The DOI matches its Crossref record.
DNAPlotter: circular and linear interactive genome visualization
Open accessAbstract
Summary: DNAPlotter is an interactive Java application for generating circular and linear representations of genomes. Making use of the Artemis libraries to provide a user-friendly method of loading in sequence files (EMBL, GenBank, GFF) as well as data from relational databases, it filters features of interest to display on separate user-definable tracks. It can be used to produce publication quality images for papers or web pages. Availability: DNAPlotter is freely available (under a GPL licence) for download (for MacOSX, UNIX and Windows) at the Wellcome Trust Sanger Institute web sites: http://www.sanger.ac.uk/Software/Artemis/circular/ Contact: artemis@sanger.ac.uk
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cited by
BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons
Alikhan, N.-F., Petty, N. K., Ben Zakour, N. L., & Beatson, S. A. (2011) · BMC Genomics · doi:10.1186/1471-2164-12-402 · Cited by 3,303
Explosive cell lysis as a mechanism for the biogenesis of bacterial membrane vesicles and biofilms
Turnbull, L., Toyofuku, M., Hynen, A. L., Kurosawa, M., Pessi, G., Petty, N. K., Osvath, S. R., Cárcamo-Oyarce, G., Gloag, E. S., Shimoni, R., et al. (2016) · Nature Communications · doi:10.1038/ncomms11220 · Cited by 709
Bacterial membrane vesicles transport their DNA cargo into host cells
Bitto, N. J., Chapman, R., Pidot, S., Costin, A., Lo, C., Choi, J., D’Cruze, T., Reynolds, E. C., Dashper, S. G., Turnbull, L., et al. (2017) · Scientific Reports · doi:10.1038/s41598-017-07288-4 · Cited by 378
Genome-Wide Comparison of Medieval and Modern Mycobacterium leprae
Schuenemann, V. J., Singh, P., Mendum, T. A., Krause-Kyora, B., Jäger, G., Bos, K. I., Herbig, A., Economou, C., Benjak, A., Busso, P., et al. (2013) · Science · doi:10.1126/science.1238286 · Cited by 358
Legume growth-promoting rhizobia: An overview on the Mesorhizobium genus
Laranjo, M., Alexandre, A., & Oliveira, S. (2014) · Microbiological Research · doi:10.1016/j.micres.2013.09.012 · Cited by 326
Metadata
- Authors
- Carver, T., Thomson, N., Bleasby, A., Berriman, M., & Parkhill, J.
- Venue
- Bioinformatics
- Publisher
- Oxford University Press (OUP)
- Published
- 2008-11-05
- Volume
- 25
- Issue
- 1
- Pages
- 119-120
- ISSN
- 1367-4803 (ISSN-L)
- 1367-4811
- OpenAlex
- W2121703775
- Cited by
- 887
- References
- 0
- FWCI
- 6.82
- Type
- journal article
- Language
- en
- Open access
- hybrid
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
How to cite
Cite CoChat for the checks on this page, and the paper for its own findings.
- This page
- CoChat. (2026). Citation check: DNAPlotter: circular and linear interactive genome visualization. https://app.cochat.ai/papers/10.1093/bioinformatics/btn578
- The paper
- Carver, T., Thomson, N., Bleasby, A., Berriman, M., & Parkhill, J. (2009). DNAPlotter: circular and linear interactive genome visualization. Bioinformatics. https://doi.org/10.1093/bioinformatics/btn578
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
