The DOI matches its Crossref record; 6 of the 6 references it cites were found in a registry or an index.
Tablet-next generation sequence assembly visualization.
Open accessAbstract
SUMMARY: Tablet is a lightweight, high-performance graphical viewer for next-generation sequence assemblies and alignments. Supporting a range of input assembly formats, Tablet provides high-quality visualizations showing data in packed or stacked views, allowing instant access and navigation to any region of interest, and whole contig overviews and data summaries. Tablet is both multi-core aware and memory efficient, allowing it to handle assemblies containing millions of reads, even on a 32-bit desktop machine. AVAILABILITY: Tablet is freely available for Microsoft Windows, Apple Mac OS X, Linux and Solaris. Fully bundled installers can be downloaded from http://bioinf.scri.ac.uk/tablet in 32- and 64-bit versions.
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“Moreover, graphical visualization tools such as Tablet [56] may be very valuable for assessing assembly quality [55].”
From Digital Gene Expression Analysis Based on Integrated De Novo Transcriptome Assembly of Sweet Potato [Ipomoea batatas (L.) Lam.] (2012) · cites this paper as [56]
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Cites
The Sequence Alignment/Map format and SAMtools
Li, H., Handsaker, B., Wysoker, A., Fennell, T., Ruan, J., Homer, N., Marth, G., Abecasis, G., Durbin, R., & 1000 Genome Project Data Processing Subgroup (2009) · Bioinformatics · doi:10.1093/bioinformatics/btp352 · Cited by 62,041
Genome sequencing in microfabricated high-density picolitre reactors
Margulies, M., Egholm, M., Altman, W. E., Attiya, S., Bader, J. S., Bemben, L. A., Berka, J., Braverman, M. S., Chen, Y.-J., Chen, Z., et al. (2005) · Nature · doi:10.1038/nature03959 · Cited by 7,693
Consed: a graphical tool for sequence finishing.Preprint
Gordon, D., Abajian, C., & Green, P. (1998) · Genome Research · doi:10.1101/gr.8.3.195 · Cited by 3,706
EagleView: A genome assembly viewer for next-generation sequencing technologiesPreprint
Huang, W., & Marth, G. (2008) · Genome Research · doi:10.1101/gr.076067.108 · Cited by 125
Hawkeye: an interactive visual analytics tool for genome assemblies
Schatz, M. C., Phillippy, A. M., Shneiderman, B., & Salzberg, S. L. (2007) · Genome biology · doi:10.1186/gb-2007-8-3-r34 · Cited by 91
MapView: visualization of short reads alignment on a desktop computer
Bao, H., Guo, H., Wang, J., Zhou, R., Lu, X., & Shi, S. (2009) · Bioinformatics · doi:10.1093/bioinformatics/btp255 · Cited by 79
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Robinson, J. T., Thorvaldsdóttir, H., Winckler, W., Guttman, M., Lander, E. S., Getz, G., & Mesirov, J. P. (2011) · Nature Biotechnology · doi:10.1038/nbt.1754 · Cited by 15,390
Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration
Thorvaldsdottir, H., Robinson, J. T., & Mesirov, J. P. (2013) · Briefings in Bioinformatics · doi:10.1093/bib/bbs017 · Cited by 9,049
Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
Chin, C.-S., Alexander, D. H., Marks, P., Klammer, A. A., Drake, J., Heiner, C., Clum, A., Copeland, A., Huddleston, J., Eichler, E. E., et al. (2013) · Nature Methods · doi:10.1038/nmeth.2474 · Cited by 4,029
Unipro UGENE: a unified bioinformatics toolkit
Okonechnikov, K., Golosova, O., Fursov, M., & the UGENE team (2012) · Bioinformatics · doi:10.1093/bioinformatics/bts091 · Cited by 3,181
Hahn, C., Bachmann, L., & Chevreux, B. (2013) · Nucleic Acids Research · doi:10.1093/nar/gkt371 · Cited by 1,854
Metadata
- Authors
- Milne, I., Bayer, M., Cardle, L., Shaw, P., Stephen, G., Wright, F., & Marshall, D.
- Affiliations
- Biomathematics and Statistics Scotland (GB)
- Corresponding author
- Marshall, David
- Venue
- Bioinformatics
- Publisher
- Oxford University Press (OUP)
- Published
- 2009-12-04
- Volume
- 26
- Issue
- 3
- Pages
- 401-402
- ISSN
- 1367-4803 (ISSN-L)
- 1367-4811
- PMC
- PMC2815658
- OpenAlex
- W2122270655
- Cited by
- 666
- References
- 6
- Citations by year
- 2026: 9 · 2025: 17 · 2024: 22 · 2023: 23 · 2022: 33 · 2021: 54 · 2020: 33 · 2019: 33 · 2018: 48 · 2017: 39 · 2016: 56 · 2015: 52 · 2014: 46 · 2013: 73 · 2012: 72
- FWCI
- 16.89
- Type
- journal article
- Language
- en
- Open access
- hybrid
- doi.org
- Licence
- Locations
- Bioinformatics (publishedVersion, cc-by-nc)
- PubMed Central (publishedVersion, cc-by-nc)
- PubMed (publishedVersion)
- Funders
- Scottish Funding Council
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Phylogenetic Studies
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genetics, Bioinformatics, and Biomedical Research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Fractal and DNA sequence analysis
- Keywords
- tablets, next-generation sequencing, genome assembly, sequence alignment, multi-core computing, memory efficiency
- MeSH terms
- Base Sequence, Software, User-Computer Interface, Sequence Alignment, Sequence Analysis, DNA, Computational Biology, Databases, Genetic
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