Cited by 143Marine Invertebrate Physiology and EcologyMarine Sponges and Natural ProductsProtist diversity and phylogeny

The DOI matches its Crossref record; 114 of the 125 references it cites were found in a registry or an index.

Phylogeny and Evolution of Glass Sponges (Porifera, Hexactinellida)

Dohrmann, Martin, Janussen, Dorte, Reitner, Joachim, Collins, Allen G., Wörheide, Gert·2008·Systematic Biology

DOI 10.1080/10635150802161088

Open this paper in CoChat — free account

Abstract

Reconstructing the phylogeny of sponges (Porifera) is one of the remaining challenges to resolve the metazoan Tree of Life and is a prerequisite for understanding early animal evolution. Molecular phylogenetic analyses for two of the three extant classes of the phylum, Demospongiae and Calcarea, are largely incongruent with traditional classifications, most likely because of a paucity of informative morphological characters and high levels of homoplasy. For the third class, Hexactinellida (glass sponges)--predominantly deep-sea inhabitants with unusual morphology and biology--we present the first molecular phylogeny, along with a cladistic analysis of morphological characters. We collected 18S, 28S, and mitochondrial 16S ribosomal DNA sequences of 34 glass sponge species from 27 genera, 9 families, and 3 orders and conducted partitioned Bayesian analyses using RNA secondary structure-specific substitution models (paired-sites models) for stem regions. Bayes factor comparisons of different paired-sites models against each other and conventional (independent-sites) models revealed a significantly better fit of the former but, contrary to previous predictions, the least parameter-rich of the tested paired-sites models provided the best fit to our data. In contrast to Demospongiae and Calcarea, our rDNA phylogeny agrees well with the traditional classification and a previously proposed phylogenetic system, which we ascribe to a more informative morphology in Hexactinellida. We find high support for a close relationship of glass sponges and Demospongiae sensu stricto, though the latter may be paraphyletic with respect to Hexactinellida. Homoscleromorpha appears to be the sister group of Calcarea. Contrary to most previous findings from rDNA, we recover Porifera as monophyletic, although support for this clade is low under paired-sites models.

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

Integrity signals

Registry

Crossref · 10.1080/10635150802161088

Cites

114 of 114 references verified0 citation errors · 0 not checkable

Statistics

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Basic local alignment search tool
Altschul, S. F., Gish, W., Miller, W., Myers, E. W., & Lipman, D. J. (1990) · Journal of Molecular Biology · doi:10.1006/jmbi.1990.9999 · Cited by 98,669
A new look at the statistical model identification
Akaike, H. (1974) · IEEE Transactions on Automatic Control · doi:10.1109/tac.1974.1100705 · Cited by 51,879
CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP
Felsenstein, J. (1985) · Evolution · doi:10.1111/j.1558-5646.1985.tb00420.x · Cited by 44,735
The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
Thompson, J. (1997) · Nucleic Acids Research · doi:10.1093/nar/25.24.4876 · Cited by 38,685
MrBayes 3: Bayesian phylogenetic inference under mixed models
Ronquist, F., & Huelsenbeck, J. P. (2003) · Bioinformatics · doi:10.1093/bioinformatics/btg180 · Cited by 29,194
MODELTEST: testing the model of DNA substitution.
Posada, D., & Crandall, K. A. (1998) · Bioinformatics · doi:10.1093/bioinformatics/14.9.817 · Cited by 19,820
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
Stamatakis, A. (2006) · Bioinformatics · doi:10.1093/bioinformatics/btl446 · Cited by 15,582
PAUP^* : Phylogenetic Analysis Using Parsimony (and other methods) 4.0b8
Swofford, D. L. (2001) · Cited by 12,789
Bayes factors
Kass, R. E., & Raftery, A. E. (1995) · Journal of the American Statistical Association · doi:10.1080/01621459.1995.10476572 · Cited by 12,558
Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees.
Tamura, K., & Nei, M. (1993) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a040023 · Cited by 11,267
Dating of the human–ape splitting by a molecular clock of mitochondrial DNA.
Hasegawa, M., Kishino, H., & Yano, T.-A. (1985) · Journal of Molecular Evolution · doi:10.1007/bf02101694 · Cited by 8,687
PAUP * [Phylogenetic Analysis Using Parsimony (and Other Methods)]
Cummings, M. P. (2004) · Wiley eBooks · doi:10.1002/0471650129.dob0522 · Cited by 5,252
Phylogenetic Systematics
Hennig, W. (1965) · Annual Review of Entomology · doi:10.1146/annurev.en.10.010165.000525 · Cited by 4,248
BRANCH SUPPORT AND TREE STABILITY
Bremer, K. (1994) · Cladistics · doi:10.1111/j.1096-0031.1994.tb00179.x · Cited by 2,857
SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny
Galtier, N., Gouy, M., & Gautier, C. (1996) · Computer applications in the biosciences · doi:10.1093/bioinformatics/12.6.543 · Cited by 2,264
Bayesian Phylogenetic Analysis of Combined Data
Nylander, J. A. A., Ronquist, F., Huelsenbeck, J. P., & Nieves‐Aldrey, J. L. (2004) · Systematic Biology · doi:10.1080/10635150490264699 · Cited by 1,845
Approximate Bayesian Inference with the Weighted Likelihood Bootstrap
Newton, M. A., & Raftery, A. E. (1994) · Journal of the Royal Statistical Society Series B (Statistical Methodology) · doi:10.1111/j.2517-6161.1994.tb01956.x · Cited by 1,491
A new method for calculating evolutionary substitution rates
Lanave, C., Preparata, G., Saccone, C., & Serio, G. (1984) · Journal of Molecular Evolution · doi:10.1007/bf02101990 · Cited by 1,417
Systema Porifera. A Guide to the Classification of Sponges
Hooper, J. N. A., & van Soest, R. W. M. (2002) · Springer eBooks · doi:10.1007/978-1-4615-0747-5_1 · Cited by 1,191
Skeleton of Euplectella sp.: Structural Hierarchy from the Nanoscale to the Macroscale
Aizenberg, J., Weaver, J. C., Thanawala, M. S., Sundar, V. C., Morse, D. E., & Fratzl, P. (2005) · Science · doi:10.1126/science.1112255 · Cited by 1,151
Parallel Metropolis coupled Markov chain Monte Carlo for Bayesian phylogenetic inference
Altekar, G., Dwarkadas, S., Huelsenbeck, J. P., & Ronquist, F. (2004) · Bioinformatics · doi:10.1093/bioinformatics/btg427 · Cited by 1,149
Bayesian Selection of Continuous-Time Markov Chain Evolutionary Models
Suchard, M. A., Weiss, R. E., & Sinsheimer, J. S. (2001) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a003872 · Cited by 791
Partitioned Bayesian Analyses, Partition Choice, and the Phylogenetic Relationships of Scincid Lizards
Brandley, M. C., Schmitz, A., & Reeder, T. W. (2005) · Systematic Biology · doi:10.1080/10635150590946808 · Cited by 689
Maximum likelihood estimation of the heterogeneity of substitution rate among nucleotide sites.
Gu, X., Fu, Y. X., & Li, W. (1995) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a040235 · Cited by 623
The New View of Animal Phylogeny
Halanych, K. M. (2004) · Annual Review of Ecology, Evolution, and Systematics · doi:10.1146/annurev.ecolsys.35.112202.130124 · Cited by 489
Maximum Likelihood Estimation
Scholz, F. W. (2005) · Encyclopedia of Statistical Sciences · doi:10.1002/0471667196.ess1571.pub2 · Cited by 452
Wissenschaftliche Ergebnisse der deutschen Tiefsee-Expedition auf dem Dampfer “Valdivia”, 1898–1899
(1908) · Nature · doi:10.1038/078267a0 · Cited by 417
Evaluating hypotheses of basal animal phylogeny using complete sequences of large and small subunit rRNA
Medina, M., Collins, A. G., Silberman, J. D., & Sogin, M. L. (2001) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.171316998 · Cited by 395
Self-citation
Origin of the Eumetazoa: Testing ecological predictions of molecular clocks against the Proterozoic fossil record
Peterson, K. J., & Butterfield, N. J. (2005) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0503660102 · Cited by 361
Phylogeny of Medusozoa and the evolution of cnidarian life cycles
Collins, A. G. (2002) · Journal of Evolutionary Biology · doi:10.1046/j.1420-9101.2002.00403.x · Cited by 355
Self-citation
The Importance of Data Partitioning and the Utility of Bayes Factors in Bayesian Phylogenetics
Brown, J. M., & Lemmon, A. R. (2007) · Systematic Biology · doi:10.1080/10635150701546249 · Cited by 337
Report on the Scientific Results of the Voyage of H.M.S. Challenger During the Years 1873-76
Great Britain. Challenger Office, Thomson, C. W., Murray, J., Nares, G. S., & Thomson, F. T. (2010) · Medical Entomology and Zoology · Cited by 330
Polytomies and Bayesian Phylogenetic Inference
Lewis, P. O., Holder, M. T., & Holsinger, K. E. (2005) · Systematic Biology · doi:10.1080/10635150590924208 · Cited by 316
Phylogenetic models of rate heterogeneity: A high performance computing perspective
Stamatakis, A. (2006) · Cited by 303
Phylogenetic models of rate heterogeneity: a high performance computing perspective
Stamatakis, A. (2006) · IEEE International Parallel and Distributed Processing Symposium (IPDPS) · doi:10.1109/ipdps.2006.1639535 · Cited by 292
Fibre-optical features of a glass sponge
Sundar, V. C., Yablon, A. D., Grazul, J. L., Ilan, M., & Aizenberg, J. (2003) · Nature · doi:10.1038/424899a · Cited by 277
Sponge paraphyly and the origin of Metazoa
Borchiellini, C., Manuel, M., Alivon, E., Boury-Esnault, N., Vacelet, J., & Le Parco, Y. (2001) · Journal of Evolutionary Biology · doi:10.1046/j.1420-9101.2001.00244.x · Cited by 275
Decline in Mesozoic reef-building sponges explained by silicon limitation
Maldonado, M., Carmona, M. C., Uriz, M. J., & Cruzado, A. (1999) · Nature · doi:10.1038/44560 · Cited by 268
Use of Chelex to improve the PCR signal from a small number of cells
Singer–Sam, J. (1989) · Medical Entomology and Zoology · Cited by 266
The European ribosomal RNA database
Wuyts, J. (2003) · Nucleic Acids Research · doi:10.1093/nar/gkh065 · Cited by 263
Long expected sponges from the Neoproterozoic Ediacara fauna of South Australia
Gehling, J. G., & Rigby, J. K. (1996) · Journal of Paleontology · doi:10.1017/s0022336000023283 · Cited by 256
Evaluating multiple alternative hypotheses for the origin of Bilateria: An analysis of 18S rRNA molecular evidence
Collins, A. G. (1998) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.95.26.15458 · Cited by 252
Self-citation
Molecular phylogeny of Demospongiae: implications for classification and scenarios of character evolution
Borchiellini, C., Chombard, C., Manuel, M., Alivon, E., Vacelet, J., & Boury‐Esnault, N. (2004) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2004.02.021 · Cited by 251
Phylogeny of Choanozoa, Apusozoa, and Other Protozoa and Early Eukaryote Megaevolution
Cavalier‐Smith, T., & Chao, E. E. Y. (2003) · Journal of Molecular Evolution · doi:10.1007/s00239-002-2424-z · Cited by 248
PRAP—computation of Bremer support for large data sets
Müller, K. (2004) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2003.12.006 · Cited by 247
Ribosomal RNA secondary structure: compensatory mutations and implications for phylogenetic analysis.
Dixon, M. T., & Hillis, D. M. (1993) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a039998 · Cited by 245
Paired sequence difference in ribosomal RNAs: evolutionary and phylogenetic implications.
(1988) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a040480 · Cited by 234
Branch-length prior influences Bayesian posterior probability of phylogeny.
Yang, Z., & Rannala, B. (2005) · Systematic Biology · doi:10.1080/10635150590945313 · Cited by 228
An inexpensive alternative to glassmilk for DNA purification
Boyle, J. S., & Lew, A. M. (1995) · Trends in Genetics · doi:10.1016/s0168-9525(00)88977-5 · Cited by 227
Poriferan paraphyly and its implications for Precambrian palaeobiology
Sperling, E. A., Pisani, D., & Peterson, K. J. (2007) · Geological Society, London, Special Publications · doi:10.1144/sp286.25 · Cited by 206 · cited 1×
“, 2003; Ereskovsky and Tokina, 2007), leading to the hypothesis that they might be more closely related to Eumetazoa than to other sponges (Boury-Esnault et al., 2003; Sperling et al., 2007).”
Background
The Biology of Glass Sponges
Leys, S. P., Mackie, G. O., & Reiswig, H. M. (2007) · Advances in marine biology · doi:10.1016/s0065-2881(06)52001-2 · Cited by 191
RNA Sequence Evolution With Secondary Structure Constraints: Comparison of Substitution Rate Models Using Maximum-Likelihood Methods
Savill, N. J., Hoyle, D. C., & Higgs, P. G. (2001) · Genetics · doi:10.1093/genetics/157.1.399 · Cited by 180
An evaluation of support for order-level monophyly and interrelationships within the class Demospongiae using partial data from the large subunit rDNA and cytochrome oxidase subunit I
Nichols, S. (2005) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2004.08.019 · Cited by 179
Consideration of RNA Secondary Structure Significantly Improves Likelihood-Based Estimates of Phylogeny: Examples from the Bilateria
Telford, M. J. (2005) · Molecular Biology and Evolution · doi:10.1093/molbev/msi099 · Cited by 175
The origin of Jurassic reefs: Current research developments and results
Leinfelder, R., Krautter, M., Laternser, R., Nose, M., Schmid, D. U., Schweigert, G., Werner, W., Keupp, H., Brugger, H., Herrmann, R., et al. (1994) · Facies · doi:10.1007/bf02536932 · Cited by 171
Accurate Branch Length Estimation in Partitioned Bayesian Analyses Requires Accommodation of Among-Partition Rate Variation and Attention to Branch Length Priors
Marshall, D. C., Simon, C., & Buckley, T. R. (2006) · Systematic Biology · doi:10.1080/10635150601087641 · Cited by 170
Dense aggregations of a hexactinellid sponge, Pheronema carpenteri, in the Porcupine Seabight (northeast Atlantic Ocean), and possible causes
Rice, A. L., Thurston, M. H., & New, A. L. (1990) · Progress In Oceanography · doi:10.1016/0079-6611(90)90029-2 · Cited by 164
Phylogeny and Evolution of Calcareous Sponges: Monophyly of Calcinea and Calcaronea, High Level of Morphological Homoplasy, and the Primitive Nature of Axial Symmetry
Manuel, M., Borchiellini, C., Alivon, E., Parco, Y. L., Vacelet, J., & Boury‐Esnault, N. (2003) · Systematic Biology · doi:10.1080/10635150309322 · Cited by 158
RNA-based phylogenetic methods: application to mammalian mitochondrial RNA sequences
Hudelot, C., Gowri-Shankar, V., Jow, H., Rattray, M., & Higgs, P. G. (2003) · Molecular Phylogenetics and Evolution · doi:10.1016/s1055-7903(03)00061-7 · Cited by 156
Larval development in the Homoscleromorpha (Porifera, Demospongiae)
Boury‐Esnault, N., Ereskovsky, A. V., Bézac, C., & Tokina, D. B. (2003) · Invertebrate Biology · doi:10.1111/j.1744-7410.2003.tb00084.x · Cited by 156
Oldest entirely preserved sponges and other fossils from the Lowermost Cambrian and a new facies reconstruction of the Yangtze platform (China)
Steiner, M., Mehl, D., Joachim Reitner, A., & Erdtmann, B. D. (1993) · Geo-Leo e-docs (Deutsche Initiative für Netzwerkinformation) · doi:10.23689/fidgeo-774 · Cited by 153
Multicellular Animals: A new Approach to the Phylogenetic Order in Nature Volume 1
Ax, P. (1996) · doi:10.1007/978-3-642-80114-3 · Cited by 147
Studies on hexactinellid sponges. I. Histology of Rhabdocalyptus dawsoni (Lambe, 1873)
Mackie, G. O., & Singla, C. L. (1983) · Philosophical transactions of the Royal Society of London. Series B, Biological sciences · doi:10.1098/rstb.1983.0028 · Cited by 142
Discovery of a “Living Dinosaur”: Globally unique modern hexactinellid sponge reefs off British Columbia, Canada
Krautter, M., Conway, K. W., Barrie, J. V., & Neuweiler, M. (2001) · Facies · doi:10.1007/bf02668178 · Cited by 124
The Rate of Compensatory Evolution
Stephan, W. (1996) · Genetics · doi:10.1093/genetics/144.1.419 · Cited by 118
Electrical recording from a glass sponge
Leys, S. P., & Mackie, G. O. (1997) · Nature · doi:10.1038/387029b0 · Cited by 106
Holocene sponge bioherms on the western Canadian continental shelf
Conway, K. W., Barrie, J. V., Austin, W. C., & Luternauer, J. L. (1991) · Continental Shelf Research · doi:10.1016/0278-4343(91)90079-l · Cited by 100
Bilaterian Phylogeny and Uncritical Recycling of Morphological Data Sets
Jenner, R. A. (2001) · Systematic Biology · doi:10.1080/106351501753328857 · Cited by 99
Hexactinellid Sponge Reefs on the Canadian Continental Shelf: A Unique "Living Fossil"
Conway, K. W., Krautter, M., Barrie, J. V., & Neuweiler, M. (2001) · Geoscience Canada · Cited by 87
Fair-Balance Paradox, Star-tree Paradox, and Bayesian Phylogenetics
Yang, Z. (2007) · Molecular Biology and Evolution · doi:10.1093/molbev/msm081 · Cited by 79
Non-monophyly of most supraspecific taxa of calcareous sponges (Porifera, Calcarea) revealed by increased taxon sampling and partitioned Bayesian analysis of ribosomal DNA
Dohrmann, M., Voigt, O., Erpenbeck, D., & Wörheide, G. (2006) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2006.04.016 · Cited by 79
Self-citation
A chemical view of the most ancient metazoa – biomarker chemotaxonomy of hexactinellid sponges
Thiel, V., Blumenberg, M., Hefter, J., Pape, T., Pomponi, S. A., Reed, J. K., Joachim Reitner, A., Wörheide, G., & Michaelis, W. (2002) · Die Naturwissenschaften · doi:10.1007/s00114-001-0284-9 · Cited by 77
Self-citation
Asexual reproduction in homoscleromorph sponges (Porifera; Homoscleromorpha)
Ereskovsky, A. V., & Tokina, D. B. (2006) · Marine Biology · doi:10.1007/s00227-006-0439-5 · Cited by 71
Monophyly of the Porifera
Joachim Reitner, A., & Mehl, D. (1996) · Geo-Leo e-docs (Deutsche Initiative für Netzwerkinformation) · doi:10.23689/fidgeo-2563 · Cited by 58
Diversity and distribution of Porifera in the bathyal and abyssal Weddell Sea and adjacent areas
Janussen, D., & Tendal, O. S. (2007) · Deep Sea Research Part II Topical Studies in Oceanography · doi:10.1016/j.dsr2.2007.07.012 · Cited by 57
Self-citation
The Hexactinellida of the Siboga Expedition.
Ijima, I., & Okada, Y. (1927) · Cited by 57
Über den Bau und das System der Hexactinelliden
Schulze, F. E. (1886) · Medical Entomology and Zoology · Cited by 56
Hexactinellida
Schulze, F. E. (1904) · G. Fischer eBooks · doi:10.5962/bhl.title.85181 · Cited by 55
Family Rossellidae Schulze, 1885
Tabachnick, K. R. (2002) · Springer eBooks · doi:10.1007/978-1-4615-0747-5_148 · Cited by 54
Phylogeny and evolution of calcareous sponges
Manuel, M. (2006) · Canadian Journal of Zoology · doi:10.1139/z06-005 · Cited by 53
Structural partitioning, paired-sites models and evolution of the ITS transcript in Syzygium and Myrtaceae
Biffin, E., Harrington, M. G., Crisp, M. D., Craven, L. A., & Gadek, P. A. (2006) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2006.08.013 · Cited by 50
Deficient Merlia Normani Kirkpatrick, 1908, from the Curaçao Reefs, with a discussion on the Phylogenetic Interpretation of Sclerosponges
van Soest, R. W. M. (1984) · Bijdragen tot de Dierkunde · doi:10.1163/26660644-05402007 · Cited by 47
Embryogenesis in the glass sponge Oopsacas minuta: Formation of syncytia by fusion of blastomeres
Leys, S. P. (2006) · Integrative and Comparative Biology · doi:10.1093/icb/icj016 · Cited by 46
Deep-sea Hexactinellida (Porifera) of the Weddell Sea
Janussen, D., Tabachnick, K. R., & Tendal, O. S. (2004) · Deep Sea Research Part II Topical Studies in Oceanography · doi:10.1016/j.dsr2.2004.07.018 · Cited by 44
Self-citation
Partial Sequence of a Sponge Mitochondrial Genome Reveals Sequence Similarity to Cnidaria in Cytochrome Oxidase Subunit II and the Large Ribosomal RNA Subunit
Watkins, R. F., & Beckenbach, A. T. (1999) · Journal of Molecular Evolution · doi:10.1007/pl00006497 · Cited by 40
Molecular evolution of rDNA in early diverging Metazoa: First comparative analysis and phylogenetic application of complete SSU rRNA secondary structures in Porifera
Voigt, O., Erpenbeck, D., & Wörheide, G. (2008) · BMC Evolutionary Biology · doi:10.1186/1471-2148-8-69 · Cited by 39
Self-citation
Amerikanische Hexactinelliden. Nach dem Materiale der Albatross-Expedition
Schulze, F. E., & zu Berlin., D. A. D. W. (1899) · G. Fischer eBooks · doi:10.5962/bhl.title.85189 · Cited by 38
Family Euplectellidae Gray, 1867
Tabachnick, K. R. (2002) · Springer eBooks · doi:10.1007/978-1-4615-0747-5_146 · Cited by 35
Toward Assigning Helical Regions in Alignments of Ribosomal RNA and Testing the Appropriateness of Evolutionary Models
Schöniger, M., & von Haeseler, A. (1999) · Journal of Molecular Evolution · doi:10.1007/pl00006590 · Cited by 35
Phylogenetic Analyses Under Secondary Structure-Specific Substitution Models Outperform Traditional Approaches: Case Studies with Diploblast LSU
Erpenbeck, D., Nichols, S., Voigt, O., Dohrmann, M., Degnan, B. M., Hooper, J. N. A., & Wörheide, G. (2007) · Journal of Molecular Evolution · doi:10.1007/s00239-006-0146-3 · Cited by 35
Self-citation
Class Hexactinellida Schmidt, 1870
Reiswig, H. M. (2002) · Springer eBooks · doi:10.1007/978-1-4615-0747-5_123 · Cited by 34
The Bayesian "Star Paradox" Persists for Long Finite Sequences
Steel, M., & Matsen, F. A., IV (2007) · Molecular Biology and Evolution · doi:10.1093/molbev/msm028 · Cited by 33
Introduction to ANDEEP, summary and outlook
Brandt, A., Ebbe, B., & GOODAY, A. J. (2007) · Deep Sea Research Part II Topical Studies in Oceanography · doi:10.1016/j.dsr2.2007.07.001 · Cited by 30
Tissue organization ofFarrea occa (Porifera, Hexactinellida)
Reiswig, H. M., & Mehl, D. (1991) · Zoomorphology · doi:10.1007/bf01668020 · Cited by 26
Molecular phylogenetic position of hexactinellid sponges in relation to the Protista and Demospongiae.
West, L., & Powers, D. C. (1993) · PubMed · Cited by 20
Defining phyla: morphological and molecular clues to metazoan evolution
Nielsen, C. (2003) · Evolution & Development · doi:10.1046/j.1525-142x.2003.03046.x · Cited by 19
Drafting a Tree
Pennisi, E. (2003) · Science · doi:10.1126/science.300.5626.1694 · Cited by 18
The hexactinellida of the Siboga expedition
飯島, 魁. (1926) · BRILL eBooks · Cited by 16
Family Aphrocallistidae Gray, 1867
Reiswig, H. M. (2002) · Springer eBooks · doi:10.1007/978-1-4615-0747-5_131 · Cited by 12
Revision of the subgenus Neopsacas (Hexactinellida, Rossellidae, Crateromorpha) with the description of new species and subspecies
Menshenina, L. L., Tabachnick, K. R., & Janussen, D. (2007) · Zootaxa · doi:10.11646/zootaxa.1463.1.6 · Cited by 12
Self-citation
Occurrence of dyctyid hexactinellid sponges in the Upper Devonian•of the Holy Cross Mts
Rigby, J. R., Racki, G., & Wrzołek, T. (1981) · Acta Geologica Polonica · Cited by 12
Family Tretodictyidae Schulze, 1886
Reiswig, H. M. (2002) · Springer eBooks · doi:10.1007/978-1-4615-0747-5_137 · Cited by 10
An account of the Indian Triaxonia collected by the Royal Indian Marine Survey Ship Investigator
Schulze, F. E., & von Lendenfeld, R. (1902) · doi:10.5962/bhl.title.9074 · Cited by 10
Report on the scientific results of the voyage of H.M.S. Challenger during the years 1873-76 under the command of Captain George S. Nares ...
Buchan, A., Huxley, T. H., Murray, J., Nares, G. S., Nares, G. S., Pelseneer, P., Thomson, C. W., Thomson, F. T., & Challenger (1887) · Cited by 8
Two new tretodictyids (Hexactinellida: Hexactinosida: Tretodictyidae) from the coasts of North America
Reiswig, H. M., Dohrmann, M., Pomponi, S. A., & Wörheide, G. (2008) · Zootaxa · doi:10.11646/zootaxa.1721.1.4 · Cited by 8
Self-citation
An approach to the phylegenetic reconstruction of Amphidiscophora (Porifera:Hexactinellida
Tabachnick, K. R. (1999) · Biodiversity Heritage Library (Smithsonian Institution) · Cited by 7
Family Leucopsacidae Ijima, 1903
Tabachnick, K. R. (2002) · Springer eBooks · doi:10.1007/978-1-4615-0747-5_147 · Cited by 6
Order Amphidiscosida Schrammen, 1924
Reiswig, H. M. (2002) · Springer eBooks · doi:10.1007/978-1-4615-0747-5_126 · Cited by 6
Order Lyssacinosida Zittel, 1877
Reiswig, H. M. (2002) · Springer eBooks · doi:10.1007/978-1-4615-0747-5_145 · Cited by 5
Biomarker aus Kaltwasser- und Tiefseekieselschwämmen : Phylogenie, Chemotaxonomie und chemische Ökologie der Demospongiae und der Hexactinellida
Blumenberg, M. (2003) · Cited by 4
Mass occurrence of Rossella nodastrella Topsent on bathyal coral reefs of Rockall Bank, W of Ireland (Lyssacinosida, Hexactinellida).
van Soest, R. W. M., van Duyl, F. C., Maier, C., Lavaleye, M. S. S., Beglinger, E. J., Tabachnick, K. R., Hajdu, C., & Muricy, L.-H. (2007) · UvA-DARE (University of Amsterdam) · Cited by 4
Redescription of Caryanda jiuyishana Fu & Zheng, 2000 (Orthoptera: Acrididae: Oxyinae: Oxyini) with proposal of a new synomym
Huang, J., Fu, P., & Huang, Y. (2007) · Zootaxa · doi:10.11646/zootaxa.1436.1.3 · Cited by 4
Lyssacinosida incertae sedis
Tabachnick, K. R. (2002) · Springer eBooks · doi:10.1007/978-1-4615-0747-5_149 · Cited by 3
Ediacarian sponge spicule clusters from southwestern Mongolia and the origins of the Cambrian fauna
(1997) · doi:10.1130/0091-7613(1997)025

Research works printed but not linked: 10

Barthel, 1994, Antarctic Hexactinellida, 1
Böger, 1988, Versuch über das phylogenetische System der Porifera, Meyniana, 40, 143
Donofrio, 1991, Radiolaria and Porifera (spicula) from the Upper Triassic of Aghdarband (NE-Iran), Abh. Geol. B.-A. Wien, 38, 205
Grothe, 1989, On the phylogeny of homoscleromorphs, Berl. Geowiss. Abh. A, 106, 155
Mehl, 1992, Die Entwicklung der Hexactinellida seit dem Mesozoikum Paläobiologie, Phylogenie und Evolutionsökologie, Berl. Geowiss. Abh. E, 2, 1
Mehl, 1996, Phylogenie und Evolutionsökologie der Hexactinellida (Porifera) im Paläozoikum, Geol. Paläontol. Mitt. Innsbruck Sonderband, 4, 1
Mostler, 1986, Beitrag zur stratigraphischen Verbreitung und phylogenetischen Stellung der Amphidiscophora und Hexasterophora (Hexactinellida, Porifera), Mitt. Österr. geol. Ges., 78, 319
Mostler, 1990, On the origin of Hexasterophora and Amphidiscophora (Hexactinellida). A further discussion of their phylogenetic significance, Fossil Cnidaria, 19, 13
Rigby, 1986, Late Devonian sponges of western Australia, Geol. Surv. W. Aust. Rep., 18, 1
Schulze, 1887, Report on the Hexactinellida, 1

Sorted by citations

Phylogenomics Revives Traditional Views on Deep Animal Relationships
Philippe, H., Derelle, R., Lopez, P., Pick, K., Borchiellini, C., Boury-Esnault, N., Vacelet, J., Renard, E., Houliston, E., Quéinnec, E., et al. (2009) · Current Biology · doi:10.1016/j.cub.2009.02.052 · Cited by 695
“them from the demosponges and favored a sister group relationship to the Calcispongiae (with highest support of 91% [BS] obtained in the analysis with outgroup 2), in line with results from 18S rRNA analyses [25, 26] but in conflict with traditional classification schemes (see [27]).”
Self-citation
Global Diversity of Sponges (Porifera)
van Soest, R. W. M., Boury‐Esnault, N., Vacelet, J., Dohrmann, M., Erpenbeck, D., de Voogd, N. J., Santodomingo, N., Vanhoorne, B., Kelly, M., & Hooper, J. N. A. (2012) · PLoS ONE · doi:10.1371/journal.pone.0035105 · Cited by 672
Self-citation
Error, signal, and the placement of Ctenophora sister to all other animals
Whelan, N. V., Kocot, K. M., Moroz, L. L., & Halanych, K. M. (2015) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1503453112 · Cited by 331
“Past critiques of studies that found ctenophores to be sister to all other animals have emphasized the CAT model as the most appropriate model for deep phylogenomics because it is an infinite mixture model that accounts for site-heterogeneity (7, 8, 29).”
Background
Chitin and collagen as universal and alternative templates in biomineralization
Ehrlich, H. (2010) · International Geology Review · doi:10.1080/00206811003679521 · Cited by 341
“For example, the fossil records of the chitin- and collagen-based glass sponges date back to the late Neoproterozoic, and no major modifications of the body plan have occurred since then (Dohrmann et al. 2008).”
Background
Improved phylogenomic taxon sampling noticeably affects nonbilaterian relationships
Pick, K. S., Philippe, H., Schreiber, F., Erpenbeck, D., Jackson, D. J., Wrede, P., Wiens, M., Alie, A., Morgenstern, B., Manuel, M., et al. (2010) · Molecular Biology and Evolution · doi:10.1093/molbev/msq089 · Cited by 334
“The Homoscleromorpha, a taxon previously assigned to the Demospongiae (see Hooper and Van Soest 2002), are found to be the sister group to Calcarea as suggested by van Soest (1984) and Grothe (1989) based on morphology and subsequently by Dohrmann et al. (2008) based on ribosomal RNA (rRNA) data.”
BackgroundResultSelf-citation

See all 143

Authors: Dohrmann, M., Janussen, D., Reitner, J., Collins, A. G., & Wörheide, G.
Affiliations: University of Göttingen (DE)
Senckenberg Research Institute and Natural History Museum Frankfurt/M (DE)
Georg-August-Universität Göttingen Geowissenschaftliches Zentrum Göttingen (GZG), Abteilung Geobiologie, Goldschmidtstrasse 3, 37077 Göttingen, Germany; E-mail: gert.woerheide@geo.uni-goettingen.de (G.W.)
Smithsonian Institution (US)
Corresponding author: Wörheide, Gert
ORCID: Janussen, Dorte
Collins, Allen G.
Wörheide, Gert
Venue: Systematic Biology
Publisher: Oxford University Press (OUP)
Published: 2008-06-01
Volume: 57
Issue: 3
Pages: 388-405
ISSN: 1063-5157 (ISSN-L)
1076-836X
DOI: 10.1080/10635150802161088
OpenAlex: W2163478051
Semantic Scholar: 6d8dcf741eb7fa9e5bb5f037f2b557ca8a8b1a00
Cited by: 143
References: 125
Citations by year: 2026: 4 · 2025: 4 · 2024: 2 · 2023: 6 · 2022: 4 · 2021: 10 · 2019: 3 · 2018: 6 · 2017: 5 · 2016: 3 · 2015: 8 · 2014: 9 · 2013: 11 · 2012: 7
FWCI: 15.22
Type: journal article
Language: en
Open access: closed
Locations: Systematic Biology (publishedVersion)
PubMed (publishedVersion)
Smithsonian Digital Repository (Smithsonian Institution) (submittedVersion)
Funders: Society of Systematic Biologists
Boehringer Ingelheim Fonds
Deutsche Forschungsgemeinschaft
Topics: Life Sciences › Agricultural and Biological Sciences › Animal Science and Zoology › Marine Invertebrate Physiology and Ecology
Life Sciences › Biochemistry, Genetics and Molecular Biology › Biotechnology › Marine Sponges and Natural Products
Life Sciences › Agricultural and Biological Sciences › Ecology, Evolution, Behavior and Systematics › Protist diversity and phylogeny
Keywords: Hexactinellida, sponge phylogeny, early animal evolution, Demospongiae, calcareous sponges, Homoscleromorpha, rDNA phylogeny, ribosomal RNA secondary structure, deep-sea sponges, homoplasy
MeSH terms: Animals, Base Sequence, Bayes Theorem, DNA, Ribosomal, Biological Evolution, Microscopy, Electron, Scanning, Models, Genetic, Phylogeny, Porifera, Sequence Alignment, Sequence Analysis, DNA, Sequence Analysis, RNA

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review

Phylogeny and Evolution of Glass Sponges (Porifera, Hexactinellida)

Abstract

Overview

Integrity signals

Verification

Claims the paper makes

Claims other papers make about this one

Self-check

Citations

Cites

Cited by

Related

Metadata

Record

About these checks