UniRef: comprehensive and non-redundant UniProt reference clusters

Suzek, Baris E., Huang, Hongzhan, McGarvey, Peter, Mazumder, Raja, Wu, Cathy H.·2007·Bioinformatics

Cited by (1,003)

Items 801–900 of 1,003

  1. Deep Ensemble Learning with Atrous Spatial Pyramid Networks for Protein Secondary Structure Prediction
    Yuzhi Guo, Jiaxiang Wu, Hehuan Ma, Sheng Wang, Junzhou Huang · 2022 · Biomolecules
  2. Predictive modeling of colorectal cancer using exhaustive analysis of microbiome information layers available from public metagenomic data
    Boštjan Murovec, Leon Deutsch, Blaž Stres · 2024 · Frontiers in Microbiology
  3. Hyperexpansion of genetic diversity and metabolic capacity of extremophilic bacteria and archaea in ancient Andean lake sediments
    María Ángeles Lezcano, T. Bornemann, L. Sánchez-García, D. Carrizo, P. Adam, S. Esser, N. Cabrol, Alexander J. Probst, V. Parro · 2024 · Microbiome
  4. Incorporating genetic load contributes to predicting Arabidopsis thaliana’s response to climate change
    Juan Jiang, Jia‐Fu Chen, Xin-Tong Li, Li Wang, Jian‐Feng Mao, Baosheng Wang, Ya‐Long Guo · 2025 · Nature Communications
  5. MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics
    Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Hannah Constance Wastyk, Joshua D. Evans, Justin Laine Sonnenburg · 2025 · mSystems
  6. UniProtKB amid the turmoil of plant proteomics research
    Michel Schneider, Sylvain Poux · 2012 · Frontiers in Plant Science
  7. Classifying Proteins into Functional Groups Based on All-versus-All BLAST of 10 Million Proteins
    Natali Kolker, Roger Higdon, William Broomall, Larissa I Stanberry, Dean Welch, Wei Lu, Winston A. Haynes, Roger Barga, Eugene Kolker · 2011 · OMICS A Journal of Integrative Biology
  8. M-ORBIS: Mapping of mOleculaR Binding sItes and Surfaces
    Laurent‐Philippe Albou, Olivier Poch, Dino Moras · 2010 · Nucleic Acids Research
  9. MScDB: A Mass Spectrometry-centric Protein Sequence Database for Proteomics
    Harald Marx, Simone Lemeer, Susan Klaeger, Thomas Rattei, Bernhard Küster · 2013 · Journal of Proteome Research
  10. Elaboration of Transcriptome During the Induction of Somatic Embryogenesis
    Elsa Góngora‐Castillo, Geovanny I. Nic-Can, Rosa María Galaz-Ávalos, Victor Manuel Loyola-Vargas · 2018 · Methods in molecular biology
  11. Structural analysis of missense mutations occurring in the DNA-binding domain of HSF4 associated with congenital cataracts
    Zaiyu Xiao, Ling Guo, Yang Zhang, Liwei Cui, Yujie Dai, Zhu Lan, Qinghua Zhang, Sheng Wang, Wei Liu · 2019 · Journal of Structural Biology X
  12. Exploring Mechanisms of Communication Switching in the Hsp90-Cdc37 Regulatory Complexes with Client Kinases through Allosteric Coupling of Phosphorylation Sites: Perturbation-Based Modeling and Hierarchical Community Analysis of Residue Interaction Networks
    Gabrielle Stetz, Lindy Astl, Gennady M. Verkhivker · 2020 · Journal of Chemical Theory and Computation
  13. Predicting the Disease Risk of Protein Mutation Sequences With Pre-training Model
    Kuan Li, Yue Zhong, Xuan Lin, Zhe Quan · 2020 · Frontiers in Genetics
  14. SPRoBERTa: protein embedding learning with local fragment modeling
    Lijun Wu, Chengcan Yin, Jinhua Zhu, Zhen Wu, Liang He, Yingce Xia, Shufang Xie, Tao Qin, Tie‐Yan Liu · 2022 · Briefings in Bioinformatics
  15. Temporal disturbance of a model stream ecosystem by high microbial diversity from treated wastewater
    Tom Lennard Stach, Guido Sieber, Manan Shah, Sophie A. Simon, André Soares, Till L. V. Bornemann, Julia Plewka, Julian Künkel, Christian Becker, Folker Meyer et al. · 2023 · MicrobiologyOpen
  16. Detecting duplicate biological entities using Shortest Path Edit Distance
    Alex Rudniy, Min Song, James Geller · 2010 · International Journal of Data Mining and Bioinformatics
  17. Renin mRNA is upregulated in testes and testicular cells in response to treatment with aflatoxin B1
    Kathleen J Austin, Rebecca Cockrum, A.M. Jons, Brenda M. Alexander, K. M. Cammack · 2011 · Theriogenology
  18. Single substitutions to closely related amino acids contribute to the functional diversification of an insect‐inducible, positively selected plant cystatin
    Asieh Rasoolizadeh, Marie‐Claire Goulet, Frank Sainsbury, Conrad Cloutier, Dominique Michaud · 2016 · FEBS Journal
  19. Databases for Wheat Genomics and Crop Improvement
    Yuxuan Yuan, Armin Scheben, Chon‐Kit Kenneth Chan, David Edwards · 2017 · Methods in molecular biology
  20. Unraveling the complex genome of Saccharum spontaneum using Polyploid Gene Assembler
    Leandro Costa do Nascimento, Karina Yanagui, Juliana José, Eduardo Leal Oliveira Camargo, Maria Carolina B. Grassi, Camila Pinto da Cunha, José Antonio Bressiani, Guilherme Mendes Almeida Carvalho, Carlos Roberto Carvalho, Paula Favoretti Vital do Prado et al. · 2019 · DNA Research
  21. Genome profiling of sterol synthesis shows convergent evolution in parasites and guides chemotherapeutic attack
    Matthias A. Fügi, Kapila Gunasekera, Torsten Ochsenreiter, Xue Li Guan, Markus Rene Wenk, Pascal Mäser · 2014 · Journal of Lipid Research
  22. Unique and Universal Features of Epsilonproteobacterial Origins of Chromosome Replication and DnaA-DnaA Box Interactions
    Pawel Jaworski, Rafał Donczew, Thorsten Mielke, Marcel Thiel, Stanisław Ołdziej, Christoph Weigel, Anna Magdalena Zawilak-Pawlik · 2016 · Frontiers in Microbiology
  23. The high-throughput gene prediction of more than 1,700 eukaryote genomes using the software package EukMetaSanity
    Christopher J. Neely, Sarah K. Hu, Harriet Alexander, Benjamin Tully · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
  24. HMD-AMP: Protein Language-Powered Hierarchical Multi-label Deep Forest for Annotating Antimicrobial Peptides
    Qinze Yu, Zhihang Dong, Xingyu Fan, Licheng Zong, Yu Li · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
  25. Codon language embeddings provide strong signals for protein engineering
    Carlos Outeiral, Charlotte Mary Deane · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
  26. Predicting functions of uncharacterized gene products from microbial communities
    Yancong Zhang, Amrisha Bhosle, Sena Bae, Kelly B. Eckenrode, Xueying Huang, Jingjing Tang, Danylo O. Lavrentovich, Lana Awad, Hua Ji, Ya Wang et al. · 2025 · Nature Biotechnology
  27. NbBench: benchmarking language models for comprehensive nanobody tasks
    Yiming Zhang, Koji Tsuda · 2025 · Machine Learning Science and Technology
  28. Streptococcus anginosus -derived methionine promotes gastric cancer progression
    Cheng‐Bei Zhou, Licong Zhao, Youwen Qin, Jingchen Yu, W. Li, Qianhui Feng, Xin Tong, Resalaiti Abuduaini, Shiyuan Lu, Huang Tang et al. · 2026 · Gut
  29. PepBERT: Lightweight language models for bioactive peptide representation
    Zhenjiao Du, Doina Caragea, Xiaolong Guo, Yonghui Li · 2026 · Future Foods
  30. The Bear Giant-Skipper genome suggests genetic adaptations to living inside yucca roots
    Qian Cong, Wenlin Li, Dominika Borek, Zbyszek Otwinowski, Nick V. Grishin · 2018 · Molecular Genetics and Genomics
  31. Analysis of host-pathogen gene association networks reveals patient-specific response to streptococcal and polymicrobial necrotising soft tissue infections
    Sanjeevan Jahagirdar, Lorna Morris, Nirupama Benis, Oddvar Oppegaard, Mattias Svenson, Ole Hyldegaard, Steinar Skrede, Anna Norrby‐Teglund, INFECT Study group, Trond Bruun et al. · 2022 · BMC Medicine
  32. Analysis of the inter-domain orientation of tandem RRM domains with diverse linkers: connecting experimental with AlphaFold2 predicted models
    Joel Roca‐Martínez, Hyun-Seo Kang, Michael Sattler, Wim Vranken · 2024 · NAR Genomics and Bioinformatics
  33. Do domain-specific protein language models outperform general models on immunology-related tasks?
    Nicolas Deutschmann, Aurélien Pélissier, Anna Weber, Shuaijun Gao, Jasmina Bogojeska, María Rodríguez Martínez · 2024 · ImmunoInformatics
  34. Is There an Optimal Substitution Matrix for Contact Prediction with Correlated Mutations?
    Pietro Di Lena, Piero Fariselli, Luciano Margara, Marco Vassura, Rita Casadio · 2010 · IEEE Transactions on Computational Biology and Bioinformatics
  35. Preimplantation development regulatory pathway construction through a text-mining approach
    Elisa R. Donnard, Adriano Barbosa-Silva, Rafael LM Guedes, Gabriel da Rocha Fernandes, Henrique Velloso, Matthew J. Kohn, Miguel Angel Andrade-Navarro, José Miguel Ortega · 2011 · BMC Genomics
  36. Novel search method for the discovery of functional relationships
    Fidel Ramírez, Glenn Lawyer, Mario Albrecht · 2011 · Bioinformatics
  37. NrichD database: sequence databases enriched with computationally designed protein-like sequences aid in remote homology detection
    Richa Mudgal, Sankaran Sandhya, Gayatri Kumar, Ramanathan Sowdhamini, Nagasuma R Chandra, Narayanaswamy Srinivasan · 2014 · Nucleic Acids Research
  38. 3gClust: Human Protein Cluster Analysis
    Anup Kumar Halder, Piyali Chatterjee, Mita Nasipuri, Dariusz Plewczyński, Subhadip Basu · 2018 · IEEE Transactions on Computational Biology and Bioinformatics
  39. Comparative Analysis of Homologous Sequences of Saccharum officinarum and Saccharum spontaneum Reveals Independent Polyploidization Events
    Anupma Sharma, Jinjin Song, Qingfan Lin, Ratnesh Kumar Singh, Ninfa Ramos, Kai Wang, Jisen Zhang, Ray Ming, Qingyi Yu · 2018 · Frontiers in Plant Science
  40. Quantitative proteome-based guidelines for intrinsic disorder characterization
    Michael P. Vincent, Mark E. Whidden, Santiago D. Schnell · 2016 · Biophysical Chemistry
  41. lncRNADetector: a bioinformatics pipeline for long non-coding RNA identification and MAPslnc: a repository of medicinal and aromatic plant lncRNAs
    Bhaskar Shukla, Sanchita Gupta, Gaurava Srivastava, Ashok Kumar Sharma, Ashutosh K. Shukla, Ajit Kumar Shasany · 2021 · RNA Biology
  42. Anaerobic Hydroxyproline Degradation Involving C–N Cleavage by a Glycyl Radical Enzyme
    Yongxu Duan, Yifeng Wei, Meining Xing, Jiayi Liu, Li Jiang, Qiang Lü, Xumei Liu, Yanhong Liu, Ee Lui Ang, Rong‐Zhen Liao et al. · 2022 · Journal of the American Chemical Society
  43. Discovery of the ATPase Activity of a Cobalt-Type Nitrile Hydratase Activator and Its Promoting Effect on Enzyme Maturation
    Yuanyuan Xia, Zhongyi Cheng, Chen Hou, Łukasz Pepłowski, Zhemin Zhou, Xianzhong Chen · 2022 · Biochemistry
  44. Multi-omics analysis reveals the host–microbe interactions in aged rhesus macaques
    Jue Xu, Yue Lan, Xinqi Wang, Ke Shang, Xu Liu, Jiao Wang, Jing Li, Bisong Yue, Meiying Shao, Zhenxin Fan · 2022 · Frontiers in Microbiology
  45. Protein language models meet reduced amino acid alphabets
    Ioan Ieremie, Rob M. Ewing, Mahesan Niranjan · 2024 · Bioinformatics
  46. Missing microbial eukaryotes and misleading meta-omic conclusions
    Arianna I. Krinos, Margaret Mars Brisbin, Sarah K. Hu, Natalie R. Cohen, Tatiana A. Rynearson, Michael J. Follows, Frederik Schulz, Harriet Alexander · 2024 · Nature Communications
  47. FHY3/FAR1 transposable elements generate adaptive genetic variation in the Bassia scoparia genome
    Nathan D. Hall, Jacob S. Montgomery, Jinyi Chen, Christopher A. Saski, Maor Matzrafi, Philip H. Westra, Todd Adam Gaines, Eric L. Patterson · 2025 · Pest Management Science
  48. Flavonoid supplementation affects the expression of genes involved in cell wall formation and lignification metabolism and increases sugar content and saccharification in the fast-growing eucalyptus hybrid E. urophylla x E. grandis
    Jorge Lepikson-Neto, Leandro Costa do Nascimento, Marcela M Salazar, Eduardo Leal Oliveira Camargo, João Paulo L. Franco Cairo, Paulo José Pereira Lima Teixeira, Wesley Leoricy Marques, Fabio Marcio Squina, Piotr A. Mieczkowski, Ana Carolina Deckmann et al. · 2014 · BMC Plant Biology
  49. Uncovering hidden duplicated content in public transcriptomics data
    Marta Rosikiewicz, Aurélie Comte, Anne Niknejad, Marc Robinson‐Rechavi, Frederic Bastian · 2013 · Database
  50. N-Terminal Domains in Two-Domain Proteins Are Biased to Be Shorter and Predicted to Fold Faster Than Their C-Terminal Counterparts
    Etai Jacob, Ron Unger, Amnon Horovitz · 2013 · Cell Reports
  51. EPTool: A New Enhancing PSSM Tool for Protein Secondary Structure Prediction
    Yuzhi Guo, Jiaxiang Wu, Hehuan Ma, Sheng Wang, Junzhou Huang · 2020 · Journal of Computational Biology
  52. Coordinated Diel Gene Expression of Cyanobacteria and Their Microbiome
    Kai Wang, Xiaozhen Mou · 2021 · Microorganisms
  53. Calcineurin B‐like domains in the large regulatory α/β subunits of phosphorylase kinase
    Cathelène Carrière, Jean‐Paul Mornon, Catherine Vénien‐Bryan, Nicolas Boisset, Isabelle Callebaut · 2008 · Proteins Structure Function and Bioinformatics
  54. A Case Study for Large-Scale Human Microbiome Analysis Using JCVI’s Metagenomics Reports (METAREP)
    Johannes B. Goll, Mathangi Thiagarajan, Sahar Abubucker, Curtis Huttenhower, Shibu Yooseph, Barbara A. Methé · 2012 · PLoS ONE
  55. Crystal Structure of the Substrate-Binding Domain from Listeria monocytogenes Bile-Resistance Determinant BilE
    Stephanie J. Ruiz, Gea K. Schuurman‐Wolters, Bert Poolman · 2016 · Crystals
  56. De novo assembly of a transcriptome from the eggs and early embryos of Astropecten aranciacus
    Francesco Musacchia, Filip Vasilev, Marco Borra, Elio Biffali, Remo Sanges, Luigia Santella, Jong Tai Chun · 2017 · PLoS ONE
  57. Computing the Pathogenicity of Wilson’s Disease ATP7B Mutations: Implications for Disease Prevalence
    Ning Tang, Thomas Damgaard Sandahl, Peter Ott, Kasper P. Kepp · 2019 · Journal of Chemical Information and Modeling
  58. Profiling novel lateral gene transfer events in the human microbiome
    Tiffany Y. Hsu, Étienne Nzabarushimana, Dennis H.-J. Wong, Chengwei Luo, Robert Gerald Beiko, Morgan G. I. Langille, Curtis Huttenhower, Long H. Nguyen, Eric A. Franzosa · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
  59. Molecular and physiological characterization of grapevine rootstock adaptation to drought
    Anthony Peccoux · 2011 · Oskar-Bordeaux (Universite de Bordeaux)
  60. Diffusion Models at the Drug Discovery Frontier: A Review on Generating Small Molecules Versus Therapeutic Peptides
    Yiquan Wang, Yahui Ma, Yu-Han Chang, Jiayao Yan, Jialin Zhang, Ming-Yi Cai, Kai Wei · 2025 · Biology
  61. Gut Phage Biobank: a collection of bacteriophages targeting human commensal bacteria
    Bo Xing, Cong Liu, Wantong Chen, Zhuoran Li, Xiaohuan Jing, Chao‐Liang Wu, Ruixin Liu, Xiuqin Zhang, Xun Xu, Junhua Li et al. · 2025 · Nature Communications
  62. AI-accelerated therapeutic antibody development: practical insights
    Luca Santuari, Marianne Bachmann Salvy, Ioannis Xénarios, Alaaddin Bulak Arpat · 2024 · Frontiers in Drug Discovery
  63. Comprehensive Assessment of BERT-Based Methods for Predicting Antimicrobial Peptides
    W J Gao, Jun Wei Zhao, Jianfeng Gui, Zehan Wang, Jie Chen, Zhenyu Yue · 2024 · Journal of Chemical Information and Modeling
  64. In silico prediction of variant effects: promises and limitations for precision plant breeding
    Janek Sendrowski, Thomas M Bataillon, Guillaume P. Ramstein · 2025 · Theoretical and Applied Genetics
  65. Protein language model identifies disordered, conserved motifs implicated in phase separation
    Zhang, Yumeng, Zheng, Jared, Zhang, Bin · 2025 · eLife
  66. Transfer learning on protein language models improves antimicrobial peptide classification
    Elias Georgoulis, Michaela Areti Zervou, Yannis Pantazis · 2025 · Scientific Reports
  67. Structure- and context-based analysis of the GxGYxYP family reveals a new putative class of Glycoside Hydrolase
    Daniel John Rigden, Ruth Y. Eberhardt, Harry John Gilbert, Qingping Xu, Yuanyuan Chang, Adam Godzik · 2014 · BMC Bioinformatics
  68. Computational Investigation of Growth Hormone Receptor Trp169Arg Heterozygous Mutation in a Child With Short Stature
    William Farias Porto, Felipe Albuquerque Marques, Huri Brito Pogue, Maria Teresinha de Oliveira Cardoso, Maria Gabriela Rodrigues do Vale, Állan da Silva Pires, Octávio Luiz Franco, Sérgio Amorim de Alencar, Robert Edward Pogue · 2017 · Journal of Cellular Biochemistry
  69. Predicting the functional impact of KCNQ1 variants with artificial neural networks
    Saksham Phul, Georg Kuenze, Carlos G. Vanoye, Charles R. Sanders, Alfred L. George, Jens Meiler · 2022 · PLoS Computational Biology
  70. Amphicarpic development in Cardamine chenopodiifolia
    Aurélia Emonet, Miguel Pérez‐Antón, Ulla Neumann, Sonja Dunemann, Bruno Hüettel, Robert Koller, Angela Hay · 2024 · New Phytologist
  71. Combinations of long peptide sequence blocks can be used to describe toxin diversification in venomous animals
    Antonio Starčević, Ana Maria Moura-da-Silva, John Cullum, Daslav Hranueli, Paul F. Long · 2015 · Toxicon
  72. AnABlast: a newin silicostrategy for the genome-wide search of novel genes and fossil regions
    Juan Jiménez, Caia D. S. Duncan, María Gallardo‐Gómez, Juan Mata, Antonio J. Pérez‐Pulido · 2015 · DNA Research
  73. Protein Repeats from First Principles
    Pablo Turjanski, R. Gonzalo Parra, Rocío Espada, Verónica Becher, Diego Ulises Ferreiro · 2016 · Scientific Reports
  74. Universal principles of membrane protein assembly, composition and evolution
    Alan Jialun Situ, Tobias S. Ulmer · 2019 · PLoS ONE
  75. Clustering evolving proteins into homologous families
    Cheong Xin Chan, Maisarah Mahbob, Mark A. Ragan · 2013 · BMC Bioinformatics
  76. Prediction of Protein Function Improving Sequence Remote Alignment Search by a Fuzzy Logic Algorithm
    Antonio Gómez, Juan A. Cedano, Jordi Espadaler, Antonio Hermoso, Jaume Piñol, Enrique Querol · 2007 · The Protein Journal
  77. HMPAS: Human Membrane Protein Analysis System
    Min‐Sung Kim, Gwan‐Su Yi · 2013 · Proteome Science
  78. Geological degassing enhances microbial metabolism in the continental subsurface
    Till L. V. Bornemann, Panagiotis S. Adam, Victoria Turzynski, Ulrich Schreiber, Perla Abigail Figueroa-Gonzalez, Janina Rahlff, Daniel Köster, Torsten Claus Schmidt, Ralf Schunk, Bernhard Krauthausen et al. · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
  79. Neural Potts Model
    Tom Sercu, Robert Verkuil, Joshua Meier, Brandon Amos, Zeming Lin, Caroline Chen, Jason J. Liu, Yann LeCun, Alexander W. Rives · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
  80. Insights into the structure-function relationship of the NorQ/NorD chaperones from Paracoccus denitrificans reveal shared principles of interacting MoxR AAA+/VWA domain proteins
    Kahle, Maximilian, Appelgren, Sofia, Elofsson, Arne, Carroni, Marta, Ädelroth, Pia · 2023 · BMC Biology
  81. Fish proteins as potential precursors of taste‐active compounds: an in silico study
    Yun Feng Hu, Naiyong Xiao, Yiting Ye, Wenzheng Shi · 2022 · Journal of the Science of Food and Agriculture
  82. A Widespread Radical-Mediated Glycolysis Pathway
    Kailiang Ma, Bo Xue, Ruoxing Chu, Yuchun Zheng, Shishir Sharma, Li Jiang, Min Hu, Yiren Xie, Yiling Hu, Tiantian Tao et al. · 2024 · Journal of the American Chemical Society
  83. Unveiling the ghost: machine learning’s impact on the landscape of virology
    Sebastian Bowyer, David James Allen, Nicholas Furnham · 2025 · Journal of General Virology
  84. The Role of Gut Microbiota in the Association Between Air Pollution and Cognitive Function in Older Adults
    Wenhao Qi, Mengmeng Kong, Xia Meng, Zhonghan Sun, Zhendong Mei, Yanni Pu, Xiaofeng Zhou, Qichu Wang, Jian‐Ge Qiu, Bing‐Hua Jiang et al. · 2025 · Environmental Health Perspectives
  85. The adoption of a westernized gut microbiome in Indian Immigrants and Indo-Canadians is associated with dietary acculturation
    Leah D D'Aloisio, Mamatha Ballal, Sanjoy Ghosh, Natasha Haskey, Nijiati Abulizi, Ramin Karimianghadim, Chuyi Liu, Pacha Sruthi, Nagarajan Lakshmipriya, Vasudevan Sudha et al. · 2025 · npj Biofilms and Microbiomes
  86. Use of evolutionary information in the fitting of atomic level protein models in low resolution cryo-EM map of a protein assembly improves the accuracy of the fitting
    Agnel Praveen Joseph, Lakshmipuram S. Swapna, Ramachandran Rakesh, Narayanaswamy Srinivasan · 2016 · Journal of Structural Biology
  87. Comprehensive Study on Enhancing Low-Quality Position-Specific Scoring Matrix with Deep Learning for Accurate Protein Structure Property Prediction: Using Bagging Multiple Sequence Alignment Learning
    Yuzhi Guo, Jiaxiang Wu, Hehuan Ma, Sheng Wang, Junzhou Huang · 2021 · Journal of Computational Biology
  88. Metagenomic analysis reveals distinct changes in the gut microbiome of obese Chinese children
    Ping Li, Jiyang Jiang, Yifei Li, Yue Lan, Fan Yang, Jiao Wang, Yuxin Xie, Fei Xiong, Jinhui Wu, Hanmin Liu et al. · 2023 · BMC Genomics
  89. Enhancing Protein Solubility Prediction through Pre-trained Language Models and Graph Convolutional Neural Networks
    Jie Chen, Yurong Qian, Zhijian Huang, Xiaojun Xiao, Lei Deng · 2023 · IEEE International Conference on Bioinformatics and Biomedicine (BIBM)
  90. AlPaCas: allele-specific CRISPR gene editing through a protospacer-adjacent-motif (PAM) approach
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  91. Protein Clustering and RNA Phylogenetic Reconstruction of the Influenza a Virus NS1 Protein Allow an Update in Classification and Identification of Motif Conservation
    Edgar E. Sevilla-Reyes, David Armando Chavaro-Pérez, Elvira Pitén-Isidro, Luis Horacio Gutiérrez-González, Teresa Santos-Mendoza · 2013 · PLoS ONE
  92. An overview of human protein databases and their application to functional proteomics in health and disease
    Yanqiong Zhang, Yunping Zhu, Fuchu He · 2011 · Science China Life Sciences
  93. Accurate Prediction of Contact Numbers for Multi-Spanning Helical Membrane Proteins
    Bian Li, Jeffrey Mendenhall, Elizabeth Dong Nguyen, Brian E. Weiner, Axel W. Fischer, Jens Meiler · 2016 · Journal of Chemical Information and Modeling
  94. Mapping the Terrain for Pathogen Persistence and Proliferation in Non-potable Reuse Distribution Systems: Interactive Effects of Biofiltration, Disinfection, and Water Age
    Sudeshna Ghosh, Ni Joyce Zhu, Erin Milligan, Joseph O. Falkinham, Amy J. Pruden, Marc A. Edwards · 2021 · Environmental Science & Technology
  95. Draft Genome Sequence of Actinobacillus pleuropneumoniae Serotype 7 Strain S-8
    Gang Li, Fang Xie, Yanhe Zhang, Chunlai Wang · 2012 · Journal of Bacteriology
  96. SCL-Epred: a generalised de novo eukaryotic protein subcellular localisation predictor
    Catherine Mooney, Amélie Cessieux, Denis C. Shields, Gianluca Pollastri · 2013 · Amino Acids
  97. Evidence for Loss of a Partial Flagellar Glycolytic Pathway during Trypanosomatid Evolution
    Robert W. B. Brown, Peter W. Collingridge, Keith Gull B, Daniel John Rigden, Michael L. Ginger · 2014 · PLoS ONE
  98. Conserved residues of the Pro103–Arg115 loop are involved in triggering the allosteric response of the Escherichia coli ADP‐glucose pyrophosphorylase
    Benjamin L. Hill, Jennifer Wong-Roushar, Brian M. May, Fidel Huerta, Tara E. Manley, Peter R.F. Sullivan, Kenneth W. Olsen, Miguel Angel Ballicora · 2015 · Protein Science
  99. Protein docking with predicted constraints
    Ludwig Krippahl, Pedro Barahona · 2015 · Algorithms for Molecular Biology
  100. Human gut bacteria produce T H 17-modulating bile acid metabolites
    Donggi Paik, Lina Yao, Yancong Zhang, Sena Bae, Gabriel D. D’Agostino, Eunha Kim, Eric A. Franzosa, Julián Ávila-Pacheco, Jordan E. Bisanz, Christopher K. Rakowski et al. · 2021 · bioRxiv (Cold Spring Harbor Laboratory)