo and in Vitro Reconstitution of Atg8 Conjugation Essential for Autophagy
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
EGFP has a relatively neutral pH optimum for fluorescence, and its signal diminishes quickly during live cell imaging due to the acidic environment of the lysosome.
“Along these lines, a caution concerning the use of the EGFP fluorescent protein for microscopy is that this fluorophore has a relatively neutral pH optimum for fluorescence [263], and its signal diminishes quickly during live cell imaging due to the acidic environment of the lysosome.”
From Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition) 1 (2021) · cites this paper as [263]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
A RAPID METHOD OF TOTAL LIPID EXTRACTION AND PURIFICATION
Bligh, E. G., & Dyer, W. J. (1959) · Canadian Journal of Biochemistry and Physiology · doi:10.1139/o59-099 · Cited by 54,751
LC3, a mammalian homologue of yeast Apg8p, is localized in autophagosome membranes after processing.
Kabeya, Y., Mizushima, N., Ueno, T., Yamamoto, A., Kirisako, T., Noda, T., Kominami, E., Ohsumi, Y., & Yoshimori, T. (2000) · The EMBO Journal · doi:10.1093/emboj/19.21.5720 · Cited by 6,605
Self-citationMolecular dissection of autophagy: two ubiquitin-like systems
Ohsumi, Y. (2001) · Nature Reviews Molecular Cell Biology · doi:10.1038/35056522 · Cited by 1,240
Self-citationFormation Process of Autophagosome Is Traced with Apg8/Aut7p in Yeast
Kirisako, T., Baba, M., Ishihara, N., Miyazawa, K., Ohsumi, M., Yoshimori, T., Noda, T., & Ohsumi, Y. (1999) · The Journal of Cell Biology · doi:10.1083/jcb.147.2.435 · Cited by 881
Self-citationHe, H., Dang, Y., Dai, F., Guo, Z., Wu, J., She, X., Pei, Y., Chen, Y., Ling, W., Wu, C., et al. (2003) · Journal of Biological Chemistry · doi:10.1074/jbc.m303800200 · Cited by 273
Flagged first, then by citations
Research works printed but not linked: 32
- Klionsky, 1999, Annu. Rev. Cell Dev. Biol., 15, 1, 10.1146/annurev.cellbio.15.1.1 · DOI
- Huang, 2002, Cell Struct. Funct., 27, 409, 10.1247/csf.27.409 · DOI
- Wang, 2003, Mol. Med., 9, 65, 10.1007/BF03402040 · DOI
- Klionsky, 2003, Dev. Cell, 5, 539, 10.1016/S1534-5807(03)00296-X · DOI
- Mizushima, 2002, Cell Struct. Funct., 27, 421, 10.1247/csf.27.421 · DOI
- Mizushima, 1998, Nature, 395, 395, 10.1038/26506 · DOI
- Ichimura, 2000, Nature, 408, 488, 10.1038/35044114 · DOI
- Tanida, 1999, Mol. Biol. Cell, 10, 1367, 10.1091/mbc.10.5.1367 · DOI
- Shintani, 1999, EMBO J., 18, 5234, 10.1093/emboj/18.19.5234 · DOI · Paper page
- Kuma, 2002, J. Biol. Chem., 277, 18619, 10.1074/jbc.M111889200 · DOI
- Lang, 1998, EMBO J., 17, 3597, 10.1093/emboj/17.13.3597 · DOI
- Kirisako, 2000, J. Cell Biol., 151, 263, 10.1083/jcb.151.2.263 · DOI
- Sagiv, 2000, EMBO J., 19, 1494, 10.1093/emboj/19.7.1494 · DOI
- Wang, 1999, Nature, 397, 69, 10.1038/16264 · DOI
- Tanida, 2003, Biochem. Biophys. Res. Commun., 300, 637, 10.1016/S0006-291X(02)02907-8 · DOI
- Hemelaar, 2003, J. Biol. Chem., 278, 51841, 10.1074/jbc.M308762200 · DOI · Paper page
- Abeliovich, 2000, J. Cell Biol., 151, 1025, 10.1083/jcb.151.5.1025 · DOI
- Saha, 1996, Biosci. Biotechnol. Biochem., 60, 111, 10.1271/bbb.60.111 · DOI
- Guzman, 1995, J. Bacteriol., 177, 4121, 10.1128/JB.177.14.4121-4130.1995 · DOI
- Bligh, 1959, Can. J. Med. Sci., 37, 911
- Bartlett, 1958, Ann. N. Y. Acad. Sci., 75, 110, 10.1111/j.1749-6632.1958.tb36855.x · DOI
- Takahashi, 2001, J. Biol. Chem., 276, 48973, 10.1074/jbc.M109295200 · DOI
- Cullis, 1979, Biochim. Biophys. Acta, 559, 399, 10.1016/0304-4157(79)90012-1 · DOI
- Tuller, 1999, Yeast, 15, 1555, 10.1002/(SICI)1097-0061(199910)15:14<1555::AID-YEA479>3.0.CO;2-Z · DOI
- Verkleij, 2000, J. Membr. Biol., 178, 1, 10.1007/s002320010009 · DOI
- Komatsu, 2001, J. Biol. Chem., 276, 9846, 10.1074/jbc.M007737200 · DOI
- Paz, 2000, J. Biol. Chem., 275, 25445, 10.1074/jbc.C000307200 · DOI
- Stangler, 2002, J. Biol. Chem., 277, 13363, 10.1074/jbc.C200050200 · DOI
- Sugawara, 2004, Genes Cells, 9, 611, 10.1111/j.1356-9597.2004.00750.x · DOI · Paper page
- Coyle, 2002, Neuron, 33, 63, 10.1016/S0896-6273(01)00558-X · DOI
- Legesse-Miller, 2000, J. Biol. Chem., 275, 32966, 10.1074/jbc.M000917200 · DOI
- Suzuki, 2001, EMBO J., 20, 5971, 10.1093/emboj/20.21.5971 · DOI
Cited by
Sorted by citations
Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition) 1
Klionsky, D. J., Abdel-Aziz, A. K., Abdelfatah, S., Abdellatif, M., Abdoli, A., Abel, S., Abeliovich, H., Abildgaard, M. H., Abudu, Y. P., Acevedo-Arozena, A., et al. (2021) · Autophagy · doi:10.1080/15548627.2020.1797280 · Cited by 2,897
Self-citationHow to Interpret LC3 Immunoblotting
Mizushima, N., & Yoshimori, T. (2007) · Autophagy · doi:10.4161/auto.4600 · Cited by 2,595
The Atg12-Atg5 Conjugate Has a Novel E3-like Activity for Protein Lipidation in Autophagy
Hanada, T., Noda, N. N., Satomi, Y., Ichimura, Y., Fujioka, Y., Takao, T., Inagaki, F., & Ohsumi, Y. (2007) · Journal of Biological Chemistry · doi:10.1074/jbc.c700195200 · Cited by 1,123
Self-citationAtg8: an autophagy-related ubiquitin-like protein family.
Shpilka, T., Weidberg, H., Pietrokovski, S., & Elazar, Z. (2011) · Genome biology · doi:10.1186/gb-2011-12-7-226 · Cited by 543
“A conformational change was also reported in an in vitro reconstitution assay of yeast Atg8, in which accessibility of the amino terminus to antibody increased on conjugation of Atg8 to phosphatidylethanolamine (PE)-containing liposomes [19].”
BackgroundCeramide targets autophagosomes to mitochondria and induces lethal mitophagy
Sentelle, R. D., Senkal, C. E., Jiang, W., Ponnusamy, S., Gencer, S., Panneer Selvam, S., Ramshesh, V. K., Peterson, Y. K., Lemasters, J. J., Szulc, Z. M., et al. (2012) · Nature Chemical Biology · doi:10.1038/nchembio.1059 · Cited by 539
Biogenesis and Cargo Selectivity of Autophagosomes
Weidberg, H., Shvets, E., & Elazar, Z. (2011) · Annual Review of Biochemistry · doi:10.1146/annurev-biochem-052709-094552 · Cited by 466
Metadata
- Authors
- Ichimura, Y., Imamura, Y., Emoto, K., Umeda, M., Noda, T., & Ohsumi, Y.
- Venue
- Journal of Biological Chemistry
- Publisher
- Elsevier BV
- Published
- 2004-09
- Volume
- 279
- Issue
- 39
- Pages
- 40584-40592
- ISSN
- 0021-9258
- Cited by
- 193
- References
- 5
- Language
- en
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review