Tablet-next generation sequence assembly visualization.

The Sequence Alignment/Map format and SAMtools

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Genome sequencing in microfabricated high-density picolitre reactors

Margulies, M., Egholm, M., Altman, W. E., Attiya, S., Bader, J. S., Bemben, L. A., Berka, J., Braverman, M. S., Chen, Y.-J., Chen, Z., et al. (2005) · Nature · doi:10.1038/nature03959 · Cited by 7,693

Consed: a graphical tool for sequence finishing.Preprint

Gordon, D., Abajian, C., & Green, P. (1998) · Genome Research · doi:10.1101/gr.8.3.195 · Cited by 3,706

EagleView: A genome assembly viewer for next-generation sequencing technologiesPreprint

Huang, W., & Marth, G. (2008) · Genome Research · doi:10.1101/gr.076067.108 · Cited by 125

Hawkeye: an interactive visual analytics tool for genome assemblies

Schatz, M. C., Phillippy, A. M., Shneiderman, B., & Salzberg, S. L. (2007) · Genome biology · doi:10.1186/gb-2007-8-3-r34 · Cited by 91

MapView: visualization of short reads alignment on a desktop computer

Bao, H., Guo, H., Wang, J., Zhou, R., Lu, X., & Shi, S. (2009) · Bioinformatics · doi:10.1093/bioinformatics/btp255 · Cited by 79

Integrative genomics viewer

Robinson, J. T., Thorvaldsdóttir, H., Winckler, W., Guttman, M., Lander, E. S., Getz, G., & Mesirov, J. P. (2011) · Nature Biotechnology · doi:10.1038/nbt.1754 · Cited by 15,390

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

Thorvaldsdottir, H., Robinson, J. T., & Mesirov, J. P. (2013) · Briefings in Bioinformatics · doi:10.1093/bib/bbs017 · Cited by 9,049

Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data

Chin, C.-S., Alexander, D. H., Marks, P., Klammer, A. A., Drake, J., Heiner, C., Clum, A., Copeland, A., Huddleston, J., Eichler, E. E., et al. (2013) · Nature Methods · doi:10.1038/nmeth.2474 · Cited by 4,029

Unipro UGENE: a unified bioinformatics toolkit

Okonechnikov, K., Golosova, O., Fursov, M., & the UGENE team (2012) · Bioinformatics · doi:10.1093/bioinformatics/bts091 · Cited by 3,181

Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads—a baiting and iterative mapping approach

Hahn, C., Bachmann, L., & Chevreux, B. (2013) · Nucleic Acids Research · doi:10.1093/nar/gkt371 · Cited by 1,854

Genomics and epidemiology of the P.1 SARS-CoV-2 lineage in Manaus, Brazil

Faria, N. R., Mellan, T. A., Whittaker, C., Claro, I. M., Candido, D. D. S., Mishra, S., Crispim, M. A. E., Sales, F. C. S., Hawryluk, I., McCrone, J. T., et al. (2021) · Science · doi:10.1126/science.abh2644 · Cited by 1,461

A chromosome conformation capture ordered sequence of the barley genome

Mascher, M., Gundlach, H., Himmelbach, A., Beier, S., Twardziok, S. O., Wicker, T., Radchuk, V., Dockter, C., Hedley, P. E., Russell, J., et al. (2017) · Nature · doi:10.1038/nature22043 · Cited by 1,450

Performance comparison of benchtop high-throughput sequencing platforms

Loman, N. J., Misra, R., Dallman, T. J., Constantinidou, C., Gharbia, S. E., Wain, J. R., & Pallen, M. J. (2012) · Nature Biotechnology · doi:10.1038/nbt.2198 · Cited by 1,383

Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data

Carver, T. J., Harris, S. R., Berriman, M., Parkhill, J., & Keane, J. A. (2011) · Bioinformatics · doi:10.1093/bioinformatics/btr703 · Cited by 1,228

Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples

Quick, J., Grubaugh, N. D., Pullan, S. T., Claro, I. M., Smith, A. D., Gangavarapu, K., Oliveira, G., Robles-Sikisaka, R., Rogers, T. F., Beutler, N. A., et al. (2017) · Nature Protocols · doi:10.1038/nprot.2017.066 · Cited by 1,190

Uncovering the roles of rare variants in common disease through whole-genome sequencing

Cirulli, E. T., & Goldstein, D. B. (2010) · Nature Reviews Genetics · doi:10.1038/nrg2779 · Cited by 1,136

Using Tablet for visual exploration of second-generation sequencing data

Milne, I., Stephen, G., Bayer, M., Cock, P., Pritchard, L., Cardle, L., Shaw, P. D., & Marshall, D. (2012) · Briefings in Bioinformatics · doi:10.1093/bib/bbs012 · Cited by 981

A survey of sequence alignment algorithms for next-generation sequencing

Li, H., & Homer, N. (2010) · Briefings in Bioinformatics · doi:10.1093/bib/bbq015 · Cited by 875

Navigating the tip of the genomic iceberg: Next‐generation sequencing for plant systematics

Straub, S. C. K., Parks, M., Weitemier, K., Fishbein, M., Cronn, R., & Liston, A. (2011) · American Journal of Botany · doi:10.3732/ajb.1100335 · Cited by 712

Applications of next-generation sequencing to phylogeography and phylogenetics

McCormack, J. E., Hird, S. M., Zellmer, A. J., Carstens, B. C., & Brumfield, R. T. (2011) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2011.12.007 · Cited by 666

Evaluation of genomic high-throughput sequencing data generated on Illumina HiSeq and Genome Analyzer systems

Minoche, A. E., Dohm, J. C., & Himmelbauer, H. (2011) · Genome biology · doi:10.1186/gb-2011-12-11-r112 · Cited by 620

Sequence-specific error profile of Illumina sequencers

Nakamura, K., Oshima, T., Morimoto, T., Ikeda, S., Yoshikawa, H., Shiwa, Y., Ishikawa, S., Linak, M. C., Hirai, A. M., Takahashi, H., et al. (2011) · Nucleic Acids Research · doi:10.1093/nar/gkr344 · Cited by 619

Evolution and epidemic spread of SARS-CoV-2 in Brazil

Candido, D. S., Claro, I. M., de Jesus, J. G., Souza, W. M., Moreira, F. R. R., Dellicour, S., Mellan, T. A., du Plessis, L., Pereira, R. H. M., Sales, F. C. S., et al. (2020) · Science · doi:10.1126/science.abd2161 · Cited by 573

Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley

Comadran, J., Kilian, B., Russell, J., Ramsay, L., Stein, N., Ganal, M. W., Shaw, P. D., Bayer, M., Thomas, W. T. B., Marshall, D., et al. (2012) · Nature Genetics · doi:10.1038/ng.2447 · Cited by 485

Antagonists to the Wnt Cascade Exhibit Sex-Specific Expression in Gonads of Sexually Mature Shovelnose Sturgeon

Amberg, J. J., Goforth, R. R., & Sepúlveda, M. S. (2013) · Sexual Development · doi:10.1159/000354280 · Cited by 475

Chromatin accessibility: a window into the genome

Tsompana, M., & Buck, M. J. (2014) · Epigenetics & Chromatin · doi:10.1186/1756-8935-7-33 · Cited by 473

Uncovering the Complexity of Transcriptomes with RNA-Seq

Costa, V., Angelini, C., Feis, I. D., & Ciccodicola, A. (2010) · BioMed Research International · doi:10.1155/2010/853916 · Cited by 460

High-throughput bacterial genome sequencing: an embarrassment of choice, a world of opportunity

Loman, N. J., Constantinidou, C., Chan, J. Z.-M., Halachev, M. R., Sergeant, M. J., Penn, C. W., Robinson, E., & Pallen, M. J. (2012) · Nature Reviews Microbiology · doi:10.1038/nrmicro2850 · Cited by 426

Resistance to Sharka in Apricot: Comparison of Phase-Reconstructed Resistant and Susceptible Haplotypes of ‘Lito’ Chromosome 1 and Analysis of Candidate Genes

Mori, G. D., Falchi, R., Testolin, R., Bassi, D., Savazzini, F., Dondini, L., Tartarini, S., Palmisano, F., Minafra, A., Spadotto, A., et al. (2019) · Frontiers in Plant Science · doi:10.3389/fpls.2019.01576 · Cited by 376

Biology and Taxonomy of crAss-like Bacteriophages, the Most Abundant Virus in the Human Gut

Guerin, E., Shkoporov, A. N., Stockdale, S. R., Clooney, A. G., Ryan, F. J., Sutton, T., Draper, L. A., González-Tortuero, E., Ross, R. P., & Hill, C. (2018) · Cell Host & Microbe · doi:10.1016/j.chom.2018.10.002 · Cited by 307

SNP Discovery through Next-Generation Sequencing and Its Applications

Kumar, S. D., Banks, T. W., & Cloutier, S. (2012) · International Journal of Plant Genomics · doi:10.1155/2012/831460 · Cited by 337

Global Dissection of Alternative Splicing in Paleopolyploid Soybean

Shen, Y., Zhou, Z., Wang, Z., Li, W., Fang, C. Q., Wu, M., Ma, Y., Liu, T., Kong, L., Peng, D., et al. (2014) · The Plant Cell · doi:10.1105/tpc.114.122739 · Cited by 282

Real-time DNA barcoding in a rainforest using nanopore sequencing: opportunities for rapid biodiversity assessments and local capacity building

Pomerantz, A. F., Peñafiel, N., Arteaga, A., Bustamante, L., Pichardo, F., Coloma, L. A., Barrio-Amorós, C. L., Salazar‐Valenzuela, D., & Prost, S. (2018) · GigaScience · doi:10.1093/gigascience/giy033 · Cited by 256

Comparing de novo assemblers for 454 transcriptome data

Kumar, S., & Blaxter, M. L. (2010) · BMC Genomics · doi:10.1186/1471-2164-11-571 · Cited by 255

A new grapevine virus discovered by deep sequencing of virus- and viroid-derived small RNAs in Cv Pinot gris

Giampetruzzi, A., Roumi, V., Roberto, R., Malossini, U., Yoshikawa, N., Notte, P. L., Terlizzi, F., Credi, R., & Saldarelli, P. (2011) · Virus Research · doi:10.1016/j.virusres.2011.10.010 · Cited by 242

High-resolution human cytomegalovirus transcriptome

Gatherer, D., Seirafian, S., Cunningham, C., Holton, M., Dargan, D. J., Baluchova, K., Hector, R. D., Galbraith, J., Herzyk, P., Wilkinson, G. W. G., et al. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1115861108 · Cited by 229

Designing a transcriptome next‐generation sequencing project for a nonmodel plant species1

Strickler, S. R., Bombarely, A., & Mueller, L. A. (2012) · American Journal of Botany · doi:10.3732/ajb.1100292 · Cited by 232

Gap5—editing the billion fragment sequence assembly

Bonfield, J., & Whitwham, A. (2010) · Bioinformatics · doi:10.1093/bioinformatics/btq268 · Cited by 223

Evolution and Diversity in Human Herpes Simplex Virus Genomes

SZPARA, M. L., Gatherer, D., Ochoa, A., Greenbaum, B. D., Dolan, A., Bowden, R. J., Enquist, L. W., Legendre, M., & Davison, A. J. (2013) · Journal of Virology · doi:10.1128/jvi.01987-13 · Cited by 222

Principles of transcriptome analysis and gene expression quantification: an RNA ‐seq tutorial

Wolf, J. B. W. (2013) · Molecular Ecology Resources · doi:10.1111/1755-0998.12109 · Cited by 235

De novo assembly of short sequence reads

Paszkiewicz, K., & Studholme, D. J. (2010) · Briefings in Bioinformatics · doi:10.1093/bib/bbq020 · Cited by 204

Discovery of a novel methanogen prevalent in thawing permafrost

Mondav, R., Woodcroft, B. J., Kim, E., Mccalley, C. K., Hodgkins, S. B., Crill, P., Chanton, J. P., Hurst, G. B., VerBerkmoes, N. C., SALESKA, S. R., et al. (2014) · Nature Communications · doi:10.1038/ncomms4212 · Cited by 213

Chloroplast genome of Hibiscus rosa-sinensis (Malvaceae): Comparative analyses and identification of mutational hotspots

Abdullah, A., Mehmood, F., Shahzadi, I., Waseem, S., Mirza, B., Ahmed, I., & Waheed, M. T. (2019) · Genomics · doi:10.1016/j.ygeno.2019.04.010 · Cited by 198

Genome Reduction and Co-evolution between the Primary and Secondary Bacterial Symbionts of Psyllids

Sloan, D. B., & Moran, N. A. (2012) · Molecular Biology and Evolution · doi:10.1093/molbev/mss180 · Cited by 200

Why barcode? High-throughput multiplex sequencing of mitochondrial genomes for molecular systematics

Timmermans, M. J. T. N., Dodsworth, S., Culverwell, C. L., Bocák, L., AHRENS, D. C., Littlewood, D. T. J., Pons, J., & Vogler, A. P. (2010) · Nucleic Acids Research · doi:10.1093/nar/gkq807 · Cited by 185

A gene-by-gene population genomics platform: de novo assembly, annotation and genealogical analysis of 108 representative Neisseria meningitidis genomes

Bratcher, H. B., Corton, C. H., Jolley, K. A., Parkhill, J., & Maiden, M. C. J. (2014) · BMC Genomics · doi:10.1186/1471-2164-15-1138 · Cited by 184

Mutational Dynamics of Aroid Chloroplast Genomes

Ahmed, I., Biggs, P. J., Matthews, P. J., Collins, L. J., Hendy, M. D., & Lockhart, P. J. (2012) · Genome Biology and Evolution · doi:10.1093/gbe/evs110 · Cited by 173

Digital Gene Expression Analysis Based on Integrated De Novo Transcriptome Assembly of Sweet Potato [Ipomoea batatas (L.) Lam.]

Tao, X., Gu, Y.-H., Wang, H.-Y., Zheng, W., Li, X., Zhao, C.-W., & Zhang, Y.-Z. (2012) · PLoS ONE · doi:10.1371/journal.pone.0036234 · Cited by 168

The plastid genome of the mycoheterotrophic Corallorhiza striata (Orchidaceae) is in the relatively early stages of degradation

Barrett, C. F., & Davis, J. I. (2012) · American Journal of Botany · doi:10.3732/ajb.1200256 · Cited by 171

GenomeView: a next-generation genome browser

Abeel, T., Parys, T. V., Saeys, Y., Galagan, J. E., & de Peer, Y. V. (2011) · Nucleic Acids Research · doi:10.1093/nar/gkr995 · Cited by 165

A recurring syndrome of accelerated plastid genome evolution in the angiosperm tribe Sileneae (Caryophyllaceae)

Sloan, D. B., Triant, D. A., Forrester, N. J., Bergner, L. M., Wu, M., & TAYLOR, D. R. (2013) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2013.12.004 · Cited by 164

Genome analysis and comparative genomics of a Giardia intestinalis assemblage E isolate

Jerlström-Hultqvist, J., Franzén, O., Ankarklev, J., Xu, F., Nohýnková, E., Andersson, J. O., Svärd, S. G., & Andersson, B. (2010) · BMC Genomics · doi:10.1186/1471-2164-11-543 · Cited by 161

Genome skimming reveals the origin of the Jerusalem Artichoke tuber crop species: neither from Jerusalem nor an artichoke

Bock, D. G., Kane, N. C., Ebert, D., & Rieseberg, L. H. (2013) · New Phytologist · doi:10.1111/nph.12560 · Cited by 154

Comparative Genomics of Carp Herpesviruses

Davison, A. J., Kurobe, T., Gatherer, D., Cunningham, C., Korf, I. F., Fukuda, H., Hedrick, R. P., & Waltzek, T. B. (2012) · Journal of Virology · doi:10.1128/jvi.03206-12 · Cited by 153

Characterization of the resistome in manure, soil and wastewater from dairy and beef production systems

Noyes, N. R., Yang, X., Linke, L., Magnuson, R. J., Cook, S. R., Zaheer, R., Yang, H., Woerner, D. R., Geornaras, I., McArt, J. A. A., et al. (2016) · Scientific Reports · doi:10.1038/srep24645 · Cited by 156

Chloroplast genome sequences of Artemisia maritima and Artemisia absinthium: Comparative analyses, mutational hotspots in genus Artemisia and phylogeny in family Asteraceae

Shahzadi, I., Abdullah, A., Mehmood, F., Ali, Z., Ahmed, I., & Mirza, B. (2019) · Genomics · doi:10.1016/j.ygeno.2019.08.016 · Cited by 148

Characterization of Withania somnifera chloroplast genome and its comparison with other selected species of Solanaceae

Mehmood, F., Abdullah, A., Shahzadi, I., Ahmed, I., Waheed, M. T., & Mirza, B. (2019) · Genomics · doi:10.1016/j.ygeno.2019.08.024 · Cited by 141

Within-Host Evolution of Burkholderia pseudomallei over a Twelve-Year Chronic Carriage Infection

Price, E. P., Sarovich, D. S., Mayo, M. J., Tuanyok, A., Drees, K. P., Kaestli, M., Beckstrom‐Sternberg, S. M., Babic-Sternberg, J. S., Kidd, T. J., Bell, S. C., et al. (2013) · mBio · doi:10.1128/mbio.00388-13 · Cited by 134

Next-generation sequencing technologies: breaking the sound barrier of human genetics

Bahassi, E. M., & Stambrook, P. J. (2014) · Mutagenesis · doi:10.1093/mutage/geu031 · Cited by 138

Use of next‐generation sequencing for the identification and characterization of M aize chlorotic mottle virus and S ugarcane mosaic virus causing maize lethal necrosis in K enya

Adams, I. P., Miano, D. W., Kinyua, Z. M., Wangai, A. W., Kimani, E. N., Phiri, N. A., Reeder, R., Harju, V., Glover, R. H., Hany, U., et al. (2012) · Plant Pathology · doi:10.1111/j.1365-3059.2012.02690.x · Cited by 133

Genetic Exchange among Bdelloid Rotifers Is More Likely Due to Horizontal Gene Transfer Than to Meiotic Sex

Debortoli, N., Li, X., Eyres, I., Fontaneto, D., Hespeels, B., Tang, C. Q., Flot, J., & Doninck, K. V. (2016) · Current Biology · doi:10.1016/j.cub.2016.01.031 · Cited by 130

CancerDR: Cancer Drug Resistance Database

Kumar, R., Chaudhary, K., Gupta, S., Singh, H., Kumar, S., Gautam, A., Kapoor, P., & Raghava, G. P. S. (2013) · Scientific Reports · doi:10.1038/srep01445 · Cited by 129

Gene amplification of 5-enol-pyruvylshikimate-3-phosphate synthase in glyphosate-resistant Kochia scoparia

Wiersma, A. T., Gaines, T. A., Preston, C. D., Hamilton, J. P., Giacomini, D. A., Buell, C. R., Leach, J. E., & Westra, P. H. (2014) · Planta · doi:10.1007/s00425-014-2197-9 · Cited by 129

Genome‐wide identification of novel small RNAs in Pseudomonas aeruginosa

Gómez‐Lozano, M., Marvig, R. L., Molin, S., & Long, K. S. (2012) · Environmental Microbiology · doi:10.1111/j.1462-2920.2012.02759.x · Cited by 124

From next-generation resequencing reads to a high-quality variant data set

Pfeifer, S. P. (2016) · Heredity · doi:10.1038/hdy.2016.102 · Cited by 126

Next Generation Sequencing in Predicting Gene Function in Podophyllotoxin Biosynthesis

Marques, J. V., Kim, K., Lee, C., Costa, M. A., May, G. D., Crow, J., Davin, L. B., & Lewis, N. (2012) · Journal of Biological Chemistry · doi:10.1074/jbc.m112.400689 · Cited by 121

Plastid genomes and deep relationships among the commelinid monocot angiosperms

Barrett, C. F., Davis, J. I., Leebens‐Mack, J., Conran, J. G., & Stevenson, D. W. (2012) · Cladistics · doi:10.1111/j.1096-0031.2012.00418.x · Cited by 121

Building a model: developing genomic resources for common milkweed (Asclepias syriaca) with low coverage genome sequencing

Straub, S. C. K., Fishbein, M., Livshultz, T., Foster, Z., Parks, M., Weitemier, K., Cronn, R., & Liston, A. (2011) · BMC Genomics · doi:10.1186/1471-2164-12-211 · Cited by 121

Multiple Mitochondrial Introgression Events and Heteroplasmy in Trypanosoma cruzi Revealed by Maxicircle MLST and Next Generation Sequencing

Messenger, L. A., Llewellyn, M. S., Bhattacharyya, T., Franzén, O., Lewis, M. D., Ramírez, J. D., Carrasco, H. J., Andersson, B., & Miles, M. A. (2012) · PLoS neglected tropical diseases · doi:10.1371/journal.pntd.0001584 · Cited by 123

Identification and Characterization of miRNA Transcriptome in Potato by High-Throughput Sequencing

Zhang, R., Marshall, D., Bryan, G. J., & Hornyik, C. (2013) · PLoS ONE · doi:10.1371/journal.pone.0057233 · Cited by 119

iAssembler: a package for de novo assembly of Roche-454/Sanger transcriptome sequences

Zheng, Y., Zhao, L., Gao, J., & Fei, Z. (2011) · BMC Bioinformatics · doi:10.1186/1471-2105-12-453 · Cited by 120

Comparative transcriptomics and proteomics of three different aphid species identifies core and diverse effector sets

Thorpe, P., Cock, P., & Bos, J. I. B. (2016) · BMC Genomics · doi:10.1186/s12864-016-2496-6 · Cited by 121

A spliced latency-associated VZV transcript maps antisense to the viral transactivator gene 61

Depledge, D. P., Ouwendijk, W. J. D., Sadaoka, T., Braspenning, S. E., Mori, Y., Cohrs, R. J., Verjans, G. M. G. M., & Breuer, J. (2018) · Nature Communications · doi:10.1038/s41467-018-03569-2 · Cited by 119

From Omics to Multi-Omics: A Review of Advantages and Tradeoffs

Hayes, C. N., Nakahara, H., Ono, A., Tsuge, M., & Oka, S. (2024) · Genes · doi:10.3390/genes15121551 · Cited by 119

Origin and domestication of papaya Y h chromosomePreprint

VanBuren, R., Zeng, F., Chen, C., Zhang, J., Wai, C. M., Han, J. O., Aryal, R., Gschwend, A. R., Wang, J., Na, J.-K., et al. (2015) · Genome Research · doi:10.1101/gr.183905.114 · Cited by 118

The Elusive Nature of Adaptive Mitochondrial DNA Evolution of an Arctic Lineage Prone to Frequent Introgression

Melo‐Ferreira, J., Vilela, J. E. R., Fonseca, M. M., da Fonseca, R. R., Boursot, P., & Alves, P. C. (2014) · Genome Biology and Evolution · doi:10.1093/gbe/evu059 · Cited by 115

Visualizing genome and systems biology: technologies, tools, implementation techniques and trends, past, present and future

Pavlopoulos, G. A., Malliarakis, D., Papanikolaou, N., Θεοδοσίου, Θ., Enright, A. J., & Iliopoulos, I. (2015) · GigaScience · doi:10.1186/s13742-015-0077-2 · Cited by 118

The Mitochondrial Genome of Soybean Reveals Complex Genome Structures and Gene Evolution at Intercellular and Phylogenetic Levels

Chang, S., Wang, Y., Lu, J., Gai, J., Li, J., Chu, P., Guan, R., & Zhao, T. (2013) · PLoS ONE · doi:10.1371/journal.pone.0056502 · Cited by 114

Replicon-Dependent Bacterial Genome Evolution: The Case of Sinorhizobium meliloti

Galardini, M., Pini, F., Bazzicalupo, M., Biondi, E. G., & Mengoni, A. (2013) · Genome Biology and Evolution · doi:10.1093/gbe/evt027 · Cited by 112

Savant: genome browser for high-throughput sequencing data

Fiume, M., Williams, V. R., Brook, A. L., & Brudno, M. (2010) · Bioinformatics · doi:10.1093/bioinformatics/btq332 · Cited by 112

MinION nanopore sequencing of an influenza genome

Wang, J. (2015) · Frontiers in Microbiology · doi:10.3389/fmicb.2015.00766 · Cited by 111

Resolving ancient radiations: can complete plastid gene sets elucidate deep relationships among the tropical gingers (Zingiberales)?

Barrett, C. F., Specht, C. D., Leebens‐Mack, J., Stevenson, D. W., Zomlefer, W. B., & Davis, J. I. (2013) · Annals of Botany · doi:10.1093/aob/mct264 · Cited by 110

Chemical and transcriptional responses of Norway spruce genotypes with different susceptibility to Heterobasidion spp. infection

Danielsson, M., Lundén, K., Elfstrand, M., Hu, J., Zhao, T., Arnerup, J., Ihrmark, K., Swedjemark, G., Borg‐Karlson, A., & Stenlid, J. (2011) · BMC Plant Biology · doi:10.1186/1471-2229-11-154 · Cited by 108

Asexual genome evolution in the apomictic R anunculus auricomus complex: examining the effects of hybridization and mutation accumulation

Pellino, M., Hojsgaard, D., Schmutzer, T., Scholz, U., Hörandl, E., Vogel, H., & Sharbel, T. F. (2013) · Molecular Ecology · doi:10.1111/mec.12533 · Cited by 107

Origin and Spread of Bos taurus: New Clues from Mitochondrial Genomes Belonging to Haplogroup T1

Bonfiglio, S., Ginja, C., De Gaetano, A., Achilli, A., Olivieri, A., Colli, L., Tesfaye, K., Agha, S. H., Gama, L. T., Cattonaro, F., et al. (2012) · PLoS ONE · doi:10.1371/journal.pone.0038601 · Cited by 106

Dynamic Viral Populations in Hypersaline Systems as Revealed by Metagenomic Assembly

Emerson, J., Thomas, B. C., Andrade, K., Allen, E. E., Heidelberg, K. B., & Banfield, J. F. (2012) · Applied and Environmental Microbiology · doi:10.1128/aem.01212-12 · Cited by 102

Novel Bacterial Taxa in the Human Microbiome

Wylie, K. M., Truty, R., Sharpton, T. J., Mihindukulasuriya, K. A., Zhou, Y., Gao, H., Sodergren, E. J., Weinstock, G. M., & Pollard, K. S. (2012) · PLoS ONE · doi:10.1371/journal.pone.0035294 · Cited by 102

FLDS: A Comprehensive dsRNA Sequencing Method for Intracellular RNA Virus Surveillance

Urayama, S., Takaki, Y., & Nunoura, T. (2016) · Microbes and Environments · doi:10.1264/jsme2.me15171 · Cited by 98

Identification of putative candidate genes involved in cuticle formation in Prunus avium (sweet cherry) fruit

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Complete chloroplast genome sequence of Elodea canadensis and comparative analyses with other monocot plastid genomes

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