MetaQUAST: evaluation of metagenome assemblies
Mikheenko, Alla, Saveliev, Vladislav, Gurevich, Alexey·2016·Bioinformatics
Cited by (717)
Items 601–700 of 717
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- Additional file 1 of Hidden genomic features of an invasive malaria vector, Anopheles stephensi, revealed by a chromosome-level genome assemblyMahul Chakraborty, Arunachalam Ramaiah, Adriana Adolfi, Paige V. Halas, Bhagyashree Kaduskar, Luna Thanh Ngo, Suvratha Jayaprasad, Paul, Kiran, Saurabh Whadgar, Subhashini Srinivasan et al. · 2021 · Figshare
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- Additional file 6 of Gauge your phage: benchmarking of bacteriophage identification tools in metagenomic sequencing dataSiu Fung Stanley Ho, Nicole E. Wheeler, Andrew D. Millard, Willem van Schaik · 2023 · Figshare
- Additional file 3 of Recovering high-quality bacterial genomes from cross-contaminated cultures: a case study of marine Vibrio campbelliiNeža Orel, Eduard Fadeev, Gerhard J. Herndl, Turk, Valentina, Tinkara Tinta · 2024 · Figshare
- Additional file 2 of Gauge your phage: benchmarking of bacteriophage identification tools in metagenomic sequencing dataSiu Fung Stanley Ho, Wheeler, Nicole E., Andrew D. Millard, Willem van Schaik · 2023 · Figshare
- Additional file 3 of Gauge your phage: benchmarking of bacteriophage identification tools in metagenomic sequencing dataSiu Fung Stanley Ho, Nicole E. Wheeler, Andrew D. Millard, Willem van Schaik · 2023 · Figshare
- Additional file 7 of Gauge your phage: benchmarking of bacteriophage identification tools in metagenomic sequencing dataSiu Fung Stanley Ho, Wheeler, Nicole E., Andrew D. Millard, Willem van Schaik · 2023 · Figshare
- Additional file 1 of Ariadne: synthetic long read deconvolution using assembly graphsLauren E. Mak, Dmitry Meleshko, Danko, David C., Waris N. Barakzai, Salil Maharjan, Natan Belchikov, Hajirasouliha, Iman · 2024 · Figshare
- Additional file 1 of Haploflow: strain-resolved de novo assembly of viral genomesAdrian Fritz, Andreas Bremges, Deng, Zhi-Luo, Till Robin Lesker, Jasper Götting, Tina Ganzenmueller, Alexander Sczyrba, Dilthey, Alexander, Klawonn, Frank, McHardy, Alice Carolyn · 2021 · Figshare
- Additional file 1 of Stratified microbial communities in Australia’s only anchialine cave are taxonomically novel and drive chemotrophic energy production via coupled nitrogen-sulphur cyclingTimothy M. Ghaly, Amaranta Focardi, Liam D. H. Elbourne, Brodie Sutcliffe, Humphreys, William, I. Paulsen, Sasha G. Tetu · 2023 · Figshare
- Additional file 1 of Comparative analysis reveals within-population genome size variation in a rotifer is driven by large genomic elements with highly abundant satellite DNA repeat elementsClaus‐Peter Stelzer, Blommaert, J., Waldvogel, A. M., Pichler, M., Bette J. Hecox-Lea, Mark Welch, D. B. · 2021 · Figshare
- Additional file 1 of Binning long reads in metagenomics datasets using composition and coverage informationWickramarachchi, Anuradha, Lin, Yu · 2022 · Figshare
- Additional file 2 of Identification of carbohydrate gene clusters obtained from in vitro fermentations as predictive biomarkers of prebiotic responsesCar Reen Kok, Devin J. Rose, Cui, Juan, Lisa A. Whisenhunt, Hutkins, Robert · 2024 · Figshare
- Additional file 2 of A multi-omics approach unravels metagenomic and metabolic alterations of a probiotic and synbiotic additive in rainbow trout (Oncorhynchus mykiss)Rasmussen, Jacob Agerbo, Kasper Rømer Villumsen, Ernst, Madeleine, Hansen, Martin, Torunn Forberg, Shyam Gopalakrishnan, Marcus Thomas P. Gilbert, Bojesen, Anders Miki, Kristiansen, Karsten, Morten T. Limborg · 2022 · Figshare
- Additional file 2 of Comparative analysis reveals within-population genome size variation in a rotifer is driven by large genomic elements with highly abundant satellite DNA repeat elementsClaus‐Peter Stelzer, Blommaert, J., Waldvogel, A. M., Pichler, M., Bette J. Hecox-Lea, Mark Welch, D. B. · 2021 · Figshare
- Additional file 8 of Gauge your phage: benchmarking of bacteriophage identification tools in metagenomic sequencing dataSiu Fung Stanley Ho, Nicole E. Wheeler, Millard, Andrew D., Willem van Schaik · 2023 · Figshare
- Additional file 2 of Persistent effects of intramammary ceftiofur treatment on the gut microbiome and antibiotic resistance in dairy cattleKarla A. Vasco, Samantha L. Carbonell, Rebekah E. Sloup, Bailey Bowcutt, Colwell, Rita R., Karlis Graubics, Ronald J. Erskine, Bo Norby, P.L. Ruegg, Zhang, Lixin et al. · 2024 · Figshare
- Additional file 5 of Gauge your phage: benchmarking of bacteriophage identification tools in metagenomic sequencing dataSiu Fung Stanley Ho, Nicole E. Wheeler, Andrew D. Millard, Willem van Schaik · 2023 · Figshare
- Additional file 1 of Identification of carbohydrate gene clusters obtained from in vitro fermentations as predictive biomarkers of prebiotic responsesCar Reen Kok, Devin J. Rose, Cui, Juan, Lisa A. Whisenhunt, Hutkins, Robert · 2024 · Figshare
- Additional file 2 of Ariadne: synthetic long read deconvolution using assembly graphsLauren E. Mak, Dmitry Meleshko, Danko, David C., Waris N. Barakzai, Salil Maharjan, Natan Belchikov, Hajirasouliha, Iman · 2024 · Figshare
- Additional file 1 of Recovering high-quality bacterial genomes from cross-contaminated cultures: a case study of marine Vibrio campbelliiNeža Orel, Eduard Fadeev, Gerhard J. Herndl, Turk, Valentina, Tinkara Tinta · 2024 · Figshare
- Additional file 4 of Gauge your phage: benchmarking of bacteriophage identification tools in metagenomic sequencing dataSiu Fung Stanley Ho, Nicole E. Wheeler, Andrew D. Millard, Willem van Schaik · 2023 · Figshare
- Additional file 2 of Haploflow: strain-resolved de novo assembly of viral genomesAdrian Fritz, Andreas Bremges, Deng, Zhi-Luo, Till Robin Lesker, Jasper Götting, Tina Ganzenmueller, Alexander Sczyrba, Dilthey, Alexander, Klawonn, Frank, McHardy, Alice Carolyn · 2021 · Figshare
- Additional file 1 of Persistent effects of intramammary ceftiofur treatment on the gut microbiome and antibiotic resistance in dairy cattleKarla A. Vasco, Samantha L. Carbonell, Rebekah E. Sloup, Bailey Bowcutt, Colwell, Rita R., Karlis Graubics, Ronald J. Erskine, Bo Norby, P.L. Ruegg, Lixin Zhang et al. · 2024 · Figshare
- Additional file 1 of Gauge your phage: benchmarking of bacteriophage identification tools in metagenomic sequencing dataSiu Fung Stanley Ho, Wheeler, Nicole E., Andrew D. Millard, Willem van Schaik · 2023 · Figshare
- Additional file 2 of Recovering high-quality bacterial genomes from cross-contaminated cultures: a case study of marine Vibrio campbelliiNeža Orel, Eduard Fadeev, Gerhard J. Herndl, Turk, Valentina, Tinkara Tinta · 2024 · Figshare
- Additional file 2 of ORFograph: search for novel insecticidal protein genes in genomic and metagenomic assembly graphsTatiana Dvorkina, Anton Bankevich, Alexeï Sorokin, Yang, Fan, Boahemaa Adu‐Oppong, Williams, Ryan, Keith H. Turner, Pavel A. Pevzner · 2021 · Figshare
- Additional file 2 of In-depth characterization of denitrifier communities across different soil ecosystems in the tundraIgor Stelmach Pessi, Sirja Viitamäki, Virkkala, Anna-Maria, Eeva Eronen‐Rasimus, Tom O. Delmont, Maija E. Marushchak, Miska Luoto, Hultman, Jenni · 2022 · Figshare
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