The DOI matches its Crossref record; 4 of the 4 references it cites were found in a registry or an index.
Structural basis of sterol binding and transport by a yeast StARkin domain
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
GRAMD1s extract accessible plasma membrane cholesterol for transport to the endoplasmic reticulum via the StART-like domain, which can directly capture and transport sterol across the cytoplasm.
“GRAMD1s then extract accessible PM cholesterol for transport to the ER via the StART‐like domain, which can directly capture and transport sterol across the cytoplasm (Gatta et al, 2018; Horenkamp et al, 2018; Jentsch et al, 2018; Sandhu et al, 2018; Tong et al, 2018; Khelashvili et al, 2019; Naito et al, 2019).”
From Molecular basis of accessible plasma membrane cholesterol recognition by the GRAM domain of GRAMD1b (2021) · cites this paper as Jentsch et al, 2018
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Towards automated crystallographic structure refinement with phenix.refine
Afonine, P. V., Grosse-Kunstleve, R. W., Echols, N., Headd, J. J., Moriarty, N. W., Mustyakimov, M., Terwilliger, T. C., Urzhumtsev, A., Zwart, P. H., & Adams, P. D. (2012) · Acta Crystallographica Section D Biological Crystallography · doi:10.1107/s0907444912001308 · Cited by 5,511
A Century of Cholesterol and Coronaries: From Plaques to Genes to Statins
Goldstein, J. L., & Brown, M. S. (2015) · Cell · doi:10.1016/j.cell.2015.01.036 · Cited by 1,233
Lipid landscapes and pipelines in membrane homeostasis
Holthuis, J. C. M., & Menon, A. K. (2014) · Nature · doi:10.1038/nature13474 · Cited by 901
Self-citationRomanowski, M. J., Soccio, R. E., Breslow, J. L., & Burley, S. K. (2002) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.052140699 · Cited by 162
Flagged first, then by citations
Research works printed but not linked: 44
- Maxfield, 2010, Cholesterol, the central lipid of mammalian cells, Curr. Opin. Cell Biol, 22, 422, 10.1016/j.ceb.2010.05.004 · DOI · Paper page
- Iaea, 2015, Cholesterol trafficking and distribution, Essays Biochem, 57, 43, 10.1042/bse0570043 · DOI
- Maxfield, 2006, Intracellular sterol transport and distribution, Curr. Opin. Cell Biol, 18, 379, 10.1016/j.ceb.2006.06.012 · DOI
- McLean, 1981, Mechanism of cholesterol and phosphatidylcholine exchange or transfer between unilamellar vesicles, Biochemistry, 20, 2893, 10.1021/bi00513a028 · DOI
- Kaplan, 1985, Transport of cholesterol from the endoplasmic reticulum to the plasma membrane, J. Cell Biol, 101, 446, 10.1083/jcb.101.2.446 · DOI
- Baumann, 2005, Transport of newly synthesized sterol to the sterol-enriched plasma membrane occurs via nonvesicular equilibration, Biochemistry, 44, 5816, 10.1021/bi048296z · DOI
- Dittman, 2017, Speed limits for nonvesicular intracellular sterol transport, Trends Biochem. Sci, 42, 90, 10.1016/j.tibs.2016.11.004 · DOI
- Mesmin, 2011, STARD4 abundance regulates sterol transport and sensing, Mol. Biol. Cell, 22, 4004, 10.1091/mbc.e11-04-0372 · DOI
- Wong, 2016, Lipid transfer proteins do their thing anchored at membrane contact sites. But what is their thing?, Biochem. Soc. Trans, 44, 517, 10.1042/BST20150275 · DOI
- Alpy, 2005, Give lipids a START: the StAR-related lipid transfer (START) domain in mammals, J. Cell Sci, 118, 2791, 10.1242/jcs.02485 · DOI
- Beh, 2012, A detour for yeast oxysterol binding proteins, J. Biol. Chem, 287, 11481, 10.1074/jbc.R111.338400 · DOI
- Raychaudhuri, 2010, The diverse functions of oxysterol-binding proteins, Annu. Rev. Cell Dev. Biol, 26, 157, 10.1146/annurev.cellbio.042308.113334 · DOI
- Iyer, 2001, Adaptations of the helix-grip fold for ligand binding and catalysis in the START domain superfamily, Proteins, 43, 134, 10.1002/1097-0134(20010501)43:2<134::AID-PROT1025>3.0.CO;2-I · DOI
- Elbaz-Alon, 2015, Lam6 regulates the extent of contacts between organelles, Cell Rep, 12, 7, 10.1016/j.celrep.2015.06.022 · DOI
- Gatta, 2015, A new family of StART domain proteins at membrane contact sites has a role in ER-PM sterol transport, Elife, 4, 10.7554/eLife.07253 · DOI · Paper page
- Murley, 2015, Ltc1 is an ER-localized sterol transporter and a component of ER-mitochondria and ER-vacuole contacts, J. Cell Biol, 209, 539, 10.1083/jcb.201502033 · DOI
- Sullivan, 2009, Tritium suicide selection identifies proteins involved in the uptake and intracellular transport of sterols in Saccharomyces cerevisiae, Eukaryot. Cell, 8, 161, 10.1128/EC.00135-08 · DOI
- Im, 2005, Structural mechanism for sterol sensing and transport by OSBP-related proteins, Nature, 437, 154, 10.1038/nature03923 · DOI
- Barbar, 2009, Toward the NMR structure of StAR, Mol. Cell. Endocrinol, 300, 89, 10.1016/j.mce.2008.12.007 · DOI
- Létourneau, 2016, STARD6 on steroids: solution structure, multiple timescale backbone dynamics and ligand binding mechanism, Sci. Rep, 6, 10.1038/srep28486 · DOI
- Létourneau, 2013, Thermodynamic and solution state NMR characterization of the binding of secondary and conjugated bile acids to STARD5, Biochim. Biophys. Acta, 1831, 1589, 10.1016/j.bbalip.2013.07.005 · DOI
- John, 2002, Rapid transbilayer movement of the fluorescent sterol dehydroergosterol in lipid membranes, Biophys. J, 83, 1525, 10.1016/S0006-3495(02)73922-2 · DOI
- Iaea, 2015, STARD4 membrane interactions and sterol binding, Biochemistry, 54, 4623, 10.1021/acs.biochem.5b00618 · DOI
- Tsujishita, 2000, Structure and lipid transport mechanism of a StAR-related domain, Nat. Struct. Biol, 7, 408, 10.1038/75192 · DOI
- Murcia, 2006, Modeling the structure of the StART domains of MLN64 and StAR proteins in complex with cholesterol, J. Lipid Res, 47, 2614, 10.1194/jlr.M600232-JLR200 · DOI · Paper page
- Ashkenazy, 2016, ConSurf 2016: an improved methodology to estimate and visualize evolutionary conservation in macromolecules, Nucleic Acids Res, 44, W344, 10.1093/nar/gkw408 · DOI · Paper page
- Landau, 2005, ConSurf 2005: the projection of evolutionary conservation scores of residues on protein structures, Nucleic Acids Res, 33, W299, 10.1093/nar/gki370 · DOI
- Khafif, 2014, Identification and phylogenetic analyses of VASt, an uncharacterized protein domain associated with lipid-binding domains in eukaryotes, BMC Bioinformatics, 15, 222, 10.1186/1471-2105-15-222 · DOI
- Tong, 2018, Structural basis of sterol recognition and nonvesicular transport by lipid transfer proteins anchored at membrane contact sites, Proc. Natl. Acad. Sci. U.S.A, 115, E856, 10.1073/pnas.1719709115 · DOI
- Thorsell, 2011, Comparative structural analysis of lipid binding START domains, PLoS One, 6, 10.1371/journal.pone.0019521 · DOI
- Gatta, 2018, Structural insights into a StART-like domain in Lam4 and its interaction with sterol ligands, Biochem. Biophys. Res. Commun, 495, 2270, 10.1016/j.bbrc.2017.12.109 · DOI · Paper page
- Reinisch, 2016, SMP-domain proteins at membrane contact sites: structure and function, Biochim. Biophys. Acta, 1861, 924, 10.1016/j.bbalip.2015.12.003 · DOI
- Saheki, 2016, Control of plasma membrane lipid homeostasis by the extended synaptotagmins, Nat. Cell Biol, 18, 504, 10.1038/ncb3339 · DOI
- Delaglio, 1995, NMRPipe: a multidimensional spectral processing system based on UNIX pipes, J. Biomol. NMR, 6, 277, 10.1007/BF00197809 · DOI
- Johnson, 1994, NMR View: a computer program for the visualization and analysis of NMR data, J. Biomol. NMR, 4, 603, 10.1007/BF00404272 · DOI
- Otwinowski, 1997, Processing of X-ray diffraction data collected in oscillation mode, Methods Enzymol, 276, 307, 10.1016/S0076-6879(97)76066-X · DOI · Paper page
- Pape, 2004, HKL2MAP: a graphical user interface for macromolecular phasing with SHELX programs, J. Appl. Crystallogr, 37, 843, 10.1107/S0021889804018047 · DOI
- Terwilliger, 2008, Iterative model building, structure refinement and density modification with the PHENIX AutoBuild wizard, Acta Crystallogr. D Biol. Crystallogr, 64, 61, 10.1107/S090744490705024X · DOI · Paper page
- Adams, 2002, PHENIX: building new software for automated crystallographic structure determination, Acta Crystallogr. D Biol. Crystallogr, 58, 1948, 10.1107/S0907444902016657 · DOI · Paper page
- Emsley, 2004, Coot: model-building tools for molecular graphics, Acta Crystallogr. D Biol. Crystallogr, 60, 2126, 10.1107/S0907444904019158 · DOI · Paper page
- Emsley, 2010, Features and development of Coot, Acta Crystallogr. D Biol. Crystallogr, 66, 486, 10.1107/S0907444910007493 · DOI · Paper page
- McCoy, 2007, Phaser crystallographic software, J. Appl. Crystallogr, 40, 658, 10.1107/S0021889807021206 · DOI · Paper page
- Rouser, 1970, Two dimensional then layer chromatographic separation of polar lipids and determination of phospholipids by phosphorus analysis of spots, Lipids, 5, 494, 10.1007/BF02531316 · DOI
- Viklund, 2008, OCTOPUS: improving topology prediction by two-track ANN-based preference scores and an extended topological grammar, Bioinformatics, 24, 1662, 10.1093/bioinformatics/btn221 · DOI
Cited by
Sorted by citations
Sandhu, J., Li, S., Fairall, L., Pfisterer, S. G., Gurnett, J. E., Xiao, X., Weston, T. A., Vashi, D., Ferrari, A., Orozco, J. L., et al. (2018) · Cell · doi:10.1016/j.cell.2018.08.033 · Cited by 287
Molecular basis of accessible plasma membrane cholesterol recognition by the GRAM domain of GRAMD1b
Ercan, B., Naito, T., Koh, D. H. Z., Dharmawan, D., & Saheki, Y. (2021) · The EMBO Journal · doi:10.15252/embj.2020106524 · Cited by 132
Metadata
- Authors
- Jentsch, J.-A., Kiburu, I., Pandey, K., Timme, M., Ramlall, T., Levkau, B., Wu, J., Eliezer, D., Boudker, O., & Menon, A. K.
- Venue
- Journal of Biological Chemistry
- Publisher
- Elsevier BV
- Published
- 2018-04
- Volume
- 293
- Issue
- 15
- Pages
- 5522-5531
- ISSN
- 0021-9258
- Cited by
- 58
- References
- 4
- Language
- en
- Funders
- Qatar National Research Fund (QNRF) (NPRP 7–082-1–014)
- HHS | NIH | National Institute of General Medical Sciences (NIGMS) (GM117518)
- HHS | NIH | National Institute on Aging (NIA) (AG019391)
- HHS | NIH | National Institute of Neurological Disorders and Stroke (NINDS) (NS085318)
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review