MetaQUAST: evaluation of metagenome assemblies
Cited by (717)
Items 401–500 of 717
- Microbial metabolic potential of hydrothermal vent chimneys along the submarine ring of fireLaura Murray, Heather E. Fullerton, C.L. Moyer · 2024 · Frontiers in Microbiology
- 16S rRNA-based taxonomy profiling in the metagenomics eraGiovanni Bacci, Lorenzo Casbarra, Matteo Ramazzotti · 2024 · Elsevier eBooks
- The influence of depth on the global deep-sea plasmidomeMelany Calderón-Osorno, Dorian Rojas-Villalta, Franck Lejzerowicz, Jorge Cortés, María Arias-Andrés, Keilor Rojas-Jiménez · 2025 · Scientific Reports
- HaploJuice : accurate haplotype assembly from a pool of sequences with known relative concentrationsThomas K. F. Wong, Louis Ranjard, Yu Lin, Allen G. Rodrigo · 2018 · BMC Bioinformatics
- Trimming and Decontamination of Metagenomic Data can Significantly Impact Assembly and Binning Metrics, Phylogenomic and Functional AnalysisJason M. Whitham, Amy Michele Grunden · 2023 · Current Bioinformatics
- A primer-independent DNA polymerase-based method for competent whole-genome amplification of intermediate to high GC sequencesCarlos D. Ordóñez, Carmen Mayoral-Campos, Conceição Egas, Modesto Redrejo‐Rodríguez · 2023 · NAR Genomics and Bioinformatics
- Substrate Specificity of Biofilms Proximate to Historic ShipwrecksRachel L. Mugge, Rachel D. Moseley, Leila J. Hamdan · 2023 · Microorganisms
- A metagenomic investigation of phytoplasma diversity in Australian vegetable growing regionsBianca Rodrigues Jardim, Cherie Gambley, Lucy T. T. Tran‐Nguyen, Craig G. Webster, Monica A. Kehoe, Wycliff M. Kinoti, Samantha Bond, R. I. Davis, LYNNE M. JONES, Nandita Pathania et al. · 2024 · Microbial Genomics
- IMP: a pipeline for reproducible integrated metagenomic and metatranscriptomic analysesShaman Narayanasamy, Yohan Jarosz, Emilie E. L. Muller, Cedric Christian Laczny, Malte Herold, Anne Kaysen, Anna Heintz‐Buschart, Nicolás Pinel, Patrick May, Paul Wilmes · 2016 · bioRxiv (Cold Spring Harbor Laboratory)
- Nutrient parsimony shapes diversity and functionality in hyper-oligotrophic Antarctic soilsMarc W. Van Goethem, Surendra Vikram, DAVID W. HOPKINS, Grant Hall, Stephan M Woodborne, Thomas J. Aspray, Ian D. Hogg, Don Arthur Cowan, Thulani Peter Makhalanyane · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
- First genome assembly of the order Strepsiptera using PacBio HiFi reads reveals a miniature genomeMaría Isabel Castaño, Xinhai Ye, Floria M. K. Uy · 2024 · Scientific Data
- A detailed guide to assessing genome assembly based on long-read sequencing data using InspectorYan Ping Guo, Yuwei Song, Limin Jiang, Yu Chen, Michele Ceccarelli, Min Gao, Zechen Chong · 2025 · Nature Protocols
- An early microbial landscape: inspiring endeavor from the China Space Station Habitation Area Microbiome Program (CHAMP)Junxia Yuan, Jinlu Yang, Yue Sun, Yaqi Meng, Ziwei He, Wende Zhang, Lei Dang, Yan Xiang Song, Kanyan Xu, Na Lv et al. · 2025 · Science China Life Sciences
- Comparative analysis of three experimental methods for revealing human fecal microbial diversityCaiqing Yao, Yu Zhang, Lijun You, E Jingjing, Junguo Wang · 2025 · BMC Microbiology
- CarpeDeam: a de novo metagenome assembler for heavily damaged ancient datasetsLouis Kraft, Johannes Söding, Martin Steinegger, Annika Jochheim, Peter Wad Sackett, Antonio Fernàndez-Guerra, Gabriel Renaud · 2025 · Genome biology
- Metagenomic and culture-based genomics reveal virulence and resistance risks in Manila clam microbiomesYaling Wang, Linan He, Xing Hu, Yuhan Guan, Xiangnan Chen, Jiahui Du, Jiayan Chen, Chensheng Ma, Lianwei Ye · 2025 · Food Microbiology
- Host–microbiome mutualism drives urea carbon salvage and acetogenesis during hibernationMatthew D. Regan, Edna Chiang, Michael Grahn, Marco Tonelli, Fariba M. Assadi‐Porter, Garret Suen, Hannah V. Carey · 2026 · Proceedings of the National Academy of Sciences
- 2Pipe starts with a question: matching you with the correct pipeline for MAG reconstructionJeferyd Yepes-García, Laurent Falquet · 2026 · mSystems
- Metagenomic Insights into the Microbial Composition and Functional Potential of Cocoa (Theobroma cacao L.) During Fermentation and Drying in ColombiaDaniel López-Puentes, Zaida Zarely Ojeda Pérez, Diana Marcela Arias Moreno · 2026 · Microbial Ecology
- Diversity of bacteriocins in the microbiome of the Tucuruí Hydroelectric Power Plant water reservoir and three-dimensional structure prediction of a zoocinSávio Souza Costa, A B Lago Leticia, Artur Silva, Diego Assis das Graças, Jerônimo Lameira, Rafael Azevedo Baraúna · 2022 · Genetics and Molecular Biology
- Metagenomic Analysis of Microbial Diversity in the Moroccan Coastal Water of the Gibraltar StraitManal Chrairi, Saïd Barrijal, Antonio Castellano‐Hinojosa, Youssra Boumait, Chahrazade El Hamouti, Afaf Lamzouri, Hassan Ghazal, Rajaa Chahboune · 2024 · Water
- Sequential co-assembly reduces computational resources and errors in metagenome-assembled genomesHannah M. Lynn, Jeffrey I. Gordon · 2025 · Cell Reports Methods
- Assessment of Antimicrobial Resistance Genes and Pathobiome Diversity in Domestic Wastewater of a Tropical CountryFernando Molina-Ospina, Bradd Mendoza-Guido, Andrea Quesada-González, Luz Chacón, Mary Luz Barrios-Hernández · 2025 · Water
- Metagenomic and metatranscriptomic exploration of Avicennia germinans L.: Endophytic microbiome of leaves and rootsCésar Alejandro Lemos-Lucumí, Valentina Cárdenas‐Hernández, Nelson Toro‐Perea · 2025 · Microbiological Research
- A model, mixed-species urinary catheter biofilm derived from spinal cord injury patientsParisa Noorian, Kailey Hamann, M. Mozammel Hoque, Gustavo Espinoza-Vergara, Joyce To, Dominic Leo, Priyadarshini Chari, Gerard Weber, Obaydullah Marial, Julie Pryor et al. · 2025 · Biofilm
- Tamock: simulation of habitat-specific benchmark data in metagenomicsSamuel M. Gerner, Alexandra Bettina Graf, Thomas Rattei · 2021 · BMC Bioinformatics
- Role of co-infections in modulating disease severities and clinical phenotypesPriti Devi, Aanchal Yadav, Sunita Kumari Yadav, Jyoti Soni, Pallawi Kumari, Aakarshan Raina, Rajesh Pandey · 2023 · Elsevier eBooks
- Integrating chromatin conformation information in a self-supervised learning model improves metagenome binningHarrison Ho, Mansi Chovatia, Rob S Egan, Guifen He, Yuko Yoshinaga, Ivan Liachko, Ronan C. O’Malley, Zhong Wang · 2023 · PeerJ
- Metagenomic survey reveals global distribution and evolution of microbial sialic acid catabolismYisong Li, Yeshun Fan, Xiaofang Ma, Ying Wang, Jie Liu · 2023 · Frontiers in Microbiology
- A targeted approach to enrich host-associated bacteria for metagenomic sequencingAshley M. Dungan, Kshitij Tandon, Vanta J. Jameson, Cecilie Ravn Gøtze, Linda L. Blackall, Madeleine J. H. van Oppen · 2023 · FEMS Microbes
- Biodegradation of chloroethene compounds under microoxic conditionsAbidemi Oluranti Ojo, Julio Castillo, Errol Duncan Cason, Ángel Valverde · 2023 · Biotechnology and Bioengineering
- NGS-Based Metagenomics Depicting Taxonomic and Functional Insights into North-Western Himalayan Hot SpringsShailja Rangra, Nitish Kumar Sharma, Prem Lata, Kiran Bala Sharma, Reena Kumari, Sudhir P. Singh, Savitri · 2024 · Indian Journal of Microbiology
- Computational Metagenomics: State-of-the-Art, Facts and ArtifactsHarpreet Singh, Purnima Sharma, Rupinder Preet Kaur, Diksha Thakur, Pardeep Kaur · 2020 · Springer eBooks
- Oligotyping and Genome-Resolved Metagenomics Reveal Distinct Candidatus Accumulibacter Communities in Full-Scale Side-Stream versus Conventional Enhanced Biological Phosphorus Removal (EBPR) ConfigurationsVarun N. Srinivasan, Guangyu Li, Dongqi Wang, Nicholas Brewster Tooker, Zihan Dai, Annalisa Onnis‐Hayden, Ameet J. Pinto, April Z. Gu · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
- Advantages and limits of metagenomic assembly and binning of a giant virusFrederik Schulz, Julien Andréani, Rania Francis, Jacques Yaacoub Bou Khalil, Janey Lee, Bernard La Scola, Tanja Woyke · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
- Computational Methods for Chromosome-Scale Haplotype ReconstructionShilpa Garg · 2021 · Preprints.org
- Urea nitrogen recycling via gut symbionts increases in hibernators over the winter fastMatthew D. Regan, Edna Chiang, Yunxi Liu, Marco Tonelli, Kristen M. Verdoorn, Sadie R. Gugel, Garret Suen, Hannah V. Carey, Fariba M. Assadi‐Porter · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
- A multi omics approach unravels metagenomic and metabolic alterations of a probiotic in rainbow trout (Oncorhynchus mykiss)Jacob Agerbo Rasmussen, Kasper Rømer Villumsen, Madeleine Ernst, Martin Asser Hansen, Torunn Forberg, Shyam Gopalakrishnan, Marcus Thomas P. Gilbert, Anders Miki Bojesen, Karsten Kristiansen, Morten T. Limborg · 2021 · Research Square
- Direct DNA sequencing of ‘ Candidatus Liberibacter asiaticus’ from Diaphorina citri , the Asian citrus psyllid, and its implications for citrus greening disease managementSteven Higgins, Marina Mann, Michelle Lynn Heck · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
- Cross-kingdom metagenomic profiling of Lake Hillier reveals pigment-rich polyextremophiles and wide-ranging metabolic adaptationsMaria A. Sierra, Krista A. Ryon, Braden T. Tierney, Jonathan Foox, Chandrima Bhattacharya, Evan E. Afshin, Daniel Butler, Stefan J. Green, W. Kelley Thomas, Jordan S. Ramsdell et al. · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
- Deep sequencing-derived Metagenome Assembled Genomes from the gut microbiome of liver transplant patientsGoutam Banerjee, Suraya Rahman Papri, Hai Huang, Sanjaya Kumar Satapathy, Pratik Banerjee · 2025 · Scientific Data
- HLRMDB: a comprehensive database of the human microbiome with metagenomic assembly, taxonomic classification, and functional annotation by analysis of long-read and hybrid sequencing dataZhaoyu Zhai, Xiaohui Che, Wei Shen, Zishun Zhang, Yapeng Li, Jianbo Pan · 2025 · Nucleic Acids Research
- Preliminary characterization of Vibrio cholerae strains isolated from seafood samples marketed in PortugalTeresa Teixeira Lopes, David Lopes, Isabel Bastos Moura, Isabel Soares Sousa, João Rodrigues, Camila Fernandes, Maria João Barreira, Carla Maia, Cristina Belo Correia, Cristina M. B. S. Pintado et al. · 2025 · The Microbe
- Ecosystem health shapes viral ecology in peatland soilsJames C. Kosmopoulos, William Pallier, Ashish A. Malik, Karthik Anantharaman · 2025 · Nature Microbiology
- The role of mycobiome in terroir and during Muscat grapes fermentation unveiled by multi-omic analysisPaola Di Gianvito, Vania Sáez, Maria Dimopoulou, Christina Papandreou, Nicola Francesca, Urška Vrhovšek, Kalliopi Rantsiou, Luca Cocolin, Panagiotis Arapitsas, Vasileios Englezos · 2026 · Food Research International
- Genome-Resolved Metagenomics Suggests Site-Specific Microbial Adaptations in Urban Soils Co-Contaminated with Hydrocarbons and Heavy MetalsMorena India Mokoena, Rosina Nkuna, Tonderayi Sylvester Matambo · 2026 · Environments
- Environmental microbiome, resistome and plasmidome in agricultural areas with intensive poultry litter use: A metagenomic multicompartmental analysis of antimicrobial resistance gene disseminationEliene dos Santos Lopes, Douglas Alfradique Monteiro, Cláudio Ernesto Taveira Parente, Lucy Seldin · 2026 · Journal of Hazardous Materials Advances
- Shotgun metagenome sequencing and informatics can accurately form a metagenome-assembled genome (MAG) of the bacterial tier 1 select agent Burkholderia pseudomallei for rapid public health response eventsGregory A. Sprenger, Jay E. Gee, Mindy G. Elrod, Zachary P. Weiner, Christopher A. Gulvik · 2026 · Microbiology Spectrum
- Antibiotic resistance genes in drinking water: Absolute abundance, mobility, and hosts across the source-to-tap continuumJie Liu, Renxin Zhao, Jin Huang, Uli Klümper, Ke Yu, Jiayu Zhang, Guijuan Zhang, Thomas Ulrich Berendonk, Ryo Honda, Yang Yu et al. · 2026 · Chemical Engineering Journal
- Enteropathy produced in mice by intergenerational transmission of small intestinal microbiota from undernourished childrenKali M. Pruss, C.-Y. Kao, Alexandra E. Byrne, Robert Yuzen Chen, Blanda Di Luccia, Laura Karvelyte, Reyan Coskun, Mackenzie Lemieux, Keshav Nepal, Daniel M. Webber et al. · 2026 · Nature Microbiology
- Dimethylsulfoniopropionate metabolism shapes microbial ecology and physiological adaptation during the austral winter in Southern Ocean sea ice and seawaterZ. Mayibongwe Buthelezi, Rian Pierneef, Oliver K. I. Bezuidt, M. Nello J. Gregori, Stéphane Pesant, Daniele Iudicone, Libby Hanwell, Jonathan D. Todd, Thulani Peter Makhalanyane · 2026 · Nature Communications
- Accurate Annotation of Microbial Metagenomic Genes and Identification of Core SetsChiara Vanni · 2021 · Methods in molecular biology
- Artificial intelligence reveals roles of gut microbiota in driving human colorectal cancer evolutionXuehua Wan · 2021 · WArtificial Intelligence in Cancer
- Recovery and Analysis of Long-Read Metagenome-Assembled GenomesKrithika Arumugam, Irina N. Bessarab, Mindia Haryono, Rohan B. H. Williams · 2023 · Methods in molecular biology
- Meta-transcriptomic identification of groundnut RNA viruses in western Kenya and the novel detection of groundnut as a host for Cauliflower mosaic virusDennis Obonyo, George Ouma, Rachel Ikawa, Damaris A. Odeny · 2024 · Virology
- Systematic benchmarking of omics computational toolsSanjay Kumar, Manjusa Singh, Rajesh Kumar Sharma, Manish Gupta · 2024 · Elsevier eBooks
- Detection of mobile colistin resistance genes mcr-9.1 and mcr-10.1 in Enterobacter asburiae from Ecuadorian childrenSara G. Cifuentes, Jay P. Graham, Gabriel A. Trueba, Paúl Cárdenas · 2024 · Microbiology Resource Announcements
- HairSplitter: haplotype assembly from long, noisy readsRoland Faure, Dominique D. Lavenier, Jean‐François Flot · 2024 · Peer Community Journal
- Response of marine microbes to iron contained in colloids of glacial origin: a Kerguelen Island case studyRhea Thoppil, Stéphane Blain, Rui Zhang, Audrey Guéneuguès, Olivier Crispi, Philippe Catala, Barbara Marie, Ingrid Obernosterer · 2025 · ISME Communications
- Uncovering tissue-specific endophytic microbiota composition and activity in Rhizophora mangle L.: a metagenomic and metatranscriptomic approachValentina Cárdenas‐Hernández, César Alejandro Lemos-Lucumí, Nelson Toro‐Perea · 2025 · PeerJ
- Clin-mNGS: Automated Pipeline for Pathogen Detection from Clinical Metagenomic DataAkshatha Prasanna, Vidya Niranjan · 2020 · Current Bioinformatics
- Rhizosphere Metagenomics: Methods and ChallengesAbiramavalli Moorthy, Usha Balasundaram · 2021 · Rhizosphere biology
- Influence of soil management for soybean production under microbial diversity in amazon soilsOscar Victor Cardenas Alegria, Carlos Willian Dias Dantas, Elaine Maria Silva Guedes Lobato, Sandro Patroca Da Silva, Cássia Nazaré de Sousa Moraes, Ana Cecília Ribeiro Cruz, Rommel Thiago Jucá Ramos, Adriana Ribeiro Carneiro · 2022 · Frontiers in Environmental Science
- Efficient De Novo Assembly and Recovery of Microbial Genomes from Complex Metagenomes Using a Reduced Set of k-mersHajra Qayyum, Muhammad Faheem Raziq, Haseeb Manzoor, Syed Shujaat Ali Zaidi, Amjad H. Ali, Masood Ur Rehman Kayani · 2025 · Interdisciplinary Sciences Computational Life Sciences
- Improving Metagenomic Assemblies Through Data Partitioning: A GC Content ApproachFábio Malcher Miranda, Cassio Batista, Artur Silva, Jefferson Magalhaes De Morais, Nelson Neto, Rommel Thiago Jucá Ramos · 2018 · Lecture notes in computer science
- Metagenomes, Metagenome-Assembled Genomes, and Metatranscriptomes from Polychlorinated Biphenyl-Contaminated Sediment MicrocosmsJessica M. Ewald, Jerald L. Schnoor, Timothy E. Mattes · 2022 · Microbiology Resource Announcements
- Assessing taxonomic metagenome profilers with OPALFernando Meyer, Andreas Bremges, Peter Belmann, Stefan Janssen, Alice Carolyn McHardy, David Koslicki · 2018 · bioRxiv (Cold Spring Harbor Laboratory)
- Size-fractionated microbiome observed during an eight-month long sampling in Jiaozhou Bay and the Yellow SeaJianchang Tao, Wenxiu Wang, JL Weissman, Yongyu Zhang, Songze Chen, Yuanqing Zhu, Chuanlun Zhang, Shengwei Hou · 2022 · Scientific Data
- Diversity and biogeochemical roles of DNA viruses in Antarctic sea iceGang Liu, Meiaoxue Han, Yantao Liang, Andrew McMinn, Jianhua Sun, Andrew R. Martin, Fraser Kenndy, Ken G. Ryan, Chengxiang Gu, Gao Chen et al. · 2022 · Research Square
- “Quasigenus” among Phycodnaviridae : A diversity of chlorophyte-infecting viruses in response to a dense algal culture in a high-rate algal pondEmily E. Chase, Thomas M. Pitot, Sonia Monteil-Bouchard, Christelle Desnues, Guillaume Blanc · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
- Bioinformatic methods for genome-centric metagenomicsRhys Newell · 2023 · Queensland University of Technology
- Comprehensive Assessment of Eleven de novo HiFi Assemblers on Complex Eukaryotic Genomes and MetagenomesWenjuan Yu, Haohui Luo, Jinbao Yang, Shengchen Zhang, Heling Jiang, Xianjia Zhao, Xingqi Hui, Da Sun, Liang Li, Xiu-qing Wei et al. · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
- Strain-resolved de-novo metagenomic assembly of viral genomes and microbial 16S rRNAsAnnika Jochheim, Florian A. Jochheim, Alexandra Kolodyazhnaya, Étienne Morice, Martin Steinegger, Johannes Söding · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
- Assessing the performance of current strain resolution tools on long-read metagenomesAyorinde O. Afolayan, Stefany Ayala-Montaño, Ifeoluwa J. Akintayo, Laura Santos, Sandra Reuter · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
- Evaluation of Metagenome Binning: Advances and ChallengesArangasamy Yazhini, Étienne Morice, Annika Jochheim, Benjamin Lieser, Johannes Söding · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
- Genome-Resolved Metagenomics of Rice Straw Degradation Experiments in Colombian FieldsJeferyd Yepes-García, Nicolás Novoa-Montenegro, Vanessa Otero-Jiménez, Daniel Uribe-Vélez, Emiliano Barreto, Laurent Falquet · 2025 · Scientific Data
- Microbial Communities Driving Pollution Degradation in Contaminated EnvironmentsPooja Sharma, Ambreen Bano, Surendra Pratap Singh, Yen Wah Tong · 2024 · Elsevier eBooks
- Recent toolset of metagenomics for taxonomical and functional annotation of marine associated viruses: A reviewAbhay B. Fulke, Shrushti Eranezhath, Sanyog Raut, Harshal S. Jadhav · 2024 · Regional Studies in Marine Science
- Bioinformatic Pipeline for Profiling Foodborne Bacterial Ecology and Resistome from Short-Read MetagenomicsPierre Lemée, Arnaud Bridier · 2024 · Methods in molecular biology
- Flowtigs: Safety in flow decompositions for assembly graphsFrancisco Sena, Ingervo Eliel, Shahbaz Khan, Andrey D. Prjibelski, Sebastian Schmidt, Alexandru Ioan Tomescu · 2024 · iScience
- Simple, reference-independent assessment to empirically guide correction and polishing of hybrid microbial community metagenomic assemblyGarrett J. Smith, Theo A. van Alen, Maartje A. H. J. van Kessel, Sebastian Lücker · 2024 · PeerJ
- Methodological aspects of investigating the resistome in pig farm environmentsValeriia Ladyhina, Elisabeth Lindahl Rajala, Susanna Sternberg Lewerin, Leila Nasirzadeh, Erik Bongcam‐Rudloff, Johan Dicksved · 2025 · Journal of Microbiological Methods
- Ecological insights into circular putative plasmids in Stylissa carteri microbiomes across the Indo-PacificVanessa Oliveira, Marina R S Ferreira, Ana R. M. Polónia, Yusheng M Huang, Rohani Ambo‐Rappe, Nicole Joy de Voogd, Daniel F. R. Cleary, Newton C. M. Gomes · 2025 · Journal of Applied Microbiology
- Soil microbiome analysis of Uruguayan grasslands and croplands reveals losses of microbial diversity and necromass recycling traitsMatías Giménez, Paula Berenstecher, Andrés Ligrone, Gregorio Iraola, Gervasio Piñeiro · 2025 · Environmental Microbiome
- Distinct bacterial community structures with abundant carbon degradation and sulfur metabolisms found in different sea-ice types from the Central Arctic OceanSiddarthan Venkatachalam, Mats A. Granskog, Rafael Gonçalves‐Araujo, Dmitry Divine, Puthiya Veettil Vipindas, Thajudeen Jabir, Ahammed Shereef, Anand Jain · 2025 · Microbiology Spectrum
- First Insight into the Natural Attenuation of Emerging Contaminants Using a Metagenomics Approach from Drinking Water Sources in the Free StateAvela Mqambalala, Maleke Maleke, Lore-Mari Deysel, Jorge R. Osman, Alba Gómez-Árias, Ángel Valverde, Julio Castillo · 2025 · Microorganisms
- Metabolic and population profiles of active subseafloor autotrophs in young oceanic crust at deep-sea hydrothermal ventsSabrina M. Elkassas, Claudia Fortunato, Sharon L. Grim, D. A. Butterfield, James F. Holden, Joseph J. Vallino, Christopher Kenneth Algar, Lisa Zeigler Allen, Benjamin T. Larson, Giora Proskurowski et al. · 2025 · Applied and Environmental Microbiology
- Can silicate types regulate plant defense and rhizospheric microbiome diversity differently during heat stress conditions?Waqar Ahmad, Ram L. Ray, Abdul Latif Khan · 2025 · The Science of The Total Environment
- ViromeXplore: integrative workflows for complete and reproducible virome characterizationRodrigo Hernández-Velázquez, Michał Ziemski, Nicholas A. Bokulich · 2025 · Briefings in Bioinformatics
- Insights into the riverine metaplasmidome: The role of anthropogenic factors in shaping microbial communitiesMelany Calderón-Osorno, Kenia Barrantes, Franck Lejzerowicz, María Arias-Andrés, Keilor Rojas-Jiménez · 2025 · The Microbe
- Soil microbial adaptation to carbon deprivation: shifts in lignocellulolytic gene profiles following long-term plant exclusionDavid Benjamin Fidler, Paul B. L. George, Lucas J. Le Brun, Robert Iwan Griffiths, Davey L. Jones, James Edward McDonald · 2025 · Environmental Microbiome
- Unraveling microbial life from a high-altitude hydrothermal system in the Andes plateau and their potential for nitrogen transformationsCoral Pardo-Esté, Juan Castro‐Severyn, Jacqueline Aldridge, Diego Álvarez-Saravia, Lenka Kurte, Polette Aguilar‐Muñoz, Pablo Paquis, Vilma Pérez, David Medina, Wade H Jeffrey et al. · 2025 · Engineering Microbiology
- Urban Wastewater Metagenomics Reveals the Antibiotic Resistance Gene Distribution Across Latvian MunicipalitiesEdgars Liepa, Maija Ustinova, Dita Gudrā, Ance Roga, Ineta Kalniņa, Brigita Dejus, Sandis Dejus, Mārtiņš Strods, Laura Elīna Tomsone, Juris Ķibilds et al. · 2026 · Microorganisms
- ChromoMapper: a new tool to quickly compare large genome assembliesElvira Toscano, Elena Cimmino, Angelo Sabato Boccia, Leandra Sepe, Giovanni Paolella · 2026 · Bioinformatics Advances
- Shotgun metagenomic dataset of seawater bacterial communities from Pari Islands, IndonesiaBuntora Pasaribu, Christopher Vincent Mishael Dilens, Muhammad Wahyudin Lewaru, Diah Ayuningrum, Mufti Petala Patria, Donny Juliandri Prihadi, Noir Primadona Purba, Mochamad Untung Kurnia Agung, Ismail Maqbul, SULISTIOWATI SULISTIOWATI · 2026 · Microbiology Resource Announcements
- Weather conditions structure the taxonomic and functional diversity of the aeolian dust microbiomeLinton Freund, Talyssa M. Topacio, Yaning Miao, William C. Porter, Mark P. Swenson, Mia Rose Maltz, Jon K. Botthoff, Emma L. Aronson · 2026 · Frontiers in Microbiology
- Identification and characterization of a novel orthoreovirus from American eels, Anguilla rostrataJin-Xian Yang, Ying-Ying Li, Bin Sun, Qiang Chen, Jun Qing Ge · 2026 · Microbiology Spectrum
- Elucidating the Functional and Taxonomic Diversity of Soil Microbial Communities From Three Commercial Soybean Farms in South AfricaKhumbudzo Ndhlovu, Adeola Salawu-Rotimi, Francina Lebogang Bopape, Prudence Nompumelelo Mtsweni, Olubukola Oluranti Babalola, Ahmed Idris Hassen · 2026 · Environmental Microbiology Reports
- Long‐Term Effects of Straw‐Biochar Application and Fertilization Gradients on Black Soil Carbon Sequestration via Prokaryote‐Fungus‐Protist Interactions and Metagenomic‐Metabolite LinkagesYing Jiang, J S Zhao, Zhenhua Chen, Nan Jiang, Caiyan Lu, Yulan Zhang, Huaihai Chen · 2026 · Environmental Microbiology
- Bioinformatics roadmap for characterizing the gut microbiome to study its interactions and associations with the gut mucosal immune systemMuhammad Zohaib Anwar, Miguel Darío Prieto, William Hsiao · 2026 · Mucosal Immunology