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PROMO: detection of known transcription regulatory elements using species-tailored searches
Open accessAbstract
Summary: We have developed a set of tools to construct positional weight matrices from known transcription factor binding sites in a species or taxon-specific manner, and to search for matches in DNA sequences. Availability: PROMO can be accessed online at http://www.lsi.upc.es/~alggen under the research link. Supplementary information: An example of the graphic interface (Figure 1) can be visualized at http://www.lsi.upc.es/~alggen/recerca/promo/figuraBioinformatics.html. Contact: peypoch@lsi.upc.es; m.alba@ucl.ac.uk * To whom correspondence should be addressed.
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Cited by
Sarachana, T., Xu, M., Wu, R.-C., & Hu, V. W. (2011) · PLoS ONE · doi:10.1371/journal.pone.0017116 · Cited by 227
Ren, Y., Jia, H.-H., Xu, Y.-Q., Zhou, X., Zhao, X.-H., Wang, Y.-F., Song, X., Zhu, Z.-Y., Sun, T., Dou, Y., et al. (2018) · Molecular Cancer · doi:10.1186/s12943-018-0758-4 · Cited by 217
Karnowski, A., Chevrier, S., Belz, G. T., Mount, A., Emslie, D., D’Costa, K., Tarlinton, D. M., Kallies, A., & Corcoran, L. M. (2012) · Journal of Experimental Medicine · doi:10.1084/jem.20111504 · Cited by 206
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Yang, G., Buhrlage, S. J., Tan, L., Liu, X., Chen, J., Xu, L., Tsakmaklis, N., Chen, J. G., Patterson, C. J., Brown, J. R., et al. (2016) · Blood · doi:10.1182/blood-2016-01-695098 · Cited by 135
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Yu, J., Zhu, C., Wang, X., Kim, K., Bartolome, A., Dongiovanni, P., Yates, K. P., Valenti, L., Carrer, M., Sadowski, T., et al. (2021) · Science Translational Medicine · doi:10.1126/scitranslmed.abe1692 · Cited by 132
Metadata
- Authors
- Messeguer, X., Escudero, R., Farré, D., Núñez, O., Martı́nez, J., & Albà, M. M.
- Venue
- Bioinformatics
- Publisher
- Oxford University Press (OUP)
- Published
- 2002-02-01
- Volume
- 18
- Issue
- 2
- Pages
- 333-334
- ISSN
- 1367-4803 (ISSN-L)
- 1367-4811
- OpenAlex
- W2116102471
- Cited by
- 1,369
- References
- 0
- FWCI
- 0.97
- Type
- journal article
- Language
- en
- Open access
- bronze
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- Messeguer, X., Escudero, R., Farré, D., Núñez, O., Martı́nez, J., & Albà, M. M. (2002). PROMO: detection of known transcription regulatory elements using species-tailored searches. Bioinformatics. https://doi.org/10.1093/bioinformatics/18.2.333
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