The DOI matches its Crossref record; 2 of the 2 references it cites were found in a registry or an index.
The binding interface database (BID): a compilation of amino acid hot spots in protein interfaces
Open accessAbstract
Summary: To make information about protein interactive function easily accessible, we are mining the primary scientific literature for detailed data about protein interfaces. The Binding Interface Database (BID) organizes the vast amount of protein interaction information into tables, graphical contact maps and descriptive functional profiles. Currently data on 170 interacting protein pairs are available with over 1300 mutations described. Availability: The BID database is freely available at http://tsailab.org/BID/ To have your protein of interest entered, contact Tiffany Fischer (tiffbrink@neo.tamu.edu) or Jerry Tsai at the email below Contact: JerryTsai@TAMU.edu * To whom correspondence should be addressed.
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Citations
Cites
Anatomy of hot spots in protein interfaces
Bogan, A. A., & Thorn, K. S. (1998) · Journal of Molecular Biology · doi:10.1006/jmbi.1998.1843 · Cited by 1,988
Unraveling hot spots in binding interfaces: progress and challenges
DeLano, W. L. (2002) · Current Opinion in Structural Biology · doi:10.1016/s0959-440x(02)00283-x · Cited by 767
Cited by
Predicting Protein–Protein Interactions from the Molecular to the Proteome Level
Keskin, O., Tuncbag, N., & Gursoy, A. (2016) · Chemical Reviews · doi:10.1021/acs.chemrev.5b00683 · Cited by 369
Tuncbag, N., Gursoy, A., Nussinov, R., & Keskin, O. (2011) · Nature Protocols · doi:10.1038/nprot.2011.367 · Cited by 263
Blazer, L. L., & Neubig, R. R. (2009) · Neuropsychopharmacology · doi:10.1038/npp.2008.151 · Cited by 197
AB ‐Bind: Antibody binding mutational database for computational affinity predictions
Sirin, S., Apgar, J. R., Bennett, E. M., & Keating, A. E. (2016) · Protein Science · doi:10.1002/pro.2829 · Cited by 179
Lise, S., Archambeau, C., Pontil, M., & Jones, D. T. (2009) · BMC Bioinformatics · doi:10.1186/1471-2105-10-365 · Cited by 107
“Nonetheless, for completeness we have extracted from BID our own data set and tested our method on it.”
Method
Metadata
- Authors
- Fischer, T. B., Arunachalam, K. V., Bailey, D., Mangual, V., Bakhru, S., Russo, R., Huang, D., Paczkowski, M., Lalchandani, V., Ramachandra, C., Ellison, B., Galer, S., Shapley, J., Fuentes, E., & Tsai, J.
- Venue
- Bioinformatics
- Publisher
- Oxford University Press (OUP)
- Published
- 2003-07-22
- Volume
- 19
- Issue
- 11
- Pages
- 1453-1454
- ISSN
- 1367-4803 (ISSN-L)
- 1367-4811
- OpenAlex
- W2168164063
- Cited by
- 164
- References
- 2
- FWCI
- 0.64
- Type
- journal article
- Language
- en
- Open access
- bronze
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- CoChat. (2026). Citation check: The binding interface database (BID): a compilation of amino acid hot spots in protein interfaces. https://app.cochat.ai/papers/10.1093/bioinformatics/btg163
- The paper
- Fischer, T. B., Arunachalam, K. V., Bailey, D., Mangual, V., Bakhru, S., Russo, R., Huang, D., Paczkowski, M., Lalchandani, V., Ramachandra, C., Ellison, B., Galer, S., Shapley, J., Fuentes, E., & Tsai, J. (2003). The binding interface database (BID): a compilation of amino acid hot spots in protein interfaces. Bioinformatics. https://doi.org/10.1093/bioinformatics/btg163
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