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MHCBN: a comprehensive database of MHC binding and non-binding peptides
Abstract
Summary: MHCBN is a comprehensive database of Major Histocompatibility Complex (MHC) binding and non-binding peptides compiled from published literature and existing databases. The latest version of the database has 19 777 entries including 17 129 MHC binders and 2648 MHC non-binders for more than 400 MHC molecules. The database has sequence and structure data of (a) source proteins of peptides and (b) MHC molecules. MHCBN has a number of web tools that include: (i) mapping of peptide on query sequence; (ii) search on any field; (iii) creation of data sets; and (iv) online data submission. The database also provides hypertext links to major databases like SWISS-PROT, PDB, IMGT/HLA-DB, GenBank and PUBMED. Availability: MHCBN is available at http://www.imtech.res.in/raghava/mhcbn/. It’s SRS version is available from http://srs.ebi.ac.uk/ Contact: raghava@imtech.res.in Supplementary information: http://www.imtech.res.in/raghava/mhcbn/supl/ * To whom correspondence should be addressed.
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Citations
Cited by
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Sidney, J., Peters, B., Frahm, N., Brander, C., & Sette, A. (2008) · BMC Immunology · doi:10.1186/1471-2172-9-1 · Cited by 775
ProPred1: prediction of promiscuous MHC Class-I binding sites
Singh, H., & Raghava, G. P. S. (2003) · Bioinformatics · doi:10.1093/bioinformatics/btg108 · Cited by 441
Self-citationPrediction of CTL epitopes using QM, SVM and ANN techniques
Bhasin, M., & Raghava, G. P. S. (2004) · Vaccine · doi:10.1016/j.vaccine.2004.02.005 · Cited by 384
Self-citationA Community Resource Benchmarking Predictions of Peptide Binding to MHC-I Molecules
Peters, B., Bui, H.-H., Frankild, S., Nielsen, M., Lundegaard, C., Kostem, E., Basch, D., Lamberth, K., Harndahl, M., Fleri, W., et al. (2006) · PLoS Computational Biology · doi:10.1371/journal.pcbi.0020065 · Cited by 288
PepBank - a database of peptides based on sequence text mining and public peptide data sources.
Shtatland, T., Guettler, D., Kossodo, M., Pivovarov, M., & Weissleder, R. (2007) · BMC Bioinformatics · doi:10.1186/1471-2105-8-280 · Cited by 181
Metadata
- Authors
- Bhasin, M., Singh, H., & Raghava, G. P. S.
- Venue
- Bioinformatics
- Publisher
- Oxford University Press (OUP)
- Published
- 2003-03-22
- Volume
- 19
- Issue
- 5
- Pages
- 665-666
- ISSN
- 1367-4803 (ISSN-L)
- 1367-4811
- OpenAlex
- W2150383532
- Cited by
- 201
- References
- 0
- FWCI
- 5.47
- Type
- journal article
- Language
- en
- Open access
- closed
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- Bhasin, M., Singh, H., & Raghava, G. P. S. (2003). MHCBN: a comprehensive database of MHC binding and non-binding peptides. Bioinformatics. https://doi.org/10.1093/bioinformatics/btg055
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