UniRef: comprehensive and non-redundant UniProt reference clusters

Cited by (1,003)

Items 401–500 of 1,003

1. IKK-β inhibitors: An analysis of drug–receptor interaction by using Molecular Docking and Pharmacophore 3D-QSAR approaches
   Antonino Lauria, Mario Ippolito, Marco Fazzari, Marco Tutone, Francesco Di Blasi, Francesco Mingoia, Anna Maria Almerico · 2010 · Journal of Molecular Graphics and Modelling
2. Comparative transcriptomics of early dipteran development
   Eva Jiménez-Guri, Jaime Huerta‐Cepas, Luca Cozzuto, Karl R. Wotton, Hui Kang, Heinz Himmelbauer, Guglielmo Roma, Toni Gabaldón, Johannes Jaeger · 2013 · BMC Genomics
3. Global transcriptional response of solvent‐sensitive and solvent‐tolerant Pseudomonas putida strains exposed to toluene
   Carlos Molina‐Santiago, Zulema Udaondo, María Gómez‐Lozano, Søren Molin, Juan L. Ramos · 2016 · Environmental Microbiology
4. Understanding lipid metabolism in high-lipid-producing Chlorella vulgaris mutants at the genome-wide level
   Ehsan Sarayloo, Mehmet Tardu, Yigit Sabri Unlu, Salim Simsek, Gül Cevahir, Can Erkey, İbrahim Halil Kavaklı · 2017 · Algal Research
5. Mechanistic Insight into the Catalytic Promiscuity of Amine Dehydrogenases: Asymmetric Synthesis of Secondary and Primary Amines
   Vasilis Tseliou, Marcelo F. Masman, Wesley Böhmer, Tanja Knaus, Francesco G. Mutti · 2018 · ChemBioChem
6. Lytic archaeal viruses infect abundant primary producers in Earth’s crust
   Janina Rahlff, Victoria Turzynski, Sarah P. Esser, Indra Monsees, Till L. V. Bornemann, Perla Abigail Figueroa-Gonzalez, Frederik Schulz, Tanja Woyke, Andreas Klingl, Cristina Moraru et al. · 2021 · Nature Communications
7. Insights from shotgun metagenomics into bacterial species and metabolic pathways associated with NAFLD in obese youth
   Todd Testerman, Zhongyao Li, Brittany Galuppo, Joerg Graf, Nicola Santoro · 2022 · Hepatology Communications
8. Rural environment reduces allergic inflammation by modulating the gut microbiota
   Zhaowei Yang, Zhong Chen, Xinliu Lin, Siyang Yao, Mo Xian, Xiaoping Ning, Wanyi Fu, Mei Jiang, Naijian Li, Xiaojun Xiao et al. · 2022 · Gut Microbes
9. Microbial-derived imidazole propionate links the heart failure-associated microbiome alterations to disease severity
   Sajan C. Raju, Antonio Molinaro, Ayodeji Awoyemi, Silje F. Jørgensen, Peder R. Braadland, Andraž Nendl, Ingebjørg Seljeflot, Per Magne Ueland, Adrian McCann, Pål Aukrust et al. · 2024 · Genome Medicine
10. Scaling Unlocks Broader Generation and Deeper Functional Understanding of Proteins
    Aadyot Bhatnagar, Sarthak Jain, Joel Beazer, Samuel C. Curran, Alexander M. Hoffnagle, Kyle Ching, Michael Martyn, Stephen Nayfach, Jeffrey A. Ruffolo, Ali Madani · 2025 · neural information processing systems
11. What stabilizes close arginine pairing in proteins?
    Dongseon Lee, Juyong Lee, Chaok Seok · 2013 · Physical Chemistry Chemical Physics
12. The N‐terminal domains of SOCS proteins: A conserved region in the disordered N‐termini of SOCS4 and 5
    Zhiping Feng, Indu R. Chandrashekaran, Andrew Low, Terence Paul Speed, Sandra E. Nicholson, Raymond S. Norton · 2011 · Proteins Structure Function and Bioinformatics
13. A large and accurate collection of peptidase cleavages in the MEROPS database
    Neil David Rawlings · 2009 · Database
14. The OMG dataset: An Open MetaGenomic corpus for mixed-modality genomic language modeling
    Andre Cornman, Jacob A. West-Roberts, Antônio Pedro Camargo, Simon Roux, Martín Beracochea, Milot Mirdita, Sergey Ovchinnikov, Yunha Hwang · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
15. DistilProtBert: a distilled protein language model used to distinguish between real proteins and their randomly shuffled counterparts
    Geffen, Yaron, Ofran, Yanay, Unger, Ron · 2022 · Bioinformatics
16. Genome comparison of two Exiguobacterium strains from high altitude andean lakes with different arsenic resistance: identification and 3D modeling of the Acr3 efflux pump
    Omar Federico Ordoñez, Esteban Lanzarotti, Daniel G. Kurth, Néstor Cortez, Marı́a Eugenia Farı́as, Adrian Gustavo Turjanski · 2015 · Frontiers in Environmental Science
17. Pentamers Not Found in the Universal Proteome Can Enhance Antigen Specific Immune Responses and Adjuvant Vaccines
    Ami R. Patel, Jessica C. Dong, B. Trost, Jason S. Richardson, Sarah Tohme, S. Babiuk, A. Kusalik, Sam K. P. Kung, G. Kobinger · 2012 · PLoS ONE
18. VHR / DUSP 3 phosphatase: structure, function and regulation
    Karolina Pavic, Guangyou Duan, Maja Köhn · 2015 · FEBS Journal
19. Pervasive Indels and Their Evolutionary Dynamics after the Fish-Specific Genome Duplication
    Baocheng Guo, Ming Zou, Andreas Wagner · 2012 · Molecular Biology and Evolution
20. ORION: a web server for protein fold recognition and structure prediction using evolutionary hybrid profiles
    Yassine Ghouzam, Guillaume Postic, Pierre‐Édouard Guérin, Alexandre G. de Brevern, Jean‐Christophe Gelly · 2016 · Scientific Reports
21. MerR and ChrR mediate blue light induced photo-oxidative stress response at the transcriptional level in Vibrio cholerae
    Mehmet Tardu, Selma Bulut, İbrahim Halil Kavaklı · 2017 · Scientific Reports
22. Exploring a Pool‐seq‐only approach for gaining population genomic insights in nonmodel species
    Sara Kurland, Christopher West Wheat, Maria de la Paz Celorio‐Mancera, Verena Esther Kutschera, Jason A. Hill, Anastasia Andersson, Carl‐Johan Rubin, Leif Andersson, Nils Ryman, Linda Laikre · 2019 · Ecology and Evolution
23. Mechanistically Diverse Pathways for Sulfoquinovose Degradation in Bacteria
    Jiayi Liu, Yifeng Wei, Kailiang Ma, Junwei An, Xumei Liu, Yinbo Liu, Ee Lui Ang, Huimin Zhao, Yan Zhang · 2021 · ACS Catalysis
24. Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile
    Bryant, Patrick, Noé, Frank · 2024 · PLOS Computational Biology
25. Assembly, Gene Annotation and Marker Development Using 454 Floral Transcriptome Sequences in Ziziphus Celata (Rhamnaceae), a Highly Endangered, Florida Endemic Plant
    Christine E. Edwards, Thomas Lee Parchman, Carl W. Weekley · 2011 · DNA Research
26. SeqScreen: accurate and sensitive functional screening of pathogenic sequences via ensemble learning
    Advait Balaji, Bryce L. Kille, Anthony D. Kappell, Gene D. Godbold, Madeline M. Diep, Ryan A. Leo Elworth, Zhiqin Qian, Dreycey Albin, Daniel J. Nasko, Nidhi Shah et al. · 2022 · Genome biology
27. GSPHI: A novel deep learning model for predicting phage-host interactions via multiple biological information
    Jie Pan, Wencai You, Xiaoliang Lü, Shiwei Wang, Zhu‐Hong You, Yanmei Sun · 2023 · Computational and Structural Biotechnology Journal
28. Gut-resident microorganisms and their genes are associated with cognition and neuroanatomy in children
    Kevin Scott Bonham, Guilherme Fahur Bottino, Shelley McCann, Jennifer Beauchemin, Elizabeth Weisse, Fatoumata Barry, Rosa Cano-Lorente, Curtis Huttenhower, Muriel Marisa Katharina Bruchhage, Viren A. D’Sa et al. · 2023 · Science Advances
29. Mixed transmission modes and dynamic genome evolution in an obligate animal–bacterial symbiosis
    Shelbi L. Russell, Russell B Corbett-Detig, Colleen M. Cavanaugh · 2017 · The ISME Journal
30. Terzyme: a tool for identification and analysis of the plant terpenome
    Piyush Priya, Archana Yadav, Jyoti Chand, Gitanjali Yadav · 2018 · Plant Methods
31. Computational SNP Analysis and Molecular Simulation Revealed the Most Deleterious Missense Variants in the NBD1 Domain of Human ABCA1 Transporter
    Raju Dash, Md. Chayan Ali, Md. Liton Rana, Yeasmin Akter Munni, Largess Barua, Israt Jahan, Mst. Fatema Haque, Md. Abdul Hannan, Il Soo Moon · 2020 · International Journal of Molecular Sciences
32. Computational approaches for predicting variant impact: An overview from resources, principles to applications
    Ye Liu, William S.B. Yeung, Philip C.N. Chiu, Dandan Cao · 2022 · Frontiers in Genetics
33. Probing Metagenomics by Rapid Cluster Analysis of Very Large Datasets
    Weizhong Li, John Wooley, Adam Godzik · 2008 · PLoS ONE
34. Comparative expression profiling reveals widespread coordinated evolution of gene expression across eukaryotes
    Trevor Martin, Hunter B. Fraser · 2018 · Nature Communications
35. Genome-scale annotation of protein binding sites via language model and geometric deep learning
    Yuan, Qianmu, Tian, Chong, Yang, Yuedong · 2024 · eLife
36. DepoScope: Accurate phage depolymerase annotation and domain delineation using large language models
    Robby Concha-Eloko, Michiel Stock, Bernard De Baets C, Yves Briers, Rafael Sanjuán, Pilar Domingo‐Calap, Dimitri Boeckaerts · 2024 · PLoS Computational Biology
37. The future of machine learning for small-molecule drug discovery will be driven by data
    Guy Durant, Fergus Boyles, Kristian Birchall, Charlotte Mary Deane · 2024 · Nature Computational Science
38. Interspecific and host-related gene expression patterns in nematode-trapping fungi
    Karl‐Magnus Andersson, Dharmendra Kumar, Johan Bentzer, Eva Friman, Dag Ahrén, Anders Tunlid · 2014 · BMC Genomics
39. Molecular Evolution of Protein Conformational Changes Revealed by a Network of Evolutionarily Coupled Residues
    Jouhyun Jeon, Hyun-Jun Nam, Yoon Sup Choi, Jae‐Seong Yang, Jihye Hwang, Sanguk Kim · 2011 · Molecular Biology and Evolution
40. Evaluation of the impact of RNA preservation methods of spiders forde novotranscriptome assembly
    Nobuaki Kono, Hiroyuki Nakamura, Yusuke Ito, Masaru Tomita, Kazuharu Arakawa · 2015 · Molecular Ecology Resources
41. Speciation in Cloudless Sulphurs Gleaned from Complete Genomes
    Qian Cong, Jinhui Shen, ANDREW DAVID WARREN, Dominika Borek, Zbyszek Otwinowski, Nick V. Grishin · 2016 · Genome Biology and Evolution
42. Short- and Long-Term Effects of UVA on Arabidopsis Are Mediated by a Novel cGMP Phosphodiesterase
    Jean‐Charles Isner, Vlad-Aris Olteanu, Alexander J. Hetherington, Aude Coupel‐Ledru, Peng Sun, Ashley J. Pridgeon, Glyndyr S. Jones, Matthew Oates, Tom A. Williams, Frans J. M. Maathuis et al. · 2019 · Current Biology
43. Structures of A rg‐ and G ln‐type bacterial cysteine dioxygenase homologs
    Camden Driggers, Steven J. Hartman, P. Andrew Karplus · 2014 · Protein Science
44. Genome-resolved metagenomics using environmental and clinical samples
    Masood Ur Rehman Kayani, Wanqiu Huang, Ru Feng, Lei Chen · 2021 · Briefings in Bioinformatics
45. AFTGAN: prediction of multi-type PPI based on attention free transformer and graph attention network
    Yanlei Kang, Arne Elofsson, Yunliang Jiang, Weihong Huang, Minzhe Yu, Zhong Li · 2023 · Bioinformatics
46. Skipper genome sheds light on unique phenotypic traits and phylogeny
    Qian Cong, Dominika Borek, Zbyszek Otwinowski, Nick V. Grishin · 2015 · BMC Genomics
47. Is chemically dispersed oil more toxic to Atlantic cod (Gadus morhua) larvae than mechanically dispersed oil? A transcriptional evaluation
    Pål A. Olsvik, Kai Kristoffer Lie, Trond Nordtug, Bjørn Henrik Hansen · 2012 · BMC Genomics
48. Memoir: template-based structure prediction for membrane proteins
    Jean-Paul Ebejer, Jamie Hill, Sebastian Kelm, Jiye Shi, Charlotte Mary Deane · 2013 · Nucleic Acids Research
49. Improving protein fold recognition with hybrid profiles combining sequence and structure evolution
    Yassine Ghouzam, Guillaume Postic, Alexandre G. de Brevern, Jean‐Christophe Gelly · 2015 · Bioinformatics
50. Machine learning-based investigation of the relationship between gut microbiome and obesity status
    Wanjun Liu, Xiaojie Fang, Yong Zhou, Lihong Dou, Tongyi Dou · 2021 · Microbes and Infection
51. Cross-phyla protein annotation by structural prediction and alignment
    Ruperti, Fabian, Papadopoulos, Nikolaos, Musser, Jacob M., Mirdita, Milot, Steinegger, Martin, Arendt, Detlev · 2023 · Genome Biology
52. Structural Modeling of Nanobodies: A Benchmark of State-of-the-Art Artificial Intelligence Programs
    2023
53. Drug-target binding affinity prediction using message passing neural network and self supervised learning
    Leiming Xia, Lei Xu, Shourun Pan, Dongjiang Niu, Beiyi Zhang, Zhen Li · 2023 · BMC Genomics
54. Identification of gut microbiome features associated with host metabolic health in a large population-based cohort
    Ayya Keshet, Eran Segal · 2024 · Nature Communications
55. Roles of residues in the interface of transient protein-protein complexes before complexation
    Lakshmipuram S. Swapna, Ramachandra M. Bhaskara, Jyoti Nanda Sharma, Narayanaswamy Srinivasan · 2012 · Scientific Reports
56. Blind prediction of deleterious amino acid variations with SNPs&GO
    Emidio Capriotti, Pier Luigi Martelli, Piero Fariselli, Rita Casadio · 2017 · Human Mutation
57. 3Cnet: pathogenicity prediction of human variants using multitask learning with evolutionary constraints
    Dhong‐gun Won, Dongwook Kim, Junwoo Woo, Kyoungyeul Lee · 2021 · Bioinformatics
58. Enzyme activity engineering based on sequence co-evolution analysis
    Donghyo Kim, Myung Hyun Noh, Minhyuk Park, Inhae Kim, Hyunsoo Ahn, Dae-yeol Ye, Gyoo Yeol Jung, Sanguk Kim · 2022 · Metabolic Engineering
59. Subtelomeric 5-enolpyruvylshikimate-3-phosphate synthase copy number variation confers glyphosate resistance in Eleusine indica
    Zhang Chun, Nicholas A. Johnson, Nathan D. Hall, Xingshan Tian, Qin Ping Yu, Eric L. Patterson · 2023 · Nature Communications
60. Implications for nitrogen and sulphur cycles: phylogeny and niche-range of Nitrospirota in terrestrial aquifers
    Olivia E. Mosley, Emilie Gios, Kim M. Handley · 2024 · ISME Communications
61. Enhanced protein fold recognition using a structural alphabet
    Patrick Deschavanne, Pierre Tufféry · 2008 · Proteins Structure Function and Bioinformatics
62. Genomic Insights Into the Lifestyles of Thaumarchaeota Inside Sponges
    Markus Haber, Ilia Burgsdorf, Kim M. Handley, Maxim Rubin‐Blum, Laura Steindler · 2021 · Frontiers in Microbiology
63. MPRAP: An accessibility predictor for a-helical transmem-brane proteins that performs well inside and outside the membrane
    Kristoffer Illergård, Simone Callegari, Arne Elofsson · 2010 · BMC Bioinformatics
64. Plastic leachate exposure drives antibiotic resistance and virulence in marine bacterial communities
    Eric J. Vlaanderen, Timothy M. Ghaly, Lisa R. Moore, Amaranta Focardi, Ian T. Paulsen, Sasha G. Tetu · 2023 · Environmental Pollution
65. Peripheral neuronal activation shapes the microbiome and alters gut physiology
    Jessica A. Griffiths, Bryan B. Yoo, Peter S. Thuy-Boun, Victor Cantu, Kelly C. Weldon, Collin Challis, Michael J. Sweredoski, Ken Y. Chan, Taren Thron, Gil Sharon et al. · 2024 · Cell Reports
66. Longitudinal dynamics of farmer and livestock nasal and faecal microbiomes and resistomes
    Bejan Mahmud, Rhiannon C. Vargas, Kimberley V. Sukhum, Sanket Patel, James Liao, Lindsey R. Hall, Akhil Kesaraju, Thao Le, Terrie Kitchner, Erik Kronholm et al. · 2024 · Nature Microbiology
67. Protein function prediction using guilty by association from interaction networks
    Damiano Piovesan, Manuel Giollo, Carlo Ferrari, Silvio C. E. Tosatto · 2015 · Amino Acids
68. A Numbering System for MFS Transporter Proteins
    Joanna Lee, Zara A. Sands, Philip Charles Biggin · 2016 · Frontiers in Molecular Biosciences
69. Hospitalized Premature Infants Are Colonized by Related Bacterial Strains with Distinct Proteomic Profiles
    Christopher T. Brown, Weili Xiong, Matthew R. Olm, Brian C. Thomas, Robyn Wyman Baker, Brian Firek, Michael J. Morowitz, Robert L. Hettich, Jillian F. Banfield · 2018 · mBio
70. CRISPR Spacers Indicate Preferential Matching of Specific Virioplankton Genes
    Daniel J. Nasko, Barbra D. Ferrell, Ryan M. Moore, Jaysheel Bhavsar, Shawn W. Polson, K. Eric Wommack · 2019 · mBio
71. Advancing drug–target interaction prediction: a comprehensive graph-based approach integrating knowledge graph embedding and ProtBert pretraining
    Warith Eddine Djeddi, Khalil Hermi, Sadok Ben Yahia, Gayo Diallo · 2023 · BMC Bioinformatics
72. An explainable language model for antibody specificity prediction using curated influenza hemagglutinin antibodies
    Yiquan Wang, Huibin Lv, Qi Wen Teo, Ruipeng Lei, Akshita Baiju Gopal, Wenhao O. Ouyang, Yuen-Hei Yeung, Timothy J.C. Tan, Danbi Choi, Ivana R. Shen et al. · 2024 · Immunity
73. Viral Proteins Acquired from a Host Converge to Simplified Domain Architectures
    Nadav Rappoport, Michal Linial · 2012 · PLoS Computational Biology
74. Structure and Flexibility of the C-Ring in the Electromotor of Rotary FoF1-ATPase of Pea Chloroplasts
    Shai Saroussi, Maya Schushan, Nir Ben‐Tal, Wolfgang Junge, Nathan Nelson · 2012 · PLoS ONE
75. Candidate effector gene identification in the ascomycete fungal phytopathogen Venturia inaequalis by expressed sequence tag analysis
    Joanna K. Bowen, Carl H. Mesarich, Jonathan Rees‐George, Wei Cui, Anna M. Fitzgerald, Joe Win, Kim M. Plummer, Matthew D. Templeton · 2009 · Molecular Plant Pathology
76. SalmonDB: a bioinformatics resource for Salmo salar and Oncorhynchus mykiss
    Alex Di Genova, Andrés Aravena, L. Zapata, Maurício González, Alejandro Maass, Patricia Iturra · 2011 · Database
77. Intramolecular allosteric communication in dopamine D2 receptor revealed by evolutionary amino acid covariation
    Yun-Min Sung, Angela D. Wilkins, Gustavo J. Rodriguez, Theodore G. Wensel, Olivier Lichtarge · 2016 · Proceedings of the National Academy of Sciences
78. Fluoride Depletes Acidogenic Taxa in Oral but Not Gut Microbial Communities in Mice
    Koji Yasuda, Tiffany Y. Hsu, Carey Ann Gallini, Lauren J. Mclver, Emma Schwager, Andy Shi, Casey R. DuLong, Randall Schwager, Galeb Abu-Ali, Eric A. Franzosa et al. · 2017 · mSystems
79. Family A DNA Polymerase Phylogeny Uncovers Diversity and Replication Gene Organization in the Virioplankton
    Daniel J. Nasko, Jessica Chopyk, Eric G. Sakowski, Barbra D. Ferrell, Shawn W. Polson, K. Eric Wommack · 2018 · Frontiers in Microbiology
80. Salt-bridge dynamics in intrinsically disordered proteins: A trade-off between electrostatic interactions and structural flexibility
    Sankar Basu, Parbati Biswas · 2018 · Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics
81. Fueling ab initio folding with marine metagenomics enables structure and function predictions of new protein families
    Yan Wang, Qiang Shi, Pengshuo Yang, Chengxin Zhang, S. M. Mortuza, Zhidong Xue, Kang Ning, Yang Zhang · 2019 · Genome biology
82. Age‐ and duration‐dependent effects of whey protein on high‐fat diet‐induced changes in body weight, lipid metabolism, and gut microbiota in mice
    Serena Boscaini, Raúl Cabrera‐Rubio, Oleksandr Nychyk, John Roger Speakman, John F. Cryan, Paul D. Cotter, Kanishka N. Nilaweera · 2020 · Physiological Reports
83. Saccharibacteria as Organic Carbon Sinks in Hydrocarbon-Fueled Communities
    Perla Abigail Figueroa-Gonzalez, T. Bornemann, P. Adam, J. Plewka, Fruzsina Révész, Christian A. von Hagen, A. Táncsics, A. Probst · 2020 · Frontiers in Microbiology
84. Prediction of disease-associated nsSNPs by integrating multi-scale ResNet models with deep feature fusion
    Fang Ge, Ying Zhang, Jian Xu, Muhammad Arif, Jiangning Song, Dong‐Jun Yu · 2021 · Briefings in Bioinformatics
85. Protein Bioinformatics Databases and Resources
    Chuming Chen, Hongzhan Huang, Cathy H. Wu · 2010 · Methods in molecular biology
86. Coils in the Membrane Core Are Conserved and Functionally Important
    Anni Kauko, Kristoffer Illergård, Arne Elofsson · 2008 · Journal of Molecular Biology
87. Xylem transcription profiles indicate potential metabolic responses for economically relevant characteristics of Eucalyptusspecies
    Marcela Mendes Salazar, Leandro Costa do Nascimento, Eduardo Leal Oliveira Camargo, Danieli Cristina Gonçalves, Jorge Lepikson Neto, Wesley Leoricy Marques, Paulo José Pereira Lima Teixeira, Piotr A. Mieczkowski, Jorge Maurı́cio Costa Mondego, Marcelo Falsarella Carazzolle et al. · 2013 · BMC Genomics
88. Studying Genome Heterogeneity within the Arbuscular Mycorrhizal Fungal Cytoplasm
    Eva Boon, Sébastien Halary, Eric P Bapteste, Mohamed Hijri · 2015 · Genome Biology and Evolution
89. MP-T: improving membrane protein alignment for structure prediction
    Jamie Hill, Charlotte Mary Deane · 2012 · Bioinformatics
90. Differential transcriptional response to antibiotics by P seudomonas putida DOT ‐ T1E
    Carlos Molina‐Santiago, Abdelali Daddaoua, María Gómez‐Lozano, Zulema Udaondo, Søren Molin, Juan L. Ramos · 2015 · Environmental Microbiology
91. Unveiling the presence of biosynthetic pathways for bioactive compounds in the Thalassiosira rotula transcriptome
    Valeria Di Dato, Federica Di Costanzo, Roberta Barbarinaldi, Anna Perna, Adrianna Ianora, Giovanna Romano · 2019 · Scientific Reports
92. Multi-omics examination of Q fever fatigue syndrome identifies similarities with chronic fatigue syndrome
    Ruud P. H. Raijmakers, Megan E. Roerink, Anne F.M. Jansen, Stephan P. Keijmel, Ranko Gaćeša, Yang Li, Leo A. B. Joosten, Jos W. M. van der Meer, Mihai Gheorghe Netea, Chantal P. Bleeker‐Rovers et al. · 2020 · Journal of Translational Medicine
93. Transcriptomic analysis of early stages of intestinal regeneration in Holothuria glaberrima
    David J. Quispe-Parra, Joshua G. Medina-Feliciano, Sebastián Cruz-González, Humberto Ortiz‐Zuazaga, José E. García‐Arrarás · 2021 · Scientific Reports
94. Evolutionary action of mutations reveals antimicrobial resistance genes in Escherichia coli
    David C. Marciano, Chen Wang, Teng‐Kuei Hsu, Thomas Bourquard, Benu Atri, Ralf Bernd Nehring, Nicholas S. Abel, Elizabeth A. Bowling, Taylor J Chen, Pamela Lurie et al. · 2022 · Nature Communications
95. A metagenomic portrait of the microbial community responsible for two decades of bioremediation of poly-contaminated groundwater
    Ernestina Hauptfeld, Jordi Pelkmans, Terry Huisman, Armin Anocic, Basten L. Snoek, F. A. Bastiaan von Meijenfeldt, Jan Gerritse, Johan L. VAN LEEUWEN, Gert Leurink, Arie van Lit et al. · 2022 · Water Research
96. AutoPeptideML: a study on how to build more trustworthy peptide bioactivity predictors
    Raúl Fernández-Díaz, Rodrigo Cossio-Pérez, Clement Agoni, Hoang Thanh Lam, Vanessa López, Denis C. Shields · 2024 · Bioinformatics
97. Pan-proteomics, a concept for unifying quantitative proteome measurements when comparing closely-related bacterial strains
    James A. Broadbent, Daniel A. Broszczak, Imalka U. K. Tennakoon, Flavia Huygens · 2016 · Expert Review of Proteomics
98. SOHPRED: a new bioinformatics tool for the characterization and prediction of human S-sulfenylation sites
    Xiaofeng Wang, Renxiang Yan, Jinyan Li, Jiangning Song · 2016 · Molecular BioSystems
99. Cross-species inference of long non-coding RNAs greatly expands the ruminant transcriptome
    Stephen J. Bush, Charity Muriuki, Mary E. B. McCulloch, Iseabail Farquhar, Emily L. Clark, David Arthur Hume · 2018 · Genetics Selection Evolution
100. Protein function space: viewing the limits or limited by our view?
     J. Raes, E. Harrington, Amoolya H. Singh, P. Bork · 2007 · Current Opinion in Structural Biology