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A New Statistical Method for Haplotype Reconstruction from Population Data

Open access
Stephens, Matthew, Smith, Nicholas J., Donnelly, Peter·2001·The American Journal of Human Genetics

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Cites

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Research works printed but not linked: 19

  1. Donnelly, 1986, Partition structures, Polya Urns, the Ewens sampling formula, and the age of alleles, Theor Popul Biol, 30, 271, 10.1016/0040-5809(86)90037-7 · DOI
  2. Excoffier, 1998, Incorporating genotypes of relatives into a test of linkage disequilibrium, Am J Hum Genet, 62, 171, 10.1086/301674 · DOI
  3. Fallin, 2000, Accuracy of haplotype frequency estimation for biallelic loci, via the expectation-maximization algorithm for unphased diploid genotype data, Am J Hum Genet, 67, 947, 10.1086/303069 · DOI · Paper page
  4. Gelman, 1992, Inference from iterative simulation using multiple sequences (with discussion), Stat Sci, 7, 457, 10.1214/ss/1177011136 · DOI · Paper page
  5. Harding, 1997, Archaic African and Asian lineages in the genetic ancestry of modern humands, Am J Hum Genet, 60, 772
  6. Hawley, 1995, HAPLO: a program using the EM algorithm to estimate the frequencies of multi-site haplotypes, J Hered, 86, 409, 10.1093/oxfordjournals.jhered.a111613 · DOI · Paper page
  7. Heckerman, 2000, Dependency networks for inference, collaborative filtering, and data visualization, J Machine Learning Res, 1, 49
  8. Hodge, 1999, Loss of information due to ambiguous haplotyping of SNPs, Nat Genet, 21, 360, 10.1038/7687 · DOI
  9. Kimmel, 1998, Signatures of population expansion in microsatellite repeat data, Genetics, 148, 1921, 10.1093/genetics/148.4.1921 · DOI · Paper page
  10. Kuhner, 2000, Sampling among haplotype resolutions in a coalescent-based genealogy sampler, Genet Epidemiol Suppl, 19, S15, 10.1002/1098-2272(2000)19:1+<::AID-GEPI3>3.0.CO;2-V · doi:10.1002/1098-2272(2000)19:1+<::aid-gepi3>3.0.co;2-v
  11. Kuhner, 2000, Maximum likelihood estimation of recombination rates from population data, Genetics, 156, 1393, 10.1093/genetics/156.3.1393 · DOI · Paper page
  12. Long, 1995, An E-M algorithm and testing strategy for multiple locus haplotypes, Am J Hum Genet, 56, 799
  13. Nickerson, 1998, DNA sequence diversity in a 9.7-kb region of the human lipoprotein lipase gene, Nat Genet, 19, 233, 10.1038/907 · DOI · Paper page
  14. Rieder, 1999, Sequence variation in the human angiotensin converting enzyme, Nat Genet, 22, 59, 10.1038/8760 · DOI · Paper page
  15. Risch, 1996, The future of genetics studies of complex human diseases, Science, 273, 1516, 10.1126/science.273.5281.1516 · DOI · Paper page
  16. Sobel, 1996, Descent graphs in pedigree analysis: applications to haplotyping, location scores, and marker sharing statistics, Am J Hum Genet, 58, 1323
  17. Stephens, 2000, Dealing with label-switching in mixture models, J R Stat Soc B, 62, 795, 10.1111/1467-9868.00265 · DOI · Paper page
  18. Stephens, 2000, Inference in molecular population genetics, J R Stat Soc B, 62, 605, 10.1111/1467-9868.00254 · DOI · Paper page
  19. Watterson, 1977, Reversibility and the age of an allele II: two-allele models, with selection and mutation, Theor Popul Biol, 12, 179, 10.1016/0040-5809(77)90041-7 · DOI

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Metadata

Authors
Stephens, M., Smith, N. J., & Donnelly, P.
Venue
The American Journal of Human Genetics
Publisher
Elsevier BV
Published
2001-04
Volume
68
Issue
4
Pages
978-989
ISSN
0002-9297 (ISSN-L)
OpenAlex
W2110755408
Cited by
7,493
References
2
FWCI
82.13
Type
journal article
Language
en
Open access
bronze
Licence

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CoChat. (2026). Citation check: A New Statistical Method for Haplotype Reconstruction from Population Data. https://app.cochat.ai/papers/10.1086/319501
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Stephens, M., Smith, N. J., & Donnelly, P. (2001). A New Statistical Method for Haplotype Reconstruction from Population Data. The American Journal of Human Genetics. https://doi.org/10.1086/319501

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