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Identification and host response interaction study of SARS-CoV-2 encoded miRNA-like sequences: an in silico approach

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Profiling COVID-19 Genetic Research: A Data-Driven Study Utilizing Intelligent Bibliometrics

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C reactive protein utilisation, a biomarker for early COVID-19 treatment, improves lenzilumab efficacy: results from the randomised phase 3 ‘LIVE-AIR’ trial

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Transcriptome and DNA methylome analysis of peripheral blood samples reveals incomplete restoration and transposable element activation after 3-months recovery of COVID-19

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Severity of COVID-19 patients with coexistence of asthma and vitamin D deficiency

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Severe acute respiratory syndrome coronavirus 2 virus-like particles induce dendritic cell maturation and modulate T cell immunity

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A potential role for SARS-CoV-2 small viral RNAs in targeting host microRNAs and modulating gene expression

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Early Transcriptional Responses of Human Nasal Epithelial Cells to Infection with Influenza A and SARS-CoV-2 Virus Differ and Are Influenced by Physiological Temperature

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Thymidine Phosphorylase Is Increased in COVID-19 Patients in an Acuity-Dependent Manner

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Bioinformatics and system biology approaches to identify the diseasome and comorbidities complexities of SARS-CoV-2 infection with the digestive tract disorders

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COVID-19 Severity Potentially Modulated by Cardiovascular-Disease-Associated Immune Dysregulation

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Investigational antiviral drugs for the treatment of COVID-19 patients

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Hydrogen therapy as an effective and novel adjuvant treatment against COVID-19

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Heterozygote advantage of the type II deiodinase thr92Ala polymorphism on intrahospital mortality of COVID-19

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Biofunctional roles of estrogen in coronavirus disease 2019: Beyond a steroid hormone

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The CXCL9/10/11-CXCR3 axis as a predictor of COVID-19 progression: a prospective, case-control study

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Role of CCL2/CCR2 axis in pulmonary fibrosis induced by respiratory viruses

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[Mechanism of Qingfei Paidu decoction for treatment of COVID-19: analysis based on network pharmacology and molecular docking technology].

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Single cell sequencing unraveling genetic basis of severe COVID19 in obesity

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New putative insights into neprilysin (NEP)-dependent pharmacotherapeutic role of roflumilast in treating COVID-19

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Review on COVID-19 Etiopathogenesis, Clinical Presentation and Treatment Available with Emphasis on ACE2

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Safety and Transcriptome Analysis of Live Attenuated Brucella Vaccine Strain S2 on Non-pregnant Cynomolgus Monkeys Without Abortive Effect on Pregnant Cynomolgus Monkeys

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Major Insights in Dynamics of Host Response to SARS-CoV-2: Impacts and Challenges

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Immunouniverse of SARS-CoV-2

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Dual RNA-Seq analysis of SARS-CoV-2 correlates specific human transcriptional response pathways directly to viral expression

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Screening of Gene Expression Markers for Corona Virus Disease 2019 Through Boruta_MCFS Feature Selection

Sun, Y., Zhang, Q., Yang, Q., Yao, M., Xu, F., & Chen, W. (2022) · Frontiers in Public Health · doi:10.3389/fpubh.2022.901602 · Cited by 12

Bystander effect of SARS-CoV-2 spike protein on human monocytic THP-1 cell activation and initiation of prothrombogenic stimulus representing severe COVID-19

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SARS-CoV-2 Covid-19 Infection During Pregnancy and Differential DNA Methylation in Human Cord Blood Cells From Term Neonates

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Macrophage Activation and Cytokine Release Syndrome in COVID-19: Current Updates and Analysis of Repurposed and Investigational Anti-Cytokine Drugs

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SARS-CoV-2 Portrayed against HIV: Contrary Viral Strategies in Similar Disguise

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Interferon β, an enhancer of the innate immune response against SARS-CoV-2 infection

Kali, S. K., Dröge, P., & Murugan, P. (2021) · Microbial Pathogenesis · doi:10.1016/j.micpath.2021.105105 · Cited by 11

Host metabolic reprogramming in response to SARS-Cov-2 infectionPreprint

Moolamalla, S. T. R., Chauhan, R., Priyakumar, U. D., & Vinod, P. K. U. (2020) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2020.08.02.232645 · Cited by 12

Identification of Repurposable Drugs and Adverse Drug Reactions for Various Courses of COVID-19 Based on Single-Cell RNA Sequencing Data

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The Chemokines CXC, CC and C in the Pathogenesis of COVID-19 Disease and as Surrogates of Vaccine-Induced Innate and Adaptive Protective Responses

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Chemokine receptors in COVID-19 infection

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Narrative review of the immune response against coronavirus: An overview, applicability for SARS-COV-2, and therapeutic implications

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Understanding the Host Innate Immune Responses against SARS-CoV-2 Infection and COVID-19 Pathogenesis

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Dissecting the common and compartment-specific features of COVID-19 severity in the lung and periphery with single-cell resolution

Overholt, K. J., Krog, J., Zanoni, I., & Bryson, B. D. (2021) · iScience · doi:10.1016/j.isci.2021.102738 · Cited by 11

Saliva as a Potential Specimen to Monitor IL-6, TNF-α and IL-10 in COVID-19 Patients

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Exploring the Immunomodulatory Aspect of Mesenchymal Stem Cells for Treatment of Severe Coronavirus Disease 19

Chaudhary, J. K., Saini, D., Chaudhary, P. K., Maurya, A., Verma, G. K., Gupta, A. K., Roshan, R., Vats, T. K., Garg, N., Yadav, D., et al. (2022) · Cells · doi:10.3390/cells11142175 · Cited by 11

The effect of reparixin on survival in patients at high risk for in-hospital mortality: a meta-analysis of randomized trials

Landoni, G., Zangrillo, A., Piersanti, G., Scquizzato, T., & Piemonti, L. (2022) · Frontiers in Immunology · doi:10.3389/fimmu.2022.932251 · Cited by 10

Lucidenic acid A inhibits the binding of hACE2 receptor with spike protein to prevent SARS-CoV-2 invasion

Xu, J., Yang, W., Pan, Y., Xu, H., He, L., Zheng, B., Xie, Y., & Wu, X. (2022) · Food and Chemical Toxicology · doi:10.1016/j.fct.2022.113438 · Cited by 10

The dynamics of γδ T cell responses in nonhuman primates during SARS-CoV-2 infection

Fears, A. C., Walker, E. M., Chirichella, N. R., Slisarenko, N., Merino, K. M., Golden, N., Picou, B., Spencer, S., Russell‐Lodrigue, K., Doyle‐Meyers, L. A., et al. (2022) · Communications Biology · doi:10.1038/s42003-022-04310-y · Cited by 11

SARS-CoV-2: A Glance at the Innate Immune Response Elicited by Infection and Vaccination

Manfrini, N., Notarbartolo, S., Grifantini, R., & Pesce, E. (2024) · Antibodies · doi:10.3390/antib13010013 · Cited by 13

Tissue Factor and COVID-19 Associated Thrombosis

Mackman, N. (2024) · Arteriosclerosis Thrombosis and Vascular Biology · doi:10.1161/atvbaha.123.320144 · Cited by 11

Comprehensive pathway enrichment analysis workflows: COVID-19 case study

Agapito, G., Pastrello, C., & Jurišica, I. (2020) · Briefings in Bioinformatics · doi:10.1093/bib/bbaa377 · Cited by 12

Insight into the emerging role of SARS-CoV-2 nonstructural and accessory proteins in modulation of multiple mechanisms of host innate defense

Abdalla, A. E., Xie, J., Junaid, K., Younas, S., Elsaman, T., Abosalif, K. O. A., Alameen, A. A. M., Mahjoob, M. O., Elamir, M. Y. M., & Ejaz, H. (2021) · Bosnian Journal of Basic Medical Sciences · doi:10.17305/bjbms.2020.5543 · Cited by 11

Exploring the role of neutrophils in infectious and noninfectious pulmonary disorders

Arora, A., & Singh, A. (2023) · International Reviews of Immunology · doi:10.1080/08830185.2023.2222769 · Cited by 12

Unique transcriptional changes in coagulation cascade genes in SARS-CoV-2-infected lung epithelial cells: A potential factor in COVID-19 coagulopathiesPreprint

FitzGerald, E. S., & Jamieson, A. M. (2020) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2020.07.06.182972 · Cited by 11

Molecular signatures in the progression of COVID-19 severity

De, R., & Azad, R. K. (2022) · Scientific Reports · doi:10.1038/s41598-022-26657-2 · Cited by 10

Transcriptomic identification of genes expressed in invasive S. aureus diabetic foot ulcer infection

Agidigbi, T. S., Kwon, H., Knight, J., Zhao, D., Lee, F. Y., & Oh, I. C. (2023) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2023.1198115 · Cited by 10

Transcriptomic analysis of sorted lung cells revealed a proviral activity of the NF-κB pathway toward SARS-CoV-2

Bhargava, A., Szachnowski, U., Chazal, M., Foretek, D., Caval, V., Aicher, S., da Fonseca, J. P., Jeannin, P., Beauclair, G., Monot, M., et al. (2023) · iScience · doi:10.1016/j.isci.2023.108449 · Cited by 12

The spike protein of SARS-CoV-2 induces inflammation and EMT of lung epithelial cells and fibroblasts through the upregulation of GADD45A

Cai, J., Ma, W., Wang, X., Chang, H., Wei, Z., Li, J., & Zeng, M. (2023) · Open Medicine · doi:10.1515/med-2023-0779 · Cited by 10

Proteomic profiling identifies biomarkers of COVID-19 severity

Harriott, N. C., & Ryan, A. L. (2023) · Heliyon · doi:10.1016/j.heliyon.2023.e23320 · Cited by 11

Potential Applications of Nanomaterials to Quench the Cytokine Storm in Coronavirus Disease 19

Pisani, A., Pompa, P. P., & Bardi, G. (2020) · Frontiers in Bioengineering and Biotechnology · doi:10.3389/fbioe.2020.00906 · Cited by 10

Peripheral Inflammatory Cytokines and Lymphocyte Subset Features of Deceased COVID‐19 Patients

Jiang, N., Li, Z., Yang, B., Jin, M., Sun, Y., He, Y., Liu, Y., Wang, Y., Si, D., Ma, P., et al. (2021) · BioMed Research International · doi:10.1155/2021/9101082 · Cited by 10

IL-33 Enhances ACE2 Expression on Epidermal Keratinocytes in Atopic Dermatitis: A Plausible Issue for SARS-CoV-2 Transmission in Inflamed Atopic Skin

Lin, E.-C., & Hong, C. (2022) · Biomedicines · doi:10.3390/biomedicines10051183 · Cited by 11

A brief overview of SARS-CoV-2 infection and its management strategies: a recent update

Das, A., Pathak, S., Premkumar, M., Sarpparajan, C. V., Balaji, E., Duttaroy, A. K., & Banerjee, A. (2023) · Molecular and Cellular Biochemistry · doi:10.1007/s11010-023-04848-3 · Cited by 10

Natural evidence of coronaviral 2′-O-methyltransferase activity affecting viral pathogenesis via improved substrate RNA binding

Deng, J., Yang, S., Li, Y., Tan, X., Liu, J., Yu, Y., Ding, Q., Fan, C., Wang, H., Chen, X., et al. (2024) · Signal Transduction and Targeted Therapy · doi:10.1038/s41392-024-01860-x · Cited by 10

Elevation in viral entry genes and innate immunity compromise underlying increased infectivity and severity of COVID-19 in cancer patients

Kwan, J. Y. Y., Lin, L., Bell, R., Bruce, J. P., Richardson, C., Pugh, T. J., & Liu, F. (2021) · Scientific Reports · doi:10.1038/s41598-021-83366-y · Cited by 11

SARS-CoV-2 Proteins Induce Endotoxin Tolerance Hallmarks: A Demonstration in Patients with COVID-19

Ortiz, J. A., Lozano‐Rodríguez, R., Martín‐Quirós, A., Maroun‐Eid, C., Terrón‐Arcos, V., Montalbán-Hernández, K. M., Valentín, J., del Val, E. M., García-Garrido, M. A., del Balzo‐Castillo, Á., et al. (2021) · The Journal of Immunology · doi:10.4049/jimmunol.2001449 · Cited by 10

Human Identical Sequences, hyaluronan, and hymecromone ─ the new mechanism and management of COVID-19

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Metatranscriptome Reveals Specific Immune and Microbial Signatures of Respiratory Syncytial Virus Infection in Children

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SARS-Cov-2 spike induces intestinal barrier dysfunction through the interaction between CEACAM5 and Galectin-9

Luo, Y., Zhang, Z., Ren, J., Dou, C., Wen, J., Yang, Y., Li, X., Yan, Z., & Han, Y. (2024) · Frontiers in Immunology · doi:10.3389/fimmu.2024.1303356 · Cited by 10

Systems Immunology Approaches to Understanding Immune Responses in Acute Infection of Yellow Fever Patients

Gonçalves, A. N. A., Costa, P. R., Thomazella, M. V., Correia, C. A., Marmorato, M. P., Dias, J. Z. D. C., Silveira, C. G. T., Maestri, A., Cerqueira, N. B., Moreira, C. H. V., et al. (2024) · Journal of Medical Virology · doi:10.1002/jmv.70099 · Cited by 9

Metabolic Syndrome “Interacts” With COVID-19

Guo, Z., Jiang, S., Li, Z., & Chen, S. (2020) · BIO Integration · doi:10.15212/bioi-2020-0035 · Cited by 10

Expression of NKG2A inhibitory receptor on cytotoxic lymphocytes as an indicator of severity in Corona Virus Disease 2019 (COVID-19) patients

Yasin, M. M., Shehata, I. H., Elsheikh, N. G., & Elsayed, M. (2021) · Egyptian journal of Immunology · doi:10.55133/eji.280116 · Cited by 9

The potential role of abnormal angiotensin-converting enzyme 2 expression correlated with immune infiltration after SARS-CoV-2 infection in the prognosis of breast cancer

Jiang, Y., Chen, L., Shen, J., Mei, X., Yao, J., Chen, T., & Zhou, Y. (2021) · Aging · doi:10.18632/aging.203418 · Cited by 9

Pathogenic Mechanism and Multi-omics Analysis of Oral Manifestations in COVID-19

Hao, M., Wang, D., Xia, Q., Kan, S., Chang, L., Liu, H., Yang, Z., & Liu, W. (2022) · Frontiers in Immunology · doi:10.3389/fimmu.2022.879792 · Cited by 11

Galectin-9 protects humanized-ACE2 immunocompetent mice from SARS-CoV-2 infection

Yeung, S. T., Premeaux, T. A., Du, L., Niki, T., Pillai, S. K., Khanna, K. M., & Ndhlovu, L. C. (2022) · Frontiers in Immunology · doi:10.3389/fimmu.2022.1011185 · Cited by 9

Pathological Roles of Pulmonary Cells in Acute Lung Injury: Lessons from Clinical Practice

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Role of innate immunity in SARS-CoV-2 infection

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Previous infection with seasonal coronaviruses does not protect male Syrian hamsters from challenge with SARS-CoV-2

Francis, M. E., Jansen, E. B., Yourkowski, A., Selim, A., Swan, C. L., MacPhee, B. K., Thivierge, B. M., Buchanan, R. M., Lavender, K. J., Darbellay, J., et al. (2023) · Nature Communications · doi:10.1038/s41467-023-41761-1 · Cited by 11

The value of lymphocyte count in determining the severity of COVID-19 and estimating the time for nucleic acid test results to turn negative

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SARS-CoV-2, Endothelial Dysfunction, and the Renin-Angiotensin System (RAS): A Potentially Dangerous Triad for the Development of Pre-Eclampsia

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Comprehensive immune cell profiling depicts an early immune response associated with severe coronavirus disease 2019 in cancer patients

Tembhare, P. R., Sriram, H., Chatterjee, G., Khanka, T., Gokarn, A. G., Mirgh, S. P., Rajendra, A., Chaturvedi, A., Ghogale, S., Deshpande, N., et al. (2021) · Immunology and Cell Biology · doi:10.1111/imcb.12504 · Cited by 10

Host factors: Implications in immunopathogenesis of COVID-19

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Postmortem Documentation of SARS-CoV-2 in Utero and Postpartum Transmission, through Amniotic Fluid, Placental, and Pulmonary Tissue RT-PCR

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A Distinct Dexamethasone-Dependent Gene Expression Profile in the Lungs of COVID-19 Patients

Fahnøe, U., Ronit, A., Berg, R. M. G., Jørgensen, S. E., Mogensen, T. H., Underwood, A. P., Scheel, T. K. H., Bukh, J., & Plovsing, R. R. (2022) · The Journal of Infectious Diseases · doi:10.1093/infdis/jiac218 · Cited by 7

Does IFITM3 link inflammation to tumorigenesis?

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The turning point of COVID‐19 severity is associated with a unique circulating neutrophil gene signature

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Aid or Antagonize: Nuclear Long Noncoding RNAs Regulate Host Responses and Outcomes of Viral Infections

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Methylation of Host Genes Associated with Coronavirus Infection from Birth to 26 Years

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Shetty, L., Nahar, S., Domah, T. K., & Raj, A. T. (2020) · Medical Hypotheses · doi:10.1016/j.mehy.2020.110462 · Cited by 9

Genome-scale metabolic modeling reveals SARS-CoV-2-induced metabolic changes and antiviral targetsPreprint

Cheng, K., Martin-Sancho, L., Pal, L. R., Pu, Y., Riva, L., Yin, X., Sinha, S., Nair, N. U., Chanda, S. K., & Ruppin, E. (2021) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2021.01.27.428543 · Cited by 10

CCR2-dependent monocyte-derived cells restrict SARS-CoV-2 infectionPreprint

Vanderheiden, A., Thomas, J. K., Soung, A., Davis-Gardner, M. E., Floyd, K. A., Jin, F., Cowan, D. A., Pellegrini, K. L., Creanga, A., Pegu, A., et al. (2021) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2021.05.03.442538 · Cited by 9

Host transcriptional responses in nasal swabs identify potential SARS-CoV-2 infection in PCR negative patients

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Interplay between Neutrophils, NETs and T-Cells in SARS-CoV-2 Infection—A Missing Piece of the Puzzle in the COVID-19 Pathogenesis?

Niedźwiedzka‐Rystwej, P., Grywalska, E., Hrynkiewicz, R., Bębnowska, D., Wołącewicz, M., Majchrzak, A., & Parczewski, M. (2021) · Cells · doi:10.3390/cells10071817 · Cited by 8

Buffy Coat Transcriptomic Analysis Reveals Alterations in Host Cell Protein Synthesis and Cell Cycle in Severe COVID-19 Patients

Cavalcante, L. T. D. F., da Fonseca, G. C., Leon, L. A. A., Salvio, A. L., Brustolini, O. J. B., Gerber, A. L., Guimarães, A. P. D. C., Marques, C. A. B., Fernandes, R. A., Filho, C. H. F. R., et al. (2022) · International Journal of Molecular Sciences · doi:10.3390/ijms232113588 · Cited by 8

Evaluation of the interaction between tumor growth factor-β and interferon type I pathways in patients with COVID-19: focusing on ages 1 to 90 years

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Differential Gene Expression of SARS-CoV-2 Positive Bronchoalveolar Lavages: A Case Series

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Viscoelastic testing reveals normalization of the coagulation profile 12 weeks after severe COVID-19

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An in silico analysis identifies drugs potentially modulating the cytokine storm triggered by SARS-CoV-2 infection

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Transcriptomic analysis of COVID‑19 lungs and bronchoalveolar lavage fluid samples reveals predominant B cell activation responses to infection

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Transcriptomic dysregulations associated with SARS-CoV-2 infection in human nasopharyngeal and peripheral blood mononuclear cellsPreprint

de Melo, C. V. B., Bhuiyan, M. A., Gatua, W., Kanyerezi, S., Uzairue, L. I., Abechi, P., Kumar, K., Rahmat, J., Giwa, A. O., Mwandira, G., et al. (2020) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2020.09.09.289850 · Cited by 2

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Immune and Metabolic Signatures of COVID-19 Revealed by Transcriptomics Data Reuse

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