The DOI matches its Crossref record; 4 of the 4 references it cites were found in a registry or an index.
A Face in the Crowd: Recognizing Peptides Through Database Search
Open accessAbstract
Peptide identification via tandem mass spectrometry sequence database searching is a key method in the array of tools available to the proteomics researcher. The ability to rapidly and sensitively acquire tandem mass spectrometry data and perform peptide and protein identifications has become a commonly used proteomics analysis technique because of advances in both instrumentation and software. Although many different tandem mass spectrometry database search tools are currently available from both academic and commercial sources, these algorithms share similar core elements while maintaining distinctive features. This review revisits the mechanism of sequence database searching and discusses how various parameter settings impact the underlying search.
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Cites
Elias, J. E., & Gygi, S. P. (2007) · Nature Methods · doi:10.1038/nmeth1019 · Cited by 3,925
Semi-supervised learning for peptide identification from shotgun proteomics datasets
Käll, L., Canterbury, J. D., Weston, J., Noble, W. S., & MacCoss, M. J. (2007) · Nature Methods · doi:10.1038/nmeth1113 · Cited by 2,424
Beausoleil, S. A., Villén, J., Gerber, S. A., Rush, J., & Gygi, S. P. (2006) · Nature Biotechnology · doi:10.1038/nbt1240 · Cited by 1,577
On the Proper Use of Mass Accuracy in Proteomics
Zubarev, R., & Mann, M. (2007) · Molecular & Cellular Proteomics · doi:10.1074/mcp.m600380-mcp200 · Cited by 165
Cited by
Deutsch, E. W., Mendoza, L., Shteynberg, D., Slagel, J., Sun, Z., & Moritz, R. L. (2015) · PROTEOMICS – Clinical Applications · doi:10.1002/prca.201400164 · Cited by 342
Gillet, L. C., Leitner, A., & Aebersold, R. (2016) · Annual Review of Analytical Chemistry · doi:10.1146/annurev-anchem-071015-041535 · Cited by 323
JUMP: a tag-based database search tool for peptide identification with high sensitivity and accuracy
Wang, X., Li, Y., Wu, Z., Wang, H., Tan, H., & Peng, J. (2014) · Molecular & Cellular Proteomics · doi:10.1074/mcp.o114.039586 · Cited by 194
Di Domenico, F., Barone, E., Perluigi, M., & Butterfield, D. A. (2017) · Antioxidants & Redox Signaling · doi:10.1089/ars.2016.6759 · Cited by 114
Applications and challenges of forensic proteomics
Merkley, E. D., Wunschel, D. S., Wahl, K. L., & Jarman, K. H. (2019) · Forensic Science International · doi:10.1016/j.forsciint.2019.01.022 · Cited by 64
Metadata
- Authors
- Eng, J. K., Searle, B. C., Clauser, K. R., & Tabb, D. L.
- Venue
- Molecular & Cellular Proteomics
- Publisher
- Elsevier BV
- Published
- 2011-11
- Volume
- 10
- Issue
- 11
- Pages
- R111.009522
- ISSN
- 1535-9476 (ISSN-L)
- OpenAlex
- W2008117982
- Cited by
- 187
- References
- 4
- FWCI
- 4.92
- Type
- journal article
- Language
- en
- Open access
- hybrid
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