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RNA-Seq with a novel glabrous-ZM24fl reveals some key lncRNAs and the associated targets in fiber initiation of cotton

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Human complete NFAT1 deficiency causes a triad of joint contractures, osteochondromas, and B-cell malignancy

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Expression of FOXP1 and Colorectal Cancer Prognosis

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Transcriptomic profiles of human foreskin fibroblast cells in response to orf virus

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Demodifying RNA for Transcriptomic Analyses of Archival Formalin-Fixed Paraffin-Embedded Samples

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A unified framework for unconstrained and constrained ordination of microbiome read count data

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Estrogen receptor alpha (ERα)–mediated coregulator binding and gene expression discriminates the toxic ERα agonist diethylstilbestrol (DES) from the endogenous ERα agonist 17β-estradiol (E2)

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RNA-seq of newly diagnosed patients in the PADIMAC study leads to a bortezomib/lenalidomide decision signature

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aFold – using polynomial uncertainty modelling for differential gene expression estimation from RNA sequencing data

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RFWD3 Participates in the Occurrence and Development of Colorectal Cancer via E2F1 Transcriptional Regulation of BIRC5

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Novel artificial nerve transplantation of human iPSC-derived neurite bundles enhanced nerve regeneration after peripheral nerve injury

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Pop’s Pipes: poplar gene expression data analysis pipelines

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An introduction to computational tools for differential binding analysis with ChIP‐seq data

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Leveraging RNA-Seq to Characterize Resistance to Brown Stem Rot and the Rbs3 Locus in Soybean

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Detection of Differentially Expressed Genes in Discrete Single-Cell RNA Sequencing Data Using a Hurdle Model With Correlated Random Effects

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Transforming growth factor beta signaling and decidual integrity in mice†

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Deficient spermiogenesis in mice lacking Rlim

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Inference of 3D genome architecture by modeling overdispersion of Hi-C data

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Sex-specific differences in transcriptome profiles of brain and muscle tissue of the tropical gar

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Silencing TRAIP suppresses cell proliferation and migration/invasion of triple negative breast cancer via RB-E2F signaling and EMT

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Localisation of nitrate-reducing and highly abundant microbial communities in the oral cavity

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Model-based clustering for identifying disease-associated SNPs in case-control genome-wide association studies

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Transcriptomic analysis reveals novel mechanisms of SARS‐CoV‐2 infection in human lung cells

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LATS1/2 control TGFB-directed epithelial-to-mesenchymal transition in the murine dorsal cranial neuroepithelium through YAP regulation

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Phylogenomic Distance Method for Analyzing Transcriptome Evolution Based on RNA-seq Data

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Integrative landscape of dysregulated signaling pathways of clinically distinct pancreatic cancer subtypes

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Unsupervised subtyping and methylation landscape of pancreatic ductal adenocarcinoma

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Molecular Subtypes of High-Grade Serous Ovarian Cancer across Racial Groups and Gene Expression Platforms

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MCMSeq: Bayesian hierarchical modeling of clustered and repeated measures RNA sequencing experiments

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Chloroplast Electron Chain, ROS Production, and Redox Homeostasis Are Modulated by COS-OGA Elicitation in Tomato (Solanum lycopersicum) Leaves

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Transcriptomic responses are sex-dependent in the skeletal muscle and liver in offspring of obese mice

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Cancer omics: From regulatory networks to clinical outcomes

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ETV2 primes hematoendothelial gene enhancers prior to hematoendothelial fate commitment

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Uncovering genetic and metabolite markers associated with resistance against anthracnose fruit rot in northern highbush blueberry

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Disruption of MAM integrity in mutant FUS oligodendroglial progenitors from hiPSCs

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Temporal Genomic Analysis of Homogeneous Tumor Models Reveals Key Regulators of Immune Evasion in Melanoma

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Statistical detection of differentially expressed genes based on RNA-seq: from biological to phylogenetic replicates

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Short communication: Vitamin D status and responses in dairy cows naturally infected with Mycobacterium avium ssp. paratuberculosis

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Investigating population‐scale allelic differential expression in wild populations of Oithona similis (Cyclopoida, Claus, 1866)

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A statistical framework for non-negative matrix factorization based on generalized dual divergence

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SorTn-seq: a high-throughput functional genomics approach to discovering regulators of bacterial gene expression

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Clustering high-throughput sequencing data with Poisson mixture models

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EGFR-STAT1 pathway drives fibrosis initiation in fibroinflammatory skin diseases

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MicroRNAs in Gingival Crevicular Fluid: An Observational Case-Control Study of Differential Expression in Periodontitis

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The characteristics of intratumoral microbial community reflect the development of lung adenocarcinoma

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Empirical Bayes Analysis of RNA-seq Data for Detection of Gene Expression Heterosis

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Significance tests for analyzing gene expression data with small sample sizes

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miR-452 Reverses Abnormal Glycosylation Modification of ERα and Estrogen Resistance in TNBC (Triple-Negative Breast Cancer) Through Targeting UGT1A1

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Hyperthermic intraperitoneal chemotherapy (HIPEC) with carboplatin induces distinct transcriptomic changes in ovarian tumor and normal tissues

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PLNseq: a multivariate Poisson lognormal distribution for high-throughput matched RNA-sequencing read count data

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contamDE: differential expression analysis of RNA-seq data for contaminated tumor samples

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Introductory Overview of Statistical Analysis of Microbiome Data

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Differential expression analyses reveal extensive transcriptional plasticity induced by temperature in New Zealand silver trevally ( Pseudocaranx georgianus )

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CATD: a reproducible pipeline for selecting cell-type deconvolution methods across tissues

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Targeting EGLN2/PHD1 protects motor neurons and normalizes the astrocytic interferon response

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Twist1 Transcriptional Targets in the Developing Atrio-Ventricular Canal of the Mouse

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New tools for characterizing early brown stem rot disease resistance signaling in soybean

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DECtp: Calling Differential Gene Expression Between Cancer and Normal Samples by Integrating Tumor Purity Information

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Higher frequency of vertebrate‐infecting viruses in the gut of infants born to mothers with type 1 diabetes

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License GPL (> = 3)

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