The DOI matches its Crossref record; 2 of the 2 references it cites were found in a registry or an index.
GEIGER: investigating evolutionary radiations
Abstract
Summary: GEIGER is a new software package, written in the R language, to describe evolutionary radiations. GEIGER can carry out simulations, parameter estimation and statistical hypothesis testing. Additionally, GEIGER's simulation algorithms can be used to analyze the statistical power of comparative approaches. Availability: This open source software is written entirely in the R language and is freely available through the Comprehensive R Archive Network (CRAN) at http://cran.r-project.org/. Contact: lukeh@uidaho.edu
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Evolutionary trees from DNA sequences: A maximum likelihood approach.
Felsenstein, J. (1981) · Journal of Molecular Evolution · doi:10.1007/bf01734359 · Cited by 14,571
The Ecology of Adaptive Radiation
Schluter, D. (2000) · doi:10.1093/oso/9780198505235.001.0001 · Cited by 4,974
Research works printed but not linked: 14
- Bortolussi, 2006, apTreeshape: statistical analysis of phylogenetic tree shape, Bioinformatics, 22, 363, 10.1093/bioinformatics/bti798 · DOI
- Butler, 2004, Phylogenetic comparative analysis: a modeling approach for adaptive evolution, Am. Nat, 164, 683, 10.1086/426002 · DOI · Paper page
- Freckleton, 2006, Detecting non-Brownian trait evolution in adaptive radiations, PLoS Biol, 4, 2104, 10.1371/journal.pbio.0040373 · DOI · Paper page
- Garland, 1993, Phylogenetic analysis of covariance by computer simulation, Syst. Biol, 42, 265, 10.1093/sysbio/42.3.265 · DOI · Paper page
- Harmon, 2003, Tempo and mode of evolutionary radiation in iguanian lizards, Science, 301, 961, 10.1126/science.1084786 · DOI · Paper page
- Magallón, 2001, Absolute diversification rates in angiosperm clades, Evolution, 55, 1762
- Nee, 2001, Inferring speciation rates from phylogenies, Evolution, 55, 661, 10.1554/0014-3820(2001)055[0661:ISRFP]2.0.CO;2 · DOI
- O'Meara, 2006, Testing for different rates of continuous trait evolution, Evolution, 60, 922
- Pagel, 1999, The maximum likelihood approach to reconstructing ancestral character states of discrete characters on phylogenies, Syst. Biol, 48, 612, 10.1080/106351599260184 · DOI · Paper page
- Pagel, 1999, Inferring the historical patterns of biological evolution, Nature, 401, 877, 10.1038/44766 · DOI · Paper page
- Paradis, 2004, APE: Analyses of Phylogenetics and Evolution in R language, Bioinformatics, 20, 289, 10.1093/bioinformatics/btg412 · DOI · Paper page
- Pybus, 2000, Testing macro-evolutionary models using incomplete molecular phylogenies, Proc. R. Soc. Lond. Ser. B, 267, 2267, 10.1098/rspb.2000.1278 · DOI · Paper page
- Rabosky, 2006, LASER: a maximum likelihood toolkit for detecting temporal shifts in diversification rates from molecular phylogenies, Evol. Bioinform. Online, 2006, 257
- Revell, 2007, A phylogenetic approach to determining the importance of constraint on phenotypic evolution in the neotropical lizard Anolis cristatellus, Evol. Ecol. Res, 9, 261
Cited by
Polyploidy and angiosperm diversification
Soltis, D. E., Albert, V. A., Leebens‐Mack, J., Bell, C. D., Paterson, A. H., Zheng, C., Sankoff, D., de Pamphilis, C. W., Wall, P. K., & Soltis, P. S. (2009) · American Journal of Botany · doi:10.3732/ajb.0800079 · Cited by 1,257
Phytools 2.0: an updated R ecosystem for phylogenetic comparative methods (and other things)
Revell, L. J. (2024) · PeerJ · doi:10.7717/peerj.16505 · Cited by 1,244
Comparative genomics reveals insights into avian genome evolution and adaptation
Zhang, G., Li, C., Li, Q., Li, B., Larkin, D. M., Lee, C., Storz, J. F., Antunes, A., Greenwold, M. J., Meredith, R. W., et al. (2014) · Science · doi:10.1126/science.1251385 · Cited by 1,055
The evolution of social monogamy in mammals
Lukas, D., & Clutton-Brock, T. H. (2013) · Science · doi:10.1126/science.1238677 · Cited by 678
Efficient comparative phylogenetics on large trees
Louca, S., & Doebeli, M. (2018) · Bioinformatics · doi:10.1093/bioinformatics/btx701 · Cited by 564
Metadata
- Authors
- Harmon, L. J., Weir, J. T., Brock, C. D., Glor, R. E., & Challenger, W.
- Venue
- Bioinformatics
- Publisher
- Oxford University Press (OUP)
- Published
- 2007-11-15
- Volume
- 24
- Issue
- 1
- Pages
- 129-131
- ISSN
- 1367-4803 (ISSN-L)
- 1367-4811
- OpenAlex
- W2117368100
- Cited by
- 2,470
- References
- 2
- FWCI
- 9.22
- Type
- journal article
- Language
- en
- Open access
- closed
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
How to cite
Cite CoChat for the checks on this page, and the paper for its own findings.
- This page
- CoChat. (2026). Citation check: GEIGER: investigating evolutionary radiations. https://app.cochat.ai/papers/10.1093/bioinformatics/btm538
- The paper
- Harmon, L. J., Weir, J. T., Brock, C. D., Glor, R. E., & Challenger, W. (2008). GEIGER: investigating evolutionary radiations. Bioinformatics. https://doi.org/10.1093/bioinformatics/btm538
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.