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MAVisto: a tool for the exploration of network motifs
Open accessAbstract
UNLABELLED: MAVisto is a tool for the exploration of motifs in biological networks. It provides a flexible motif search algorithm and different views for the analysis and visualization of network motifs. These views help to explore interesting motifs: the frequency of motif occurrences can be compared with randomized networks, a list of motifs along with information about structure and number of occurrences depending on the reuse of network elements shows potentially interesting motifs, a motif fingerprint reveals the overall distribution of motifs of a given size and the distribution of a particular motif in the network can be visualized using an advanced layout algorithm. AVAILABILITY: MAVisto is platform independent and available free of charge as a Java webstart application at http://mavisto.ipk-gatersleben.de/ CONTACT: schwoebb@ipk-gatersleben.de SUPPLEMENTARY INFORMATION: Can be found at http://mavisto.ipk-gatersleben.de/
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Network motifs: simple building blocks of complex networks.
Milo, R., Shen-Orr, S., Itzkovitz, S., Kashtan, N., Chklovskii, D., & Alon, U. (2002) · Science · doi:10.1126/science.298.5594.824 · Cited by 7,368
Cited by
FANMOD: a tool for fast network motif detection
Wernicke, S., & Rasche, F. (2006) · Bioinformatics · doi:10.1093/bioinformatics/btl038 · Cited by 745
Acoustic sequences in non‐human animals: a tutorial review and prospectus
Kershenbaum, A., Blumstein, D. T., Roch, M. A., Akçay, Ç., Backus, G., Bee, M. A., Bohn, K., Cao, Y., Carter, G., Cäsar, C., et al. (2016) · Biological Reviews · doi:10.1111/brv.12160 · Cited by 337
The 2017 IEEE International Conference on Fuzzy Systems
(2016) · IEEE Computational Intelligence Magazine · doi:10.1109/mci.2016.2545826 · Cited by 308
Huang, C.-H., Tsai, J. J. P., Kurubanjerdjit, N., & Ng, K.-L. (2019) · doi:10.1101/536318 · Cited by 4
Metadata
- Authors
- Schreiber, F., & Schwobbermeyer, H.
- Venue
- Bioinformatics
- Publisher
- Oxford University Press (OUP)
- Published
- 2005-07-14
- Volume
- 21
- Issue
- 17
- Pages
- 3572-3574
- ISSN
- 0266-7061 (ISSN-L)
- 1367-4803
- 1460-2059
- OpenAlex
- W2144636447
- Cited by
- 209
- References
- 1
- FWCI
- 2.19
- Type
- journal article
- Language
- en
- Open access
- bronze
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