LibSBML: an API Library for SBML

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A brief history of COMBINE

Myers, C. J., Bader, G. D., Gleeson, P., Golebiewski, M., Hucka, M., Novère, N. G. L., Nickerson, D. P., Schreiber, F., & Waltemath, D. (2017) · Winter Simulation Conference · doi:10.1109/wsc.2017.8247840 · Cited by 10

Characterization of Clostridium ljungdahlii OTA1: a non-autotrophic hyper ethanol-producing strain

Whitham, J. M., Schulte, M. J., Bobay, B. G., Bruno-Bárcena, J. M., Chinn, M. S., Flickinger, M. C., Pawlak, J. J., & Grunden, A. M. (2016) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-016-7978-6 · Cited by 10

Genome-scale model of Rothia mucilaginosa predicts gene essentialities and reveals metabolic capabilities

Leonidou, N., Ostyn, L., Coenye, T., Crabbé, A., & Dräger, A. (2024) · Microbiology Spectrum · doi:10.1128/spectrum.04006-23 · Cited by 9

Python to accelerate embedded SoC design

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ESS: A Tool for Genome-Scale Quantification of Essentiality Score for Reaction/Genes in Constraint-Based Modeling

Zhang, C., Bidkhori, G., Benfeitas, R., Lee, S., Arif, M., Uhlén, M., & Mardinoğlu, A. (2018) · Frontiers in Physiology · doi:10.3389/fphys.2018.01355 · Cited by 9

The BioPAX Validator

Rodchenkov, I. V., Demir, E., Sander, C., & Bader, G. D. (2013) · Bioinformatics · doi:10.1093/bioinformatics/btt452 · Cited by 9

A Novel Mathematical Model Describing Adaptive Cellular Drug Metabolism and Toxicity in the Chemoimmune System

Tóth, A., Brózik, A., Szakács, G., Sarkadi, B., & Hegedűs, T. (2015) · PLoS ONE · doi:10.1371/journal.pone.0115533 · Cited by 9

Systems Biology Markup Language (SBML)

Hucka, M. (2013) · Springer eBooks · doi:10.1007/978-1-4419-9863-7_1091 · Cited by 11

Characteristics of mathematical modeling languages that facilitate model reuse in systems biology: A software engineering perspectivePreprint

Schölzel, C., Blesius, V., Ernst, G., & Dominik, A. (2019) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2019.12.16.875260 · Cited by 9

Systems Biology LibSBML: An API Library for SBML

Bornstein, B. J., Keating, S., Jouraku, A., & Hucka, M. (2016)

BIOINFORMATICS APPLICATIONS NOTE doi:10.1093/bioinformatics/btn051 Systems biology LibSBML: an API Library for SBML

Bornstein, B. J., Keating, S., Jouraku, A., & Hucka, M. (2008)

JSBMLPreprint

Rodríguez, N., & Dräger, A. (2010) · Nature Precedings · doi:10.1038/npre.2010.4986.1

JSBML: a flexible and entirely Java-based library for working with SBMLPreprint

Jouraku, A., Novère, N. G. L., Zell, A., Hucka, M., Rodríguez, N., Dumousseau, M., Dräger, A., Wrzodek, C., Dörr, A., & Keating, S. (2011) · Nature Precedings · doi:10.1038/npre.2011.6718.1

Supporting SBML as a Model Exchange Format in Software Applications

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