The DOI matches its Crossref record; 8 of the 8 references it cites were found in a registry or an index.
PROVEAN web server: a tool to predict the functional effect of amino acid substitutions and indels
Open accessAbstract
Summary: We present a web server to predict the functional effect of single or multiple amino acid substitutions, insertions and deletions using the prediction tool PROVEAN. The server provides rapid analysis of protein variants from any organisms, and also supports high-throughput analysis for human and mouse variants at both the genomic and protein levels. Availability and implementation: The web server is freely available and open to all users with no login requirements at http://provean.jcvi.org. Contact: achan@jcvi.org Supplementary information: Supplementary data are available at Bioinformatics online.
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Cites
A method and server for predicting damaging missense mutations.
Adzhubei, I. A., Schmidt, S., Peshkin, L., Ramensky, V. E., Gerasimova, A., Bork, P., Kondrashov, A. S., & Sunyaev, S. R. (2010) · Nature Methods · doi:10.1038/nmeth0410-248 · Cited by 13,194
Kumar, P., Henikoff, S., & Ng, P. C. (2009) · Nature Protocols · doi:10.1038/nprot.2009.86 · Cited by 6,521
Predicting the Functional Effect of Amino Acid Substitutions and Indels
Choi, Y., Sims, G. E., Murphy, S., Miller, J. R., & Chan, A. P. (2012) · PLoS ONE · doi:10.1371/journal.pone.0046688 · Cited by 2,890
Self-citationPredicting Deleterious Amino Acid Substitutions
Ng, P. C., & Henikoff, S. (2001) · Genome Research · doi:10.1101/gr.176601 · Cited by 2,368
Predicting the Effects of Amino Acid Substitutions on Protein Function
Ng, P. C., & Henikoff, S. (2006) · Annual Review of Genomics and Human Genetics · doi:10.1146/annurev.genom.7.080505.115630 · Cited by 978
Needles in stacks of needles: finding disease-causal variants in a wealth of genomic data
Cooper, G. M., & Shendure, J. (2011) · Nature Reviews Genetics · doi:10.1038/nrg3046 · Cited by 575
Sunyaev, S. R., Eisenhaber, F., Rodchenkov, I. V., Eisenhaber, B., Tumanyan, V. G., & Kuznetsov, E. N. (1999) · Protein Engineering, Design and Selection · doi:10.1093/protein/12.5.387 · Cited by 216
Choi, Y. (2012) · ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics (ACM-BCB) · doi:10.1145/2382936.2382989 · Cited by 133
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Cited by
van Rheenen, W., van der Spek, R. A. A., Bakker, M. K., van Vugt, J. J. F. A., Hop, P. J., Zwamborn, R. A. J., de Klein, N., Westra, H.-J., Bakker, O. B., Deelen, P., et al. (2021) · Nature Genetics · doi:10.1038/s41588-021-00973-1 · Cited by 542
Multiplex assessment of protein variant abundance by massively parallel sequencing
Matreyek, K. A., Starita, L. M., Stephany, J. J., Martin, B., Chiasson, M. A., Gray, V. E., Kircher, M., Khechaduri, A., Dines, J. N., Hause, R. J., et al. (2018) · Nature Genetics · doi:10.1038/s41588-018-0122-z · Cited by 436
Exome Sequencing and the Management of Neurometabolic Disorders
Tarailo-Graovac, M., Shyr, C., Ross, C. J., Horvath, G. A., Salvarinova, R., Ye, X. C., Zhang, L.-H., Bhavsar, A. P., Lee, J. J. Y., Drögemöller, B. I., et al. (2016) · New England Journal of Medicine · doi:10.1056/nejmoa1515792 · Cited by 281
Horak, P., Griffith, M., Danos, A. M., Pitel, B. A., Madhavan, S., Liu, X., Chow, C., Williams, H., Carmody, L., Barrow-Laing, L., et al. (2022) · Genetics in Medicine · doi:10.1016/j.gim.2022.01.001 · Cited by 257
Purging and accumulation of genetic load in conservation
Dussex, N., Morales, H. E., Grossen, C., Dalén, L., & van Oosterhout, C. (2023) · Trends in Ecology & Evolution · doi:10.1016/j.tree.2023.05.008 · Cited by 193
Metadata
- Authors
- Choi, Y., & Chan, A. P.
- Venue
- Bioinformatics
- Publisher
- Oxford University Press (OUP)
- Published
- 2015-04-06
- Volume
- 31
- Issue
- 16
- Pages
- 2745-2747
- ISSN
- 1367-4803 (ISSN-L)
- 1367-4811
- OpenAlex
- W2024405748
- Cited by
- 2,549
- References
- 8
- FWCI
- 77.10
- Type
- journal article
- Language
- en
- Open access
- bronze
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- Choi, Y., & Chan, A. P. (2015). PROVEAN web server: a tool to predict the functional effect of amino acid substitutions and indels. Bioinformatics. https://doi.org/10.1093/bioinformatics/btv195
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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
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