UniRef: comprehensive and non-redundant UniProt reference clusters

Cited by (1,003)

Items 501–600 of 1,003

1. Primary sequence contribution to the optical function of the eye lens
   K. Mahendiran, C. Elie, Jean‐Christophe Nebel, Ali J. Ryan, Barbara Krystyna Pierscionek · 2014 · Scientific Reports
2. Genomic organization of duplicated short wave-sensitive and long wave-sensitive opsin genes in the green swordtail, Xiphophorus helleri
   Corey T. Watson, Krzysztof P. Lubieniecki, Ellis R. Loew, William S. Davidson, Felix J. Breden · 2010 · BMC Evolutionary Biology
3. Next Generation Protein Structure Predictions and Genetic Variant Interpretation
   Diwan, Gaurav D., Gonzalez-Sanchez, Juan Carlos, Apic, Gordana, Russell, Robert B. · 2021 · Journal of Molecular Biology
4. Accurately identifying nucleic-acid-binding sites through geometric graph learning on language model predicted structures
   Yidong Song, Qianmu Yuan, Huiying Zhao, Yuedong Yang · 2023 · Briefings in Bioinformatics
5. Recent Advances and Challenges in Protein Structure Prediction
   Chunxiang Peng, Fang Liang, Yuhao Xia, Kailong Zhao, Minghua Hou, Guijun Zhang · 2023 · Journal of Chemical Information and Modeling
6. Advances in phage–host interaction prediction: in silico method enhances the development of phage therapies
   Wanchun Nie, Tianyi Qiu, Yiwen Wei, Hao Ding, Zhixiang Guo, Jingxuan Qiu · 2024 · Briefings in Bioinformatics
7. Sparse autoencoders uncover biologically interpretable features in protein language model representations
   Onkar Singh Gujral, Mihir Bafna, Eric J. Alm, Bonnie Berger · 2025 · Proceedings of the National Academy of Sciences
8. ProtDet-CCH: Protein Remote Homology Detection by Combining Long Short-Term Memory and Ranking Methods
   Bin Liu, Shumin Li · 2018 · IEEE Transactions on Computational Biology and Bioinformatics
9. Metagenome Mining Reveals Hidden Genomic Diversity of Pelagimyophages in Aquatic Environments
   Asier Zaragoza-Solas, Francisco Rodríguez‐Valera, Mario López‐Pérez · 2020 · mSystems
10. A Computational Screen for Type I Polyketide Synthases in Metagenomics Shotgun Data
    Konrad U. Förstner, Tobias Doerks, Christopher J. Creevey, Anja Doerks, Peer Bork B · 2008 · PLoS ONE
11. Genome-Wide Analyses Reveal Genes Subject to Positive Selection in Pasteurella multocida
    Peili Cao, Dongchun Guo, Jiasen Liu, Qian Jiang, Zhuofei Xu, Liandong Qu · 2017 · Frontiers in Microbiology
12. Parameter-efficient fine-tuning on large protein language models improves signal peptide prediction
    Shuai Zeng, Duolin Wang, Lei Jiang, Dong He Xu · 2024 · Genome Research
13. SparkSW: Scalable Distributed Computing System for Large-Scale Biological Sequence Alignment
    Guoguang Zhao, Cheng Ling, Donghong Sun · 2015 · IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing (CCGrid)
14. Complete Genome Sequence of the Thermophilic Bacterium Geobacillus thermoleovorans CCB_US3_UF5
    Muhd Khairul Luqman Muhd Sakaff, Amirah Rahman, J. Saito, Shaobin Hou, Mukhtar Alam · 2012 · Journal of Bacteriology
15. Structural and Functional Analysis of the Tandem β-Zipper Interaction of a Streptococcal Protein with Human Fibronectin
    Nicole C. Norris, Richard J. Bingham, Gemma Harris, Adrian Speakman, Richard Jones, Andrew Leech, J.P. Turkenburg, Jennifer R. Potts · 2011 · Journal of Biological Chemistry
16. The genome of the intracellular bacterium of the coastal bivalve, Solemya velum: a blueprint for thriving in and out of symbiosis
    Oleg Dmytrenko, Shelbi L. Russell, Wesley T. Loo, Kristina M. Fontanez, Li Liao, Guus Roeselers, Raghav Sharma, Frank J. Stewart, Irene L. G. Newton, Tanja Woyke et al. · 2014 · BMC Genomics
17. Identification of Natural CRISPR Systems and Targets in the Human Microbiome
    Philipp C. Münch, Eric A. Franzosa, Bärbel Stecher, Alice Carolyn McHardy, Curtis Huttenhower · 2020 · Cell Host & Microbe
18. Closely related Lak megaphages replicate in the microbiomes of diverse animals
    Marco A. Crisci, Lin-Xing Chen, Audra E. Devoto, Adair L. Borges, Nicola Bordin, Rohan Sachdeva, Adrian Tett, Allison M. Sharrar, Nicola Segata, Francesco Debenedetti et al. · 2021 · iScience
19. T4SEfinder: a bioinformatics tool for genome-scale prediction of bacterial type IV secreted effectors using pre-trained protein language model
    Yumeng Zhang, Yangming Zhang, Yi Xiong, Hui Wang, Zixin Deng, Jiangning Song, Hong‐Yu Ou · 2021 · Briefings in Bioinformatics
20. Long-Read-Resolved, Ecosystem-Wide Exploration of Nucleotide and Structural Microdiversity of Lake Bacterioplankton Genomes
    Y. Okazaki, S. Nakano, A. Toyoda, H. Tamaki · 2022 · bioRxiv
21. Towards completion of the Earth's proteome
    Carolina Perez‐Iratxeta, Gareth Palidwor, Miguel Angel Andrade-Navarro · 2007 · EMBO Reports
22. Bio4j: a high-performance cloud-enabled graph-based data platform
    Pablo Pareja-Tobes, Raquel Tobes, Marina Manrique, Eduardo Pareja, Eduardo Pareja-Tobes · 2015 · bioRxiv (Cold Spring Harbor Laboratory)
23. Modularity and diversity of target selectors in Tn7 transposons
    Guilhem Faure, Makoto Saito, Sean Benler, Iris Peng, Yuri I. Wolf, Jonathan G. Strecker, Han Altae-Tran, Edwin N. Neumann, David Li, Kira S. Makarova et al. · 2023 · Molecular Cell
24. MSV3d: database of human MisSense variants mapped to 3D protein structure
    Tien Dao Luu, A.-M. Rusu, Vonn Walter, Raymond Ripp, Luc Moulinier, Jean Muller, Thierry Toursel, Julie Thompson, Olivier Poch, Hoan Nguyen · 2012 · Database
25. Proteomic Stable Isotope Probing Reveals Biosynthesis Dynamics of Slow Growing Methane Based Microbial Communities
    Jeffrey J. Marlow, Connor T. Skennerton, Zhou Li, Karuna Chourey, Robert L. Hettich, Chongle Pan, Victoria J. Orphan · 2016 · Frontiers in Microbiology
26. Exploring Short Linear Motifs Using the ELM Database and Tools
    Marc Gouw, Hugo Sámano‐Sánchez, Kim Van Roey, Francesca Diella, Toby J. Gibson, Holger Dinkel · 2017 · Current Protocols in Bioinformatics
27. Agricultural Freshwater Pond Supports Diverse and Dynamic Bacterial and Viral Populations
    Jessica Chopyk, Sarah M. Allard, Daniel J. Nasko, Anthony Q. Bui, Emmanuel F. Mongodin, Amy Rebecca Sapkota · 2018 · Frontiers in Microbiology
28. In-Pero: Exploiting Deep Learning Embeddings of Protein Sequences to Predict the Localisation of Peroxisomal Proteins
    Marco Anteghini, Vítor A. P. Martins dos Santos, Edoardo Saccenti · 2021 · International Journal of Molecular Sciences
29. IAV-CNN: A 2D Convolutional Neural Network Model to Predict Antigenic Variants of Influenza A Virus
    Rui Yin, Nyi Nyi Thwin, Pei Zhuang, Yu Zhang, Zhuoyi Lin, Chee Keong Kwoh · 2021 · IEEE Transactions on Computational Biology and Bioinformatics
30. Leave no stone unturned: individually adapted xerotolerant Thaumarchaeota sheltered below the boulders of the Atacama Desert hyperarid core
    Yunha Hwang, Dirk Schulze‐Makuch, Felix L. Arens, Johan S. Sáenz, Panagiotis S. Adam, Christof Sager, Till L. V. Bornemann, Weishu Zhao, Ying Zhang, Alessandro Airo et al. · 2021 · Microbiome
31. The gut microbiome modifies the associations of short- and long-term physical activity with body weight changes
    Kai Wang, Raaj S. Mehta, Wenjie Ma, Long Hoang Nguyen, Dong D. Wang, Andrew R. Ghazi, Yan Yan, Laila Al‐Shaar, Yiqing Wang, Dong Hang et al. · 2023 · Microbiome
32. Gentle Masking of Low-Complexity Sequences Improves Homology Search
    Martin C. Frith · 2011 · PLoS ONE
33. Description of Trichococcus ilyis sp. nov. by combined physiological and in silico genome hybridization analyses
    Nikolaos Strepis, Irene Sánchez‐Andrea, Antonie H. van Gelder, Henri van Kruistum, Nicole Shapiro, Nikos C. Kyrpides, Markus Göker, Hans‐Peter Klenk, Peter J. Schaap, Alfons J. M. Stams et al. · 2016 · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
34. Rhipicephalus (Boophilus) microplus
    Marcelo de Campos Pereira, Marcelo B. Labruna · 2008
35. Proteus: a random forest classifier to predict disorder-to-order transitioning binding regions in intrinsically disordered proteins
    Sankar Basu, Fredrik Söderquist, Björn Wallner · 2017 · Journal of Computer-Aided Molecular Design
36. mBLAST: Keeping up with the Sequencing Explosion for (Meta) Genome Analysis
    Curtis Davis · 2013 · Journal of Data Mining in Genomics & Proteomics
37. Markov random fields reveal an N-terminal double beta-propeller motif as part of a bacterial hybrid two-component sensor system
    Matt Menke, Bonnie Berger, Lenore Cowen · 2010 · Proceedings of the National Academy of Sciences
38. The Source and Evolutionary History of a Microbial Contaminant Identified Through Soil Metagenomic Analysis
    M. Olm, C. Butterfield, A. Copeland, T. C. Boles, B. Thomas, J. Banfield · 2017 · mBio
39. Complete Genome of Achalarus lyciades, The First Representative of the Eudaminae Subfamily of Skippers
    Jinhui Shen, Qian Cong, Dominika Borek, Zbyszek Otwinowski, Nick V. Grishin · 2017 · Current Genomics
40. A Portion of the Apomixis Locus of Paspalum Simplex is Microsyntenic with an Unstable Chromosome Segment Highly Conserved Among Poaceae
    Giulio Galla, Lorena Siena, Juan Pablo A. Ortiz, Helmut Bäumlein, Gianni Barcaccia, Silvina C. Pessino, Michele Bellucci, Fulvio Pupilli · 2019 · Scientific Reports
41. In silico analysis of nonsynonymous single‐nucleotide polymorphisms (nsSNPs) of the SMPX gene
    Md. Arifuzzaman, Sarmistha Mitra, Raju Das, Amir Hamza, Nurul Absar, Raju Dash · 2019 · Annals of Human Genetics
42. Signal-3L 3.0: Improving Signal Peptide Prediction through Combining Attention Deep Learning with Window-Based Scoring
    Wei-Xun Zhang, Xiaoyong Pan, Hong‐Bin Shen · 2020 · Journal of Chemical Information and Modeling
43. Genetic diversity in terrestrial subsurface ecosystems impacted by geological degassing
    Till L. V. Bornemann, Panagiotis S. Adam, Victoria Turzynski, Ulrich Schreiber, Perla Abigail Figueroa-Gonzalez, Janina Rahlff, Daniel Köster, Torsten Claus Schmidt, Ralf Schunk, Bernhard Krauthausen et al. · 2022 · Nature Communications
44. Prediction and Prioritization of Rare Oncogenic Mutations in the Cancer Kinome Using Novel Features and Multiple Classifiers
    U ManChon, Eric Talevich, Samiksha Katiyar, Khaled Rasheed, Natarajan Kannan · 2014 · PLoS Computational Biology
45. Medium-sized protein language models perform well at transfer learning on realistic datasets
    Vieira, Luiz C., Handojo, Morgan L., Wilke, Claus O. · 2025 · Scientific Reports
46. SpatialPPI: Three-dimensional space protein-protein interaction prediction with AlphaFold Multimer
    2024
47. pH and thiosulfate dependent microbial sulfur oxidation strategies across diverse environments
    Lauren E. Twible, Kelly J. Whaley-Martin, Lin-Xing Chen, Tara Colenbrander Nelson, James L.S. Arrey, Chad V. Jarolimek, Josh J. King, Lisa Ramilo, Helga Sonnenberg, Jillian F. Banfield et al. · 2024 · Frontiers in Microbiology
48. An ensemble deep learning model for predicting minimum inhibitory concentrations of antimicrobial peptides against pathogenic bacteria
    Chia‐Ru Chung, Chung-Yu Chien, Yun Tang, Li-Ching Wu, Justin Bo‐Kai Hsu, Jang‐Jih Lu, Tzong-Yi Lee, Chen Bai, Jorng‐Tzong Horng · 2024 · iScience
49. Profiling lateral gene transfer events in the human microbiome using WAAFLE
    Tiffany Y. Hsu, Étienne Nzabarushimana, Dennis H.-J. Wong, Chengwei Luo, Robert Gerald Beiko, Morgan G. I. Langille, Curtis Huttenhower, Long Hoang Nguyen, Eric A. Franzosa · 2025 · Nature Microbiology
50. A potential in silico antibody–antigen based diagnostic test for precise identification of Acinetobacter baumannii
    Mohammad Reza Rahbar, Iraj Rasooli, Seyed Latif Mousavi Gargari, Gunnar Sandström, Jafar Amani, Yaser Fattahian, Abolfazl Jahangiri, Marziyeh Jalali · 2011 · Journal of Theoretical Biology
51. The Interaction of RNA Helicase DDX3 with HIV-1 Rev-CRM1-RanGTP Complex during the HIV Replication Cycle
    Seyed Hanif Mahboobi, Alex A. Javanpour, Mohammad R. K. Mofrad · 2015 · PLoS ONE
52. New Tricks for “Old” Domains: How Novel Architectures and Promiscuous Hubs Contributed to the Organization and Evolution of the ECM
    Graham L. Cromar, Ka‐Chun Wong, Noeleen B. Loughran, Tuan On, Hongyan Song, Xuejian Xiong, Zhaolei Zhang, John Parkinson · 2014 · Genome Biology and Evolution
53. Cross‐species transferability of SSR loci developed from transciptome sequencing in lodgepole pine
    Mark R. Lesser, Thomas Lee Parchman, C. Alex Buerkle · 2011 · Molecular Ecology Resources
54. ECDomainMiner: discovering hidden associations between enzyme commission numbers and Pfam domains
    Seyed Ziaeddin Alborzi, Marie‐Dominique Devignes, David W. Ritchie · 2017 · BMC Bioinformatics
55. In silico analyses of deleterious missense SNPs of human apolipoprotein E3
    Állan S. Pires, William Farias Porto, Octávio Luiz Franco, Sérgio Amorim de Alencar · 2017 · Scientific Reports
56. Ceratocystis cacaofunesta genome analysis reveals a large expansion of extracellular phosphatidylinositol-specific phospholipase-C genes (PI-PLC)
    Eddy Molano, Odalys Cabrera, Juliana José, Leandro Costa do Nascimento, Marcelo Falsarella Carazzolle, Paulo José Pereira Lima Teixeira, J. Alvarez, Ricardo Tibúrcio, Paulo Massanari Tokimatu Filho, G.M.A. Lima et al. · 2018 · BMC Genomics
57. Functional diversity of microbial ecologies estimated from ancient human coprolites and dental calculus
    David K. Jacobson, Tanvi P. Honap, Cara Monroe, Justin R. Lund, Brett A. Houk, Anna C. Novotny, Cynthia Robin, Elisabetta Marini, Cecil M. Lewis · 2020 · Philosophical Transactions of the Royal Society B Biological Sciences
58. KinOrtho: a method for mapping human kinase orthologs across the tree of life and illuminating understudied kinases
    Liang‐Chin Huang, Rahil Taujale, Nathan Gravel, Aarya Venkat, Wayland Yeung, Dominic P. Byrne, Patrick A. Eyers, Natarajan Kannan · 2021 · BMC Bioinformatics
59. Phage-encoded ribosomal protein S21 expression is linked to late-stage phage replication
    Lin-Xing Chen, Alexander L. Jaffe, Adair L. Borges, Petar I. Penev, Tara Colenbrander Nelson, Lesley A. Warren, Jillian F. Banfield · 2022 · ISME Communications
60. Computational analyses and prediction of guanylin deleterious SNPs
    William Farias Porto, Octávio Luiz Franco, Sérgio Amorim de Alencar · 2015 · Peptides
61. Frameshift alignment: statistics and post-genomic applications
    Sergey L. Sheetlin, Yonil Park, Martin C. Frith, John L. Spouge · 2014 · Bioinformatics
62. Intensive herbicide use has selected for constitutively elevated levels of stress‐responsive mRNAs and proteins in multiple herbicide‐resistant Avena fatua L
    Barbara K. Keith, Erin E. Burns, Brian B. Bothner, Charles C. Carey, Aurélien Mazurie, Jonathan K. Hilmer, Sezgi Biyiklioglu, Hikmet Budak, William E. Dyer · 2017 · Pest Management Science
63. Complete Genome Sequence of Rhodobacter sphaeroides KD131
    Si‐Kyu Lim, Sang Jun Kim, Sun Ho Cha, You‐Kwan Oh, Hae-Jin Rhee, Mi-Sun Kim, Jeong K. Lee · 2008 · Journal of Bacteriology
64. Single Layers of Attention Suffice to Predict Protein Contacts
    Nicholas Bhattacharya, Neil Thomas, Roshan Rao, Justas Dauparas, Peter K. Koo, David A. Baker, Yun S. Song, Sergey Ovchinnikov · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
65. Robustly interrogating machine learning-based scoring functions: what are they learning?
    Guy Durant, Fergus Boyles, Kristian Birchall, Brian D. Marsden, Charlotte Mary Deane · 2025 · Bioinformatics
66. Novel insights into the insect trancriptome response to a natural DNA virus
    Seanna J. McTaggart, Tidbury Hannah, Stephen Bridgett, Jennie S. Garbutt, Gaganjot Kaur, Mike Boots · 2015 · BMC Genomics
67. Genomic comparison of Trypanosoma conorhini and Trypanosoma rangeli to Trypanosoma cruzi strains of high and low virulence
    Katie R. Bradwell, Vishal N. Kopardé, Andrey V. Matveyev, Myrna G. Serrano, João M. P. Alves, Hardik I. Parikh, Bernice Huang, Vladimir Lee, Oneida Espinosa-Álvarez, Paola A. Ortíz et al. · 2018 · BMC Genomics
68. Functional expression and characterization of the envelope glycoprotein E1E2 heterodimer of hepatitis C virus
    Longxing Cao, Bowen Yu, Dandan Kong, Qian Cong, Yu Tao, Zibo Chen, Zhenzheng Hu, Haishuang Chang, Jin Zhong, David A. Baker et al. · 2019 · PLoS Pathogens
69. Genomic convergence between Akkermansia muciniphila in different mammalian hosts
    Geerlings, Sharon Y., Ouwerkerk, Janneke P., Koehorst, Jasper J., Ritari, Jarmo, Aalvink, Steven, Stecher, Bärbel, Schaap, Peter J., Paulin, Lars, de Vos, Willem M., Belzer, Clara · 2021 · BMC Microbiology
70. Comparison of tertiary structures of proteins in protein-protein complexes with unbound forms suggests prevalence of allostery in signalling proteins
    Lakshmipuram S. Swapna, Swapnil Mahajan, Alexandre G. de Brevern, Narayanaswamy Srinivasan · 2012 · BMC Structural Biology
71. Origins of Myc Proteins – Using Intrinsic Protein Disorder to Trace Distant Relatives
    Amir Mahani, Johan Henriksson, Anthony P. H. Wright · 2013 · PLoS ONE
72. A Nitrile Hydratase in the Eukaryote Monosiga brevicollis
    Konrad U. Förstner, Tobias Doerks, Jean Muller, Jeroen Raes, Peer Bork B · 2008 · PLoS ONE
73. Bioinformatics
    David Edwards, Jason Stajich, David T. Hansen · 2009 · Springer eBooks
74. The Comprehensive Phytopathogen Genomics Resource: a web-based resource for data-mining plant pathogen genomes
    John P. Hamilton, Eric C Neeno-Eckwall, Bishwo N. Adhikari, Nicole T. Perna, Ned A. Tisserat, Jan E. Leach, C. André Lévesque, C. Robin Buell · 2011 · Database
75. Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction
    Shitong Luo, Yufeng Su, Zuofan Wu, Chenpeng Su, Jian Peng, Jianzhu Ma · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
76. Lab-in-the-loop therapeutic antibody design with deep learning
    Nathan C. Frey, I. Hötzel, S. Stanton, Ryan L Kelly, R. Alberstein, Emily K. Makowski, Karolis Martinkus, Daniel Berenberg, J. Bevers, Tyler Bryson et al. · 2025 · bioRxiv
77. Protein embeddings improve phage-host interaction prediction
    Mark Edward M. Gonzales, Jennifer C. Ureta, Anish Man Singh Shrestha · 2023 · PLoS ONE
78. Gut microbiome composition and metabolic activity in women with diverticulitis
    Wenjie Ma, Yiqing Wang, Long H. Nguyen, Raaj S. Mehta, Jane Ha, Amrisha Bhosle, Lauren J. Mclver, Mingyang Song, Clary B. Clish, Lisa L. Strate et al. · 2024 · Nature Communications
79. Protein-small molecule binding site prediction based on a pre-trained protein language model with contrastive learning
    Jue Wang, Yufan Liu, Boxue Tian · 2024 · Journal of Cheminformatics
80. Gut microbial metabolism of bile acids modifies the effect of Mediterranean diet interventions on cardiometabolic risk in a randomized controlled trial
    Peipei Gao, Ehud Rinott, Danyue Dong, Zhendong Mei, Fenglei Wang, Yuxi Liu, Omer Kamer, Anat Yaskolka Meir, Kieran Michael Tuohy, Matthias Blüher et al. · 2024 · Gut Microbes
81. Translational integrity and continuity: Personalized biomedical data integration
    Xiaoming Wang, Lili Liu, James D. Fackenthal, Shelly Cummings, Oluwatobi I. Olopade, Kisha T Hope, Jonathan C. Silverstein, Olufunmilayo Ibironke Olopade · 2008 · Journal of Biomedical Informatics
82. Transcriptome analysis of stress tolerance in entomopathogenic nematodes of the genus Steinernema
    Mor Yaari, Adi Doron‐Faigenboim, Hinanit Koltai, Liora Salame, I. Glazer · 2015 · International Journal for Parasitology
83. A NewN-Acyl Homoserine Lactone Synthase in an Uncultured Symbiont of the Red Sea Sponge Theonella swinhoei
    Maya Britstein, Giulia Devescovi, Kim M. Handley, Assaf Malik, Markus Haber, Kumar Saurav, Roberta Teta, Valeria Costantino, Ilia Burgsdorf, Jack A. Gilbert et al. · 2015 · Applied and Environmental Microbiology
84. Continuous pre- and post-transplant exposure to a disease-associated gut microbiome promotes hyper-acute graft-versus-host disease in wild-type mice
    Kate L Bowerman, Antiopi Varelias, Nancy Lachner, Rachel D. Kuns, Geoffrey R. Hill, Philip Hugenholtz · 2020 · Gut Microbes
85. Streamlined and Abundant Bacterioplankton Thrive in Functional Cohorts
    Rhiannon Mondav, Stefan Bertilsson, Moritz Buck, Silke Langenheder, Eva S. Lindström, Sarahi L. Garcia · 2020 · mSystems
86. Chemotaxis may assist marine heterotrophic bacterial diazotrophs to find microzones suitable for N2 fixation in the pelagic ocean
    Søren Hallstrøm, Jean‐Baptiste Raina, Martin D. Ostrowski, Donovan H. Parks, Gene W. Tyson, Philip Hugenholtz, Roman Stocker, Justin Robert Seymour, Lasse Riemann · 2022 · The ISME Journal
87. ACP-ADA: A Boosting Method with Data Augmentation for Improved Prediction of Anticancer Peptides
    Sadik Bhattarai, Kyu‐Sik Kim, Hilal Tayara, Kil To Chong · 2022 · International Journal of Molecular Sciences
88. Evolution study of the Baeyer–Villiger monooxygenases enzyme family: Functional importance of the highly conserved residues
    Joseph Rebehmed, Véronique Alphand, Véronique de Berardinis, Alexandre G. de Brevern · 2013 · Biochimie
89. Transcriptional analysis of genes involved in nodulation in soybean roots inoculated with Bradyrhizobium japonicumstrain CPAC 15
    Gesiele Almeida Barros de Carvalho, Jesiane Stefânia da Silva Batista, Francismar Corrêa Marcelino‐Guimarães, Leandro Costa do Nascimento, Mariangela Hungría · 2013 · BMC Genomics
90. Integrated Online System for a Pyrosequencing-Based Microbial Source Tracking Method that Targets Bacteroidetes 16S rDNA
    Tatsuya Unno, Doris Yoong Wen Di, Jeonghwan Jang, Yae-Seul Suh, Michael Jay Sadowsky, Hor-Gil Hur · 2011 · Environmental Science & Technology
91. RNA-seq analysis of the transcriptional response to blue and red light in the extremophilic red alga, Cyanidioschyzon merolae
    Mehmet Tardu, Ugur Meric Dikbas, İbrahim Barış, İbrahim Halil Kavaklı · 2016 · Functional & Integrative Genomics
92. Bioreactor microbial ecosystems with differentiated methanogenic phenol biodegradation and competitive metabolic pathways unraveled with genome-resolved metagenomics
    Feng Ju, Yubo Wang, Tong Zhang · 2018 · Biotechnology for Biofuels
93. Pioneering gut health improvements in piglets with phytogenic feed additives
    Sung Joon Yu, Andrew Morris, Advait Kayal, Ivan Milošević, Thi Thu Hao Van, Yadav Sharma Bajagai, Dragana Stanley · 2024 · Applied Microbiology and Biotechnology
94. Exploring the sequence fitness landscape of a bridge between protein folds
    Pengfei Tian, Robert B. Best · 2020 · PLoS Computational Biology
95. Sulfoquinovose is a widespread organosulfur substrate for Roseobacter clade bacteria in the ocean
    Le Liu, Xiaofeng Chen, Jianing Ye, Xiaoyi Ma, Han Yu, Yajie He, Kai Tang · 2023 · The ISME Journal
96. Functional consequences of transferrin receptor‐2 mutations causing hereditary hemochromatosis type 3
    Ricky S. Joshi, Maya Shvartsman, Erica Morán, Sergio Lois, Jessica Aranda, Anna Barqué, Xavier de la Cruz, Miquel Bruguera, José Manuel Vagace, Guillermo Gervasini et al. · 2015 · Molecular Genetics & Genomic Medicine
97. Analysis of Babesia bovis infection-induced gene expression changes in larvae from the cattle tick, Rhipicephalus (Boophilus) microplus
    Andrew M. Heekin, Felix David Guerrero, Kylie G. Bendele, Leo Saldivar, Glen A. Scoles, Cedric Gondro, Vishvanath M. Nene, Appolinaire Djikeng, Kelly A. Brayton · 2012 · Parasites & Vectors
98. CHOPIN: a web resource for the structural and functional proteome of Mycobacterium tuberculosis
    Bernardo Ochoa‐Montaño, Nishita Mohan, Tom L. Blundell · 2015 · Database
99. Prediction of G protein-coupled receptor encoding sequences from the synganglion transcriptome of the cattle tick, Rhipicephalus microplus
    Felix David Guerrero, Anastasia Kellogg, Alexandria Ogrey, Andrew M. Heekin, Roberto A. Barrero, M. Bellgard, Scot E. Dowd, Ming‐Ying Leung · 2016 · Ticks and Tick-borne Diseases
100. Multi-modal molecular determinants of clinically relevant osteoporosis subtypes
     Chunchun Yuan, Xiangtian Yu, Jing Wang, Bing Shu, Xiaoyun Wang, Chen Huang, Xia Lv, Qianqian Peng, Wen-Hao Qi, Jing Zhang et al. · 2024 · Cell Discovery