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MALDIquant: a versatile R package for the analysis of mass spectrometry data
Open accessAbstract
Summary: MALDIquant is an R package providing a complete and modular analysis pipeline for quantitative analysis of mass spectrometry data. MALDIquant is specifically designed with application in clinical diagnostics in mind and implements sophisticated routines for importing raw data, preprocessing, non-linear peak alignment and calibration. It also handles technical replicates as well as spectra with unequal resolution. Availability: MALDIquant and its associated R packages readBrukerFlexData and readMzXmlData are freely available from the R archive CRAN (http://cran.r-project.org). The software is distributed under the GNU General Public License (version 3 or later) and is accompanied by example files and data. Additional documentation is available from http://strimmerlab.org/software/maldiquant/. Contact: mail@sebastiangibb.de
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Weis, C., Cuénod, A., Rieck, B., Dubuis, O., Graf, S., Lang, C., Oberle, M., Brackmann, M., Søgaard, K. K., Osthoff, M., et al. (2022) · Nature Medicine · doi:10.1038/s41591-021-01619-9 · Cited by 292
Unsupervised machine learning for exploratory data analysis in imaging mass spectrometry
Verbeeck, N., Caprioli, R. M., & Van de Plas, R. (2020) · Mass Spectrometry Reviews · doi:10.1002/mas.21602 · Cited by 281
A Genome-Wide Map of Mitochondrial DNA Recombination in Yeast
Fritsch, E. S., Chabbert, C. D., Klaus, B., & Steinmetz, L. M. (2014) · Genetics · doi:10.1534/genetics.114.166637 · Cited by 77
Multimodal Image Fusion Offers Better Spatial Resolution for Mass Spectrometry Imaging
Guo, L., Zhu, J., Wang, K., Cheng, K.-K., Xu, J., Dong, L., Xu, X., Chen, C., Shah, M., Peng, Z., et al. (2023) · Analytical Chemistry · doi:10.1021/acs.analchem.3c02002 · Cited by 36
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Metadata
- Authors
- Gibb, S., & Strimmer, K.
- Venue
- Bioinformatics
- Publisher
- Oxford University Press (OUP)
- Published
- 2012-07-12
- Volume
- 28
- Issue
- 17
- Pages
- 2270-2271
- ISSN
- 1367-4803 (ISSN-L)
- 1367-4811
- OpenAlex
- W2147214095
- Cited by
- 695
- References
- 0
- FWCI
- 7.85
- Type
- journal article
- Language
- en
- Open access
- bronze
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