FLASH: fast length adjustment of short reads to improve genome assemblies

Magoč, Tanja, Salzberg, Steven L.·2011·Bioinformatics

Cited by (1,050)

Items 401–500 of 1,050

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    Wei Shen, Mengyu Shen, Xia Zhao, Hongbin Zhu, Yuhui Yang, Shuguang Lu, Yinling Tan, Gang Li, Ming Li, Jing Wang et al. · 2017 · Frontiers in Microbiology
  98. Association between the cervicovaginal microbiome, BRCA1 mutation status, and risk of ovarian cancer: a case-control study
    Nuno Rocha Nene, Daniel Reisel, Andreas Leimbach, Dorella Franchi, Allison Jones, Iona Evans, Susanne Knapp, Andy Ryan, Shohreh Ghazali, John F. Timms et al. · 2019 · The Lancet Oncology
  99. Antibiotic resistomes in drinking water sources across a large geographical scale: Multiple drivers and co-occurrence with opportunistic bacterial pathogens
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  100. Comparative Evaluation of DNA Extraction Methods from Feces of Multiple Host Species for Downstream Next-Generation Sequencing
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