The DOI matches its Crossref record; 3 of the 3 references it cites were found in a registry or an index.
A graphical interface for the FoldX forcefield
Abstract
Summary: A graphical user interface for the FoldX protein design program has been developed as a plugin for the YASARA molecular graphics suite. The most prominent FoldX commands such as free energy difference upon mutagenesis and interaction energy calculations can now be run entirely via a windowed menu system and the results are immediately shown on screen. Availability and Implementation: The plugin is written in Python and is freely available for download at http://foldxyasara.switchlab.org/ and supported on Linux, MacOSX and MS Windows. Contact: frederic.rousseau@switch.vib-vub.be; joost.schymkowitz@switch.vib-vub.be; luis.serrano@crg.es
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Citations
Cites
The FoldX web server: an online force field
Schymkowitz, J., Borg, J., Stricher, F., Nys, R., Rousseau, F., & Serrano, L. (2005) · Nucleic Acids Research · doi:10.1093/nar/gki387 · Cited by 2,759
Self-citationGuerois, R., Nielsen, J. E., & Serrano, L. (2002) · Journal of Molecular Biology · doi:10.1016/s0022-2836(02)00442-4 · Cited by 1,728
Self-citationPredicting protein structures with a multiplayer online game
Cooper, S., Khatib, F., Treuille, A., Barbero, J., Lee, J., Beenen, M., Leaver-Fay, A., Baker, D., Popović, Z., & players, F. (2010) · Nature · doi:10.1038/nature09304 · Cited by 1,368
Cited by
FoldX as Protein Engineering Tool: Better Than Random Based Approaches?
Buß, O., Rudat, J., & Ochsenreither, K. (2018) · Computational and Structural Biotechnology Journal · doi:10.1016/j.csbj.2018.01.002 · Cited by 284
Verheijen, J., Van den Bossche, T., van der Zee, J., Engelborghs, S., Sanchez-Valle, R., Lladó, A., Graff, C., Thonberg, H., Pastor, P., Ortega-Cubero, S., et al. (2016) · Acta Neuropathologica · doi:10.1007/s00401-016-1566-9 · Cited by 112
Functionally compromised CHD7 alleles in patients with isolated GnRH deficiency
Balasubramanian, R., Choi, J.-H., Francescatto, L., Willer, J., Horton, E. R., Asimacopoulos, E. P., Stankovic, K. M., Plummer, L., Buck, C. L., Quinton, R., et al. (2014) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1417438111 · Cited by 83
Substitution of PINK1 Gly411 modulates substrate receptivity and turnover
Fiesel, F. C., Fričová, D., Hayes, C. S., Coban, M. A., Hudec, R., Bredenberg, J. M., Broadway, B. J., Markham, B. N., Yan, T., Boneski, P. K., et al. (2023) · Autophagy · doi:10.1080/15548627.2022.2151294 · Cited by 29
Kahveci-Türköz, S., Bläsius, K., Wozniak, J., Rinkens, C., Seifert, A., Kasparek, P., Ohm, H., Oltzen, S., Nieszporek, M., Schwarz, N., et al. (2023) · Cellular and Molecular Life Sciences · doi:10.1007/s00018-023-04783-y · Cited by 17
Metadata
- Authors
- Van Durme, J., Delgado, J., Stricher, F., Serrano, L., Schymkowitz, J., & Rousseau, F.
- Venue
- Bioinformatics
- Publisher
- Oxford University Press (OUP)
- Published
- 2011-04-19
- Volume
- 27
- Issue
- 12
- Pages
- 1711-1712
- ISSN
- 1367-4803 (ISSN-L)
- 1367-4811
- OpenAlex
- W2170060741
- Cited by
- 336
- References
- 3
- FWCI
- 6.35
- Type
- journal article
- Language
- en
- Open access
- closed
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- Van Durme, J., Delgado, J., Stricher, F., Serrano, L., Schymkowitz, J., & Rousseau, F. (2011). A graphical interface for the FoldX forcefield. Bioinformatics. https://doi.org/10.1093/bioinformatics/btr254
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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
